RNA–Protein interactions for RNA: ENST00000391813.5

SHANK1-203, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 1 (best) BASIC

Gene SHANK1, Length 4,785 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-203ENST00000391813 AMOTL1Q8IY63 956 aa23.18■■□□□ 1.3
SHANK1-203ENST00000391813 ALDH1L2Q3SY69 923 aa23.17■■□□□ 1.3
SHANK1-203ENST00000391813 OFD1O75665 1012 aa23.17■■□□□ 1.3
SHANK1-203ENST00000391813 RBM33Q96EV2 1170 aaKnown RBP23.17■■□□□ 1.3
SHANK1-203ENST00000391813 NSD3Q9BZ95 1437 aa23.17■■□□□ 1.3
SHANK1-203ENST00000391813 PANK2Q9BZ23 570 aa23.17■■□□□ 1.3
SHANK1-203ENST00000391813 ZNHIT6Q9NWK9 470 aaKnown RBP23.17■■□□□ 1.3
SHANK1-203ENST00000391813 ZKSCAN5Q9Y2L8 839 aa23.17■■□□□ 1.3
SHANK1-203ENST00000391813 SCAF11Q99590 1463 aaKnown RBP23.17■■□□□ 1.3
SHANK1-203ENST00000391813 SLC4A2P04920 1241 aa23.16■■□□□ 1.3
SHANK1-203ENST00000391813 AIMP1Q12904 312 aaKnown RBP23.16■■□□□ 1.3
SHANK1-203ENST00000391813 RPRD2Q5VT52 1461 aaKnown RBP23.16■■□□□ 1.3
SHANK1-203ENST00000391813 ZSCAN12O43309 604 aa23.16■■□□□ 1.3
SHANK1-203ENST00000391813 GOLGA6L10A6NI86 522 aa23.15■■□□□ 1.3
SHANK1-203ENST00000391813 GTPBP4Q9BZE4 634 aaKnown RBP23.15■■□□□ 1.3
SHANK1-203ENST00000391813 ABCC11Q96J66 1382 aa23.15■■□□□ 1.3
SHANK1-203ENST00000391813 KRT32Q14532 448 aa23.15■■□□□ 1.3
SHANK1-203ENST00000391813 IQCEQ6IPM2 695 aa23.15■■□□□ 1.3
SHANK1-203ENST00000391813 LRSAM1Q6UWE0 723 aa23.15■■□□□ 1.3
SHANK1-203ENST00000391813 PAXBP1Q9Y5B6 917 aa23.15■■□□□ 1.3
SHANK1-203ENST00000391813 SHANK2Q9UPX8 1470 aa23.15■■□□□ 1.3
SHANK1-203ENST00000391813 WASHC4Q2M389 1173 aa23.14■■□□□ 1.3
SHANK1-203ENST00000391813 C8orf34Q49A92 452 aa23.14■■□□□ 1.3
SHANK1-203ENST00000391813 CCDC102AQ96A19 550 aa23.14■■□□□ 1.29
SHANK1-203ENST00000391813 CAVIN2O95810 425 aa23.14■■□□□ 1.29
SHANK1-203ENST00000391813 TIGD1Q96MW7 591 aa23.14■■□□□ 1.29
SHANK1-203ENST00000391813 ZSCAN23Q3MJ62 389 aa23.13■■□□□ 1.29
SHANK1-203ENST00000391813 NEUROD6Q96NK8 337 aa23.13■■□□□ 1.29
SHANK1-203ENST00000391813 ADCY5O95622 1261 aa23.13■■□□□ 1.29
SHANK1-203ENST00000391813 KRT28Q7Z3Y7 464 aa23.13■■□□□ 1.29
SHANK1-203ENST00000391813 FAM177A1Q8N128 213 aaPredicted RBP23.13■■□□□ 1.29
SHANK1-203ENST00000391813 FAM107BQ9H098 131 aa23.13■■□□□ 1.29
SHANK1-203ENST00000391813 ANO10Q9NW15 660 aa23.13■■□□□ 1.29
SHANK1-203ENST00000391813 GOLGA6L7A0A1B0GV03 622 aa23.13■■□□□ 1.29
SHANK1-203ENST00000391813 BMS1Q14692 1282 aaKnown RBP23.13■■□□□ 1.29
SHANK1-203ENST00000391813 JAKMIP1Q96N16 626 aaKnown RBP23.13■■□□□ 1.29
SHANK1-203ENST00000391813 SH2B1Q9NRF2 756 aaPredicted RBP23.13■■□□□ 1.29
SHANK1-203ENST00000391813 HSP90AB3PQ58FF7 597 aa23.13■■□□□ 1.29
SHANK1-203ENST00000391813 TMPOP42166 694 aaKnown RBP23.12■■□□□ 1.29
SHANK1-203ENST00000391813 RRS1Q15050 365 aaKnown RBP23.12■■□□□ 1.29
SHANK1-203ENST00000391813 TXLNBQ8N3L3 684 aa23.12■■□□□ 1.29
SHANK1-203ENST00000391813 ATP10AO60312 1499 aa23.12■■□□□ 1.29
SHANK1-203ENST00000391813 RIMS2Q9UQ26 1411 aa23.12■■□□□ 1.29
SHANK1-203ENST00000391813 SSH1Q8WYL5 1049 aa23.12■■□□□ 1.29
SHANK1-203ENST00000391813 SNX21Q969T3 373 aa23.12■■□□□ 1.29
SHANK1-203ENST00000391813 NEO1Q92859 1461 aa23.11■■□□□ 1.29
SHANK1-203ENST00000391813 SART3Q15020 963 aaKnown RBP23.11■■□□□ 1.29
SHANK1-203ENST00000391813 MAGEC2Q9UBF1 373 aaPredicted RBP23.11■■□□□ 1.29
SHANK1-203ENST00000391813 TCOF1Q13428 1488 aaKnown RBP23.11■■□□□ 1.29
SHANK1-203ENST00000391813 ZMYM3Q14202 1370 aa23.11■■□□□ 1.29
SHANK1-203ENST00000391813 CTAGE5O15320 804 aa23.11■■□□□ 1.29
SHANK1-203ENST00000391813 CLIP2Q9UDT6 1046 aa23.11■■□□□ 1.29
SHANK1-203ENST00000391813 LUC7LQ9NQ29 371 aaKnown RBP23.11■■□□□ 1.29
SHANK1-203ENST00000391813 GSDMDP57764 484 aa23.1■■□□□ 1.29
SHANK1-203ENST00000391813 HDGFL1Q5TGJ6 251 aa23.1■■□□□ 1.29
SHANK1-203ENST00000391813 C16orf45Q96MC5 204 aaPredicted RBP23.1■■□□□ 1.29
SHANK1-203ENST00000391813 DDX19AQ9NUU7 478 aaKnown RBP23.1■■□□□ 1.29
SHANK1-203ENST00000391813 KRT222Q8N1A0 295 aa23.1■■□□□ 1.29
SHANK1-203ENST00000391813 IGHDP01880 384 aa23.1■■□□□ 1.29
SHANK1-203ENST00000391813 AMOTQ4VCS5 1084 aa23.1■■□□□ 1.29
SHANK1-203ENST00000391813 VPS53Q5VIR6 699 aa23.09■■□□□ 1.29
SHANK1-203ENST00000391813 NGLY1Q96IV0 654 aa23.09■■□□□ 1.29
SHANK1-203ENST00000391813 BRPF1P55201 1214 aaPredicted RBP23.09■■□□□ 1.29
SHANK1-203ENST00000391813 NOLC1Q14978 699 aaKnown RBP eCLIP23.09■■□□□ 1.29
SHANK1-203ENST00000391813 TXLNAP40222 546 aa23.08■■□□□ 1.29
SHANK1-203ENST00000391813 KLHL34Q8N239 644 aa23.08■■□□□ 1.29
SHANK1-203ENST00000391813 NPHP3Q7Z494 1330 aa23.08■■□□□ 1.29
SHANK1-203ENST00000391813 SKIDA1Q1XH10 827 aa23.08■■□□□ 1.29
SHANK1-203ENST00000391813 CCDC94Q9BW85 323 aaPredicted RBP23.08■■□□□ 1.29
SHANK1-203ENST00000391813 TARBP1Q13395 1621 aaKnown RBP23.08■■□□□ 1.29
SHANK1-203ENST00000391813 STK3Q13188 491 aa23.08■■□□□ 1.28
SHANK1-203ENST00000391813 TRIM34Q9BYJ4 488 aa23.08■■□□□ 1.28
SHANK1-203ENST00000391813 ARHGAP29Q52LW3 1261 aa23.07■■□□□ 1.28
SHANK1-203ENST00000391813 CRACR2AQ9BSW2 395 aa23.07■■□□□ 1.28
SHANK1-203ENST00000391813 NSD2O96028 1365 aa23.07■■□□□ 1.28
SHANK1-203ENST00000391813 ERLIN2O94905 339 aa23.07■■□□□ 1.28
SHANK1-203ENST00000391813 CFAP100Q494V2 611 aa23.06■■□□□ 1.28
SHANK1-203ENST00000391813 SMAP1Q8IYB5 467 aaPredicted RBP23.06■■□□□ 1.28
SHANK1-203ENST00000391813 URI1O94763 535 aaPredicted RBP23.06■■□□□ 1.28
SHANK1-203ENST00000391813 MAP9Q49MG5 647 aa23.06■■□□□ 1.28
SHANK1-203ENST00000391813 TBC1D9Q6ZT07 1266 aa23.06■■□□□ 1.28
SHANK1-203ENST00000391813 UBAP1LF5GYI3 381 aa23.06■■□□□ 1.28
SHANK1-203ENST00000391813 CCDC181Q5TID7 509 aa23.06■■□□□ 1.28
SHANK1-203ENST00000391813 MCM3P25205 808 aa23.05■■□□□ 1.28
SHANK1-203ENST00000391813 UBE2HP62256 183 aa23.05■■□□□ 1.28
SHANK1-203ENST00000391813 HDAC1Q13547 482 aaPredicted RBP23.05■■□□□ 1.28
SHANK1-203ENST00000391813 SHTN1A0MZ66 631 aa23.05■■□□□ 1.28
SHANK1-203ENST00000391813 SPDYE4A6NLX3 237 aa23.05■■□□□ 1.28
SHANK1-203ENST00000391813 CAMK4Q16566 473 aa23.05■■□□□ 1.28
SHANK1-203ENST00000391813 MX1P20591 662 aa23.04■■□□□ 1.28
SHANK1-203ENST00000391813 CASTP20810 708 aaKnown RBP23.04■■□□□ 1.28
SHANK1-203ENST00000391813 MAPK8IP2Q13387 824 aaPredicted RBP23.04■■□□□ 1.28
SHANK1-203ENST00000391813 LIMCH1Q9UPQ0 1083 aa23.04■■□□□ 1.28
SHANK1-203ENST00000391813 EPB41L2O43491 1005 aaKnown RBP23.04■■□□□ 1.28
SHANK1-203ENST00000391813 TERF1P54274 439 aa23.04■■□□□ 1.28
SHANK1-203ENST00000391813 GTF2F1P35269 517 aaKnown RBP eCLIP23.04■■□□□ 1.28
SHANK1-203ENST00000391813 ADAMTS2O95450 1211 aa23.04■■□□□ 1.28
SHANK1-203ENST00000391813 NFE2L2Q16236 605 aa23.04■■□□□ 1.28
SHANK1-203ENST00000391813 JAKMIP3Q5VZ66 844 aa23.03■■□□□ 1.28
SHANK1-203ENST00000391813 TBX22Q9Y458 520 aa23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms