RNA–Protein interactions for RNA: ENST00000392455.7

CCDC50-201, Transcript of coiled-coil domain containing 50, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CCDC50, Length 8,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50-201ENST00000392455 ACTN2P35609 894 aa17.09■□□□□ 0.33
CCDC50-201ENST00000392455 EHMT1Q9H9B1 1298 aa17.09■□□□□ 0.33
CCDC50-201ENST00000392455 CTNNA2P26232 953 aa17.09■□□□□ 0.33
CCDC50-201ENST00000392455 NFKBIBQ15653 356 aa17.09■□□□□ 0.33
CCDC50-201ENST00000392455 CCDC113Q9H0I3 377 aa17.09■□□□□ 0.33
CCDC50-201ENST00000392455 SIL1Q9H173 461 aa17.09■□□□□ 0.33
CCDC50-201ENST00000392455 NOB1Q9ULX3 412 aaKnown RBP17.09■□□□□ 0.33
CCDC50-201ENST00000392455 STK3Q13188 491 aa17.09■□□□□ 0.33
CCDC50-201ENST00000392455 CEP112Q8N8E3 955 aa17.09■□□□□ 0.33
CCDC50-201ENST00000392455 SFPQP23246 707 aaKnown RBP eCLIP17.08■□□□□ 0.33
CCDC50-201ENST00000392455 PRKAR2BP31323 418 aa17.08■□□□□ 0.33
CCDC50-201ENST00000392455 CAVIN2O95810 425 aa17.08■□□□□ 0.32
CCDC50-201ENST00000392455 CABP4P57796 275 aa17.08■□□□□ 0.32
CCDC50-201ENST00000392455 ZHX3Q9H4I2 956 aa17.08■□□□□ 0.32
CCDC50-201ENST00000392455 PLEKHH1Q9ULM0 1364 aa17.08■□□□□ 0.32
CCDC50-201ENST00000392455 CTR9Q6PD62 1173 aa17.08■□□□□ 0.32
CCDC50-201ENST00000392455 SPC24Q8NBT2 197 aa17.08■□□□□ 0.32
CCDC50-201ENST00000392455 PRPF40AO75400 957 aaKnown RBP17.07■□□□□ 0.32
CCDC50-201ENST00000392455 RBM5P52756 815 aaKnown RBP eCLIP17.07■□□□□ 0.32
CCDC50-201ENST00000392455 ZSCAN31Q96LW9 406 aaPredicted RBP17.07■□□□□ 0.32
CCDC50-201ENST00000392455 TATP17735 454 aaPredicted RBP17.07■□□□□ 0.32
CCDC50-201ENST00000392455 TMEM87AQ8NBN3 555 aa17.07■□□□□ 0.32
CCDC50-201ENST00000392455 KIAA1524Q8TCG1 905 aa17.07■□□□□ 0.32
CCDC50-201ENST00000392455 CTAGE5O15320 804 aa17.07■□□□□ 0.32
CCDC50-201ENST00000392455 ZFYP08048 801 aaPredicted RBP17.07■□□□□ 0.32
CCDC50-201ENST00000392455 SPECC1Q5M775 1068 aa17.07■□□□□ 0.32
CCDC50-201ENST00000392455 PPP1R14CQ8TAE6 165 aa17.07■□□□□ 0.32
CCDC50-201ENST00000392455 TMCO5BA8MYB1 307 aa17.07■□□□□ 0.32
CCDC50-201ENST00000392455 TWISTNBQ3B726 338 aaPredicted RBP17.07■□□□□ 0.32
CCDC50-201ENST00000392455 STXBP4Q6ZWJ1 553 aa17.07■□□□□ 0.32
CCDC50-201ENST00000392455 FIBPO43427 364 aa17.07■□□□□ 0.32
CCDC50-201ENST00000392455 MYL6BP14649 208 aa17.07■□□□□ 0.32
CCDC50-201ENST00000392455 GCC1Q96CN9 775 aa17.06■□□□□ 0.32
CCDC50-201ENST00000392455 BRD4O60885 1362 aaPredicted RBP17.06■□□□□ 0.32
CCDC50-201ENST00000392455 UBE4AQ14139 1066 aa17.06■□□□□ 0.32
CCDC50-201ENST00000392455 FBF1Q8TES7 1133 aa17.06■□□□□ 0.32
CCDC50-201ENST00000392455 PTPN14Q15678 1187 aa17.06■□□□□ 0.32
CCDC50-201ENST00000392455 TCP11L2Q8N4U5 519 aa17.06■□□□□ 0.32
CCDC50-201ENST00000392455 CCDC155Q8N6L0 562 aa17.06■□□□□ 0.32
CCDC50-201ENST00000392455 VIMP08670 466 aaKnown RBP17.06■□□□□ 0.32
CCDC50-201ENST00000392455 ZNF76P36508 570 aa17.06■□□□□ 0.32
CCDC50-201ENST00000392455 PRPHP41219 470 aa17.06■□□□□ 0.32
CCDC50-201ENST00000392455 CCDC196A0A1B0GTZ2 297 aa17.05■□□□□ 0.32
CCDC50-201ENST00000392455 SH3BGRP55822 239 aaPredicted RBP17.05■□□□□ 0.32
CCDC50-201ENST00000392455 ANKRD50Q9ULJ7 1429 aa17.05■□□□□ 0.32
CCDC50-201ENST00000392455 GSDMDP57764 484 aa17.05■□□□□ 0.32
CCDC50-201ENST00000392455 FERMT2Q96AC1 680 aa17.05■□□□□ 0.32
CCDC50-201ENST00000392455 DDX54Q8TDD1 881 aaKnown RBP17.05■□□□□ 0.32
CCDC50-201ENST00000392455 DYNC1I1O14576 645 aa17.05■□□□□ 0.32
CCDC50-201ENST00000392455 CKAP4Q07065 602 aaKnown RBP17.05■□□□□ 0.32
CCDC50-201ENST00000392455 RAD54L2Q9Y4B4 1467 aa17.05■□□□□ 0.32
CCDC50-201ENST00000392455 SF3B2Q13435 895 aaKnown RBP17.05■□□□□ 0.32
CCDC50-201ENST00000392455 DNAJC21Q5F1R6 531 aaKnown RBP17.04■□□□□ 0.32
CCDC50-201ENST00000392455 SEC63Q9UGP8 760 aaKnown RBP17.04■□□□□ 0.32
CCDC50-201ENST00000392455 PPP6R1Q9UPN7 881 aa17.04■□□□□ 0.32
CCDC50-201ENST00000392455 PRAM1Q96QH2 718 aa17.04■□□□□ 0.32
CCDC50-201ENST00000392455 NUTM2BA6NNL0 878 aaPredicted RBP17.04■□□□□ 0.32
CCDC50-201ENST00000392455 NUTM2EB1AL46 878 aaPredicted RBP17.04■□□□□ 0.32
CCDC50-201ENST00000392455 EXOSC9Q06265 439 aaKnown RBP17.04■□□□□ 0.32
CCDC50-201ENST00000392455 CACNA2D4Q7Z3S7 1137 aa17.04■□□□□ 0.32
CCDC50-201ENST00000392455 NUTM2AQ8IVF1 878 aaPredicted RBP17.04■□□□□ 0.32
CCDC50-201ENST00000392455 SLC4A2P04920 1241 aa17.04■□□□□ 0.32
CCDC50-201ENST00000392455 MAP7D1Q3KQU3 841 aa17.04■□□□□ 0.32
CCDC50-201ENST00000392455 PPP1R9BQ96SB3 815 aa17.04■□□□□ 0.32
CCDC50-201ENST00000392455 MAP3K9P80192 1104 aa17.04■□□□□ 0.32
CCDC50-201ENST00000392455 SMC6Q96SB8 1091 aa17.04■□□□□ 0.32
CCDC50-201ENST00000392455 GOLIM4O00461 696 aa17.04■□□□□ 0.32
CCDC50-201ENST00000392455 GMNNO75496 209 aa17.04■□□□□ 0.32
CCDC50-201ENST00000392455 TXNDC2Q86VQ3 553 aa17.04■□□□□ 0.32
CCDC50-201ENST00000392455 PROSER2Q86WR7 435 aaPredicted RBP17.04■□□□□ 0.32
CCDC50-201ENST00000392455 GOPCQ9HD26 462 aa17.03■□□□□ 0.32
CCDC50-201ENST00000392455 TACC1O75410 805 aa17.03■□□□□ 0.32
CCDC50-201ENST00000392455 TOM1L2Q6ZVM7 507 aa17.03■□□□□ 0.32
CCDC50-201ENST00000392455 NUP133Q8WUM0 1156 aa17.03■□□□□ 0.32
CCDC50-201ENST00000392455 CEP83Q9Y592 693 aa17.03■□□□□ 0.32
CCDC50-201ENST00000392455 OPA1O60313 960 aa17.03■□□□□ 0.32
CCDC50-201ENST00000392455 IQCGQ9H095 443 aaKnown RBP17.03■□□□□ 0.32
CCDC50-201ENST00000392455 NUP62CLQ9H1M0 184 aa17.03■□□□□ 0.32
CCDC50-201ENST00000392455 HDGFL1Q5TGJ6 251 aa17.03■□□□□ 0.32
CCDC50-201ENST00000392455 PRPF31Q8WWY3 499 aaKnown RBP17.03■□□□□ 0.32
CCDC50-201ENST00000392455 KIF5AQ12840 1032 aa17.03■□□□□ 0.32
CCDC50-201ENST00000392455 PDZRN3Q9UPQ7 1066 aa17.03■□□□□ 0.32
CCDC50-201ENST00000392455 MPHOSPH6Q99547 160 aaKnown RBP17.02■□□□□ 0.32
CCDC50-201ENST00000392455 CASTP20810 708 aaKnown RBP17.02■□□□□ 0.32
CCDC50-201ENST00000392455 RNF187Q5TA31 235 aaPredicted RBP17.02■□□□□ 0.32
CCDC50-201ENST00000392455 CEP128Q6ZU80 1094 aa17.02■□□□□ 0.32
CCDC50-201ENST00000392455 USP37Q86T82 979 aa17.02■□□□□ 0.32
CCDC50-201ENST00000392455 SMARCC1Q92922 1105 aaPredicted RBP17.02■□□□□ 0.32
CCDC50-201ENST00000392455 MPHOSPH8Q99549 860 aa17.02■□□□□ 0.31
CCDC50-201ENST00000392455 CPSF2Q9P2I0 782 aaKnown RBP17.02■□□□□ 0.31
CCDC50-201ENST00000392455 FKBP4Q02790 459 aaKnown RBP eCLIP17.01■□□□□ 0.31
CCDC50-201ENST00000392455 CCDC178Q5BJE1 867 aa17.01■□□□□ 0.31
CCDC50-201ENST00000392455 MAP3K11Q16584 847 aa17.01■□□□□ 0.31
CCDC50-201ENST00000392455 SPATA32Q96LK8 384 aa17.01■□□□□ 0.31
CCDC50-201ENST00000392455 TSR2Q969E8 191 aaKnown RBP17.01■□□□□ 0.31
CCDC50-201ENST00000392455 CDCA7LQ96GN5 454 aa17.01■□□□□ 0.31
CCDC50-201ENST00000392455 PPP2R1AP30153 589 aa17.01■□□□□ 0.31
CCDC50-201ENST00000392455 UBAC1Q9BSL1 405 aa17.01■□□□□ 0.31
CCDC50-201ENST00000392455 JAKMIP2Q96AA8 810 aa17.01■□□□□ 0.31
CCDC50-201ENST00000392455 FAM184BQ9ULE4 1060 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms