RNA–Protein interactions for RNA: ENST00000380324.7

USP3-202, Transcript of ubiquitin specific peptidase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP3, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-202ENST00000380324 BCL11AQ9H165 835 aa15.08■□□□□ 0
USP3-202ENST00000380324 CHRNA2Q15822 529 aa15.07■□□□□ 0
USP3-202ENST00000380324 AMOTQ4VCS5 1084 aa15.07■□□□□ 0
USP3-202ENST00000380324 HDGFL1Q5TGJ6 251 aa15.07■□□□□ 0
USP3-202ENST00000380324 GCC1Q96CN9 775 aa15.07■□□□□ 0
USP3-202ENST00000380324 NLRP2Q9NX02 1062 aa15.07■□□□□ 0
USP3-202ENST00000380324 BABAM1Q9NWV8 329 aa15.06■□□□□ 0
USP3-202ENST00000380324 COL18A1P39060 1754 aa15.06■□□□□ 0
USP3-202ENST00000380324 BRINP3Q76B58 766 aa15.06■□□□□ 0
USP3-202ENST00000380324 KCNQ3O43525 872 aa15.05■□□□□ 0
USP3-202ENST00000380324 CSB-PGBD3P0DP91 1061 aa15.05■□□□□ 0
USP3-202ENST00000380324 SPATA31A3Q5VYP0 1347 aa15.05■□□□□ -0
USP3-202ENST00000380324 BTBD11A6QL63 1104 aa15.05■□□□□ -0
USP3-202ENST00000380324 EIF2S2P20042 333 aaKnown RBP15.05■□□□□ -0
USP3-202ENST00000380324 SLC4A3P48751 1232 aa15.04■□□□□ -0
USP3-202ENST00000380324 RNMTO43148 476 aaKnown RBP15.04■□□□□ -0
USP3-202ENST00000380324 CCT4P50991 539 aaKnown RBP15.04■□□□□ -0
USP3-202ENST00000380324 EIF4A1P60842 406 aaKnown RBP15.04■□□□□ -0
USP3-202ENST00000380324 CEP85Q6P2H3 762 aa15.04■□□□□ -0
USP3-202ENST00000380324 RAPGEF4Q8WZA2 1011 aa15.04■□□□□ -0
USP3-202ENST00000380324 N4BP2Q86UW6 1770 aaPredicted RBP15.03■□□□□ -0
USP3-202ENST00000380324 UPF2Q9HAU5 1272 aaKnown RBP15.03■□□□□ -0
USP3-202ENST00000380324 MEGF6O75095 1541 aa15.03■□□□□ -0
USP3-202ENST00000380324 SOS1Q07889 1333 aaPredicted RBP15.03■□□□□ -0
USP3-202ENST00000380324 SIPA1L3O60292 1781 aaPredicted RBP15.03■□□□□ -0
USP3-202ENST00000380324 ANKRD44Q8N8A2 993 aa15.03■□□□□ -0
USP3-202ENST00000380324 NBR1Q14596 966 aa15.02■□□□□ -0
USP3-202ENST00000380324 PHAXQ9H814 394 aaKnown RBP15.01□□□□□ -0.01
USP3-202ENST00000380324 DAXXQ9UER7 740 aaPredicted RBP15.01□□□□□ -0.01
USP3-202ENST00000380324 OVOS2A0A0G2JMS6 1433 aa15.01□□□□□ -0.01
USP3-202ENST00000380324 APBB1O00213 710 aa15.01□□□□□ -0.01
USP3-202ENST00000380324 CHPF2Q9P2E5 772 aa15.01□□□□□ -0.01
USP3-202ENST00000380324 SCN11AQ9UI33 1791 aa15□□□□□ -0.01
USP3-202ENST00000380324 ANXA1P04083 346 aa15□□□□□ -0.01
USP3-202ENST00000380324 MFAP1P55081 439 aaKnown RBP15□□□□□ -0.01
USP3-202ENST00000380324 RPAP2Q8IXW5 612 aaPredicted RBP15□□□□□ -0.01
USP3-202ENST00000380324 SLAIN2Q9P270 581 aa15□□□□□ -0.01
USP3-202ENST00000380324 ADAMTS7Q9UKP4 1686 aa14.99□□□□□ -0.01
USP3-202ENST00000380324 DCTPP1Q9H773 170 aa14.99□□□□□ -0.01
USP3-202ENST00000380324 TATP17735 454 aaPredicted RBP14.99□□□□□ -0.01
USP3-202ENST00000380324 PXDNLA1KZ92 1463 aa14.98□□□□□ -0.01
USP3-202ENST00000380324 ABCC6O95255 1503 aa14.98□□□□□ -0.01
USP3-202ENST00000380324 KDM6AO15550 1401 aaPredicted RBP14.98□□□□□ -0.01
USP3-202ENST00000380324 HOXB7P09629 217 aa14.98□□□□□ -0.01
USP3-202ENST00000380324 TBC1D32Q96NH3 1257 aa14.98□□□□□ -0.01
USP3-202ENST00000380324 PRDM11Q9NQV5 511 aa14.98□□□□□ -0.01
USP3-202ENST00000380324 CPDO75976 1380 aa14.98□□□□□ -0.01
USP3-202ENST00000380324 ABCA3Q99758 1704 aa14.97□□□□□ -0.01
USP3-202ENST00000380324 GNAI2P04899 355 aa14.97□□□□□ -0.01
USP3-202ENST00000380324 BMP2KLQ5H9B9 411 aa14.97□□□□□ -0.01
USP3-202ENST00000380324 PRAMEF22A3QJZ6 481 aa14.97□□□□□ -0.01
USP3-202ENST00000380324 PKD1L3Q7Z443 1732 aa14.96□□□□□ -0.01
USP3-202ENST00000380324 HMMRO75330 724 aa14.96□□□□□ -0.01
USP3-202ENST00000380324 SPG7Q9UQ90 795 aa14.96□□□□□ -0.01
USP3-202ENST00000380324 SOS2Q07890 1332 aaPredicted RBP14.95□□□□□ -0.02
USP3-202ENST00000380324 SMARCA5O60264 1052 aaPredicted RBP14.95□□□□□ -0.02
USP3-202ENST00000380324 PHKG2P15735 406 aa14.95□□□□□ -0.02
USP3-202ENST00000380324 SLC39A6Q13433 755 aa14.95□□□□□ -0.02
USP3-202ENST00000380324 C5P01031 1676 aa14.95□□□□□ -0.02
USP3-202ENST00000380324 GIGYF1O75420 1035 aaPredicted RBP14.94□□□□□ -0.02
USP3-202ENST00000380324 GNAI3P08754 354 aa14.94□□□□□ -0.02
USP3-202ENST00000380324 C16orf71Q8IYS4 520 aaPredicted RBP14.94□□□□□ -0.02
USP3-202ENST00000380324 OTUD7AQ8TE49 926 aaPredicted RBP14.94□□□□□ -0.02
USP3-202ENST00000380324 LRRFIP2Q9Y608 721 aaKnown RBP14.94□□□□□ -0.02
USP3-202ENST00000380324 PI4KAP2A4QPH2 592 aa14.94□□□□□ -0.02
USP3-202ENST00000380324 PI4KAP1Q8N8J0 262 aa14.94□□□□□ -0.02
USP3-202ENST00000380324 PROSER3Q2NL68 480 aa14.93□□□□□ -0.02
USP3-202ENST00000380324 PLEKHM2Q8IWE5 1019 aa14.93□□□□□ -0.02
USP3-202ENST00000380324 SLC52A2Q9HAB3 445 aa14.93□□□□□ -0.02
USP3-202ENST00000380324 EXOC6BQ9Y2D4 811 aa14.93□□□□□ -0.02
USP3-202ENST00000380324 UBTFL1P0CB47 393 aaPredicted RBP14.93□□□□□ -0.02
USP3-202ENST00000380324 GSPT1P15170 499 aaKnown RBP14.93□□□□□ -0.02
USP3-202ENST00000380324 IFNL2Q8IZJ0 200 aa14.93□□□□□ -0.02
USP3-202ENST00000380324 NFATC2IPQ8NCF5 419 aa14.93□□□□□ -0.02
USP3-202ENST00000380324 C22orf23Q9BZE7 217 aa14.93□□□□□ -0.02
USP3-202ENST00000380324 USP44Q9H0E7 712 aa14.93□□□□□ -0.02
USP3-202ENST00000380324 DBF4Q9UBU7 674 aaPredicted RBP14.93□□□□□ -0.02
USP3-202ENST00000380324 NHSL1Q5SYE7 1610 aa14.93□□□□□ -0.02
USP3-202ENST00000380324 PARP4Q9UKK3 1724 aaKnown RBP14.92□□□□□ -0.02
USP3-202ENST00000380324 PNMA6EA0A0J9YXQ4 647 aa14.92□□□□□ -0.02
USP3-202ENST00000380324 CYP27B1O15528 508 aa14.92□□□□□ -0.02
USP3-202ENST00000380324 TOM1L2Q6ZVM7 507 aa14.92□□□□□ -0.02
USP3-202ENST00000380324 SRCIN1Q9C0H9 1055 aa14.92□□□□□ -0.02
USP3-202ENST00000380324 ADCY9O60503 1353 aa14.92□□□□□ -0.02
USP3-202ENST00000380324 ZNF790Q6PG37 636 aa14.92□□□□□ -0.02
USP3-202ENST00000380324 DNAAF4Q8WXU2 420 aa14.92□□□□□ -0.02
USP3-202ENST00000380324 CHMP4AQ9BY43 222 aa14.92□□□□□ -0.02
USP3-202ENST00000380324 HEG1Q9ULI3 1381 aa14.91□□□□□ -0.02
USP3-202ENST00000380324 COL5A2P05997 1499 aaPredicted RBP14.91□□□□□ -0.02
USP3-202ENST00000380324 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.91□□□□□ -0.021e-7■□□□□ 10.9
USP3-202ENST00000380324 WDR17Q8IZU2 1322 aa14.91□□□□□ -0.02
USP3-202ENST00000380324 TBC1D9Q6ZT07 1266 aa14.9□□□□□ -0.02
USP3-202ENST00000380324 BECN1Q14457 450 aa14.89□□□□□ -0.03
USP3-202ENST00000380324 TTC22Q5TAA0 569 aa14.89□□□□□ -0.03
USP3-202ENST00000380324 STRN4Q9NRL3 753 aa14.89□□□□□ -0.03
USP3-202ENST00000380324 MRC1P22897 1456 aa14.89□□□□□ -0.03
USP3-202ENST00000380324 NBPF7P0C2Y1 421 aaPredicted RBP14.89□□□□□ -0.03
USP3-202ENST00000380324 BEND3Q5T5X7 828 aa14.89□□□□□ -0.03
USP3-202ENST00000380324 DCAF5Q96JK2 942 aa14.89□□□□□ -0.03
USP3-202ENST00000380324 MAP3K2Q9Y2U5 619 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms