RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 PHAXQ9H814 394 aaKnown RBP16.63■□□□□ 0.25
CCDC3-202ENST00000378839 CEMIPQ8WUJ3 1361 aa16.63■□□□□ 0.25
CCDC3-202ENST00000378839 PNMA6EA0A0J9YXQ4 647 aa16.63■□□□□ 0.25
CCDC3-202ENST00000378839 FKBP5Q13451 457 aaPredicted RBP16.62■□□□□ 0.25
CCDC3-202ENST00000378839 HSCBQ8IWL3 235 aa16.62■□□□□ 0.25
CCDC3-202ENST00000378839 CCDC30Q5VVM6 783 aa16.62■□□□□ 0.25
CCDC3-202ENST00000378839 TSHZ3Q63HK5 1081 aa16.61■□□□□ 0.25
CCDC3-202ENST00000378839 STK31Q9BXU1 1019 aa16.61■□□□□ 0.25
CCDC3-202ENST00000378839 EXOC6BQ9Y2D4 811 aa16.61■□□□□ 0.25
CCDC3-202ENST00000378839 MED1Q15648 1581 aaPredicted RBP16.61■□□□□ 0.25
CCDC3-202ENST00000378839 CHMP5Q9NZZ3 219 aa16.6■□□□□ 0.25
CCDC3-202ENST00000378839 NPHP4O75161 1426 aaPredicted RBP16.59■□□□□ 0.25
CCDC3-202ENST00000378839 GNAI2P04899 355 aa16.59■□□□□ 0.25
CCDC3-202ENST00000378839 MCM4P33991 863 aa16.59■□□□□ 0.25
CCDC3-202ENST00000378839 USP26Q9BXU7 913 aa16.59■□□□□ 0.25
CCDC3-202ENST00000378839 USP44Q9H0E7 712 aa16.59■□□□□ 0.25
CCDC3-202ENST00000378839 FOXD4L1Q9NU39 408 aa16.59■□□□□ 0.25
CCDC3-202ENST00000378839 PXDNQ92626 1479 aa16.59■□□□□ 0.25
CCDC3-202ENST00000378839 SALL3Q9BXA9 1300 aa16.59■□□□□ 0.25
CCDC3-202ENST00000378839 ARXQ96QS3 562 aa16.59■□□□□ 0.25
CCDC3-202ENST00000378839 AXIN2Q9Y2T1 843 aa16.59■□□□□ 0.25
CCDC3-202ENST00000378839 EIF4A1P60842 406 aaKnown RBP16.58■□□□□ 0.24
CCDC3-202ENST00000378839 GCP02774 474 aa16.58■□□□□ 0.24
CCDC3-202ENST00000378839 LRRFIP2Q9Y608 721 aaKnown RBP16.57■□□□□ 0.24
CCDC3-202ENST00000378839 PDE1AP54750 535 aa16.57■□□□□ 0.24
CCDC3-202ENST00000378839 MPRIPQ6WCQ1 1025 aa16.57■□□□□ 0.24
CCDC3-202ENST00000378839 ARHGEF25Q86VW2 580 aa16.57■□□□□ 0.24
CCDC3-202ENST00000378839 PHRF1Q9P1Y6 1649 aaKnown RBP16.57■□□□□ 0.24
CCDC3-202ENST00000378839 HDGFL1Q5TGJ6 251 aa16.57■□□□□ 0.24
CCDC3-202ENST00000378839 BABAM1Q9NWV8 329 aa16.57■□□□□ 0.24
CCDC3-202ENST00000378839 ANXA1P04083 346 aa16.56■□□□□ 0.24
CCDC3-202ENST00000378839 ATP8B2P98198 1209 aa16.56■□□□□ 0.24
CCDC3-202ENST00000378839 KDM3BQ7LBC6 1761 aa16.56■□□□□ 0.24
CCDC3-202ENST00000378839 EIF2S2P20042 333 aaKnown RBP16.56■□□□□ 0.24
CCDC3-202ENST00000378839 N4BP2Q86UW6 1770 aaPredicted RBP16.55■□□□□ 0.24
CCDC3-202ENST00000378839 OSBPL3Q9H4L5 887 aa16.55■□□□□ 0.24
CCDC3-202ENST00000378839 CHPF2Q9P2E5 772 aa16.55■□□□□ 0.24
CCDC3-202ENST00000378839 SLIT3O75094 1523 aa16.55■□□□□ 0.24
CCDC3-202ENST00000378839 KCNH5Q8NCM2 988 aa16.54■□□□□ 0.24
CCDC3-202ENST00000378839 TUBGCP6Q96RT7 1819 aa16.54■□□□□ 0.24
CCDC3-202ENST00000378839 HMMRO75330 724 aa16.54■□□□□ 0.24
CCDC3-202ENST00000378839 LMO7Q8WWI1 1683 aa16.54■□□□□ 0.24
CCDC3-202ENST00000378839 TRPM3Q9HCF6 1732 aaPredicted RBP16.54■□□□□ 0.24
CCDC3-202ENST00000378839 K7ELQ4 463 aaPredicted RBP16.54■□□□□ 0.24
CCDC3-202ENST00000378839 HSP90AB1P08238 724 aaKnown RBP16.54■□□□□ 0.24
CCDC3-202ENST00000378839 PRAMEF22A3QJZ6 481 aa16.53■□□□□ 0.24
CCDC3-202ENST00000378839 NCAPD2Q15021 1401 aa16.53■□□□□ 0.24
CCDC3-202ENST00000378839 IBTKQ9P2D0 1353 aaPredicted RBP16.53■□□□□ 0.24
CCDC3-202ENST00000378839 ZNF530Q6P9A1 599 aaPredicted RBP16.53■□□□□ 0.24
CCDC3-202ENST00000378839 TNPO1Q92973 898 aaKnown RBP16.53■□□□□ 0.24
CCDC3-202ENST00000378839 LMOD2Q6P5Q4 547 aa16.52■□□□□ 0.24
CCDC3-202ENST00000378839 GNAI3P08754 354 aa16.52■□□□□ 0.24
CCDC3-202ENST00000378839 DDX17Q92841 729 aaKnown RBP16.52■□□□□ 0.24
CCDC3-202ENST00000378839 SOS1Q07889 1333 aaPredicted RBP16.52■□□□□ 0.24
CCDC3-202ENST00000378839 CACNA1FO60840 1977 aa16.52■□□□□ 0.23
CCDC3-202ENST00000378839 NBPF7P0C2Y1 421 aaPredicted RBP16.52■□□□□ 0.23
CCDC3-202ENST00000378839 ANKRD24Q8TF21 1146 aa16.52■□□□□ 0.23
CCDC3-202ENST00000378839 PXDNLA1KZ92 1463 aa16.52■□□□□ 0.23
CCDC3-202ENST00000378839 AKAP4Q5JQC9 854 aa16.51■□□□□ 0.23
CCDC3-202ENST00000378839 LMTK3Q96Q04 1460 aa16.51■□□□□ 0.23
CCDC3-202ENST00000378839 UNC5CLQ8IV45 518 aa16.51■□□□□ 0.23
CCDC3-202ENST00000378839 LRRCC1Q9C099 1032 aa16.51■□□□□ 0.23
CCDC3-202ENST00000378839 BTBD11A6QL63 1104 aa16.5■□□□□ 0.23
CCDC3-202ENST00000378839 PROSER3Q2NL68 480 aa16.5■□□□□ 0.23
CCDC3-202ENST00000378839 RGPD5Q99666 1765 aa16.5■□□□□ 0.23
CCDC3-202ENST00000378839 RNMTO43148 476 aaKnown RBP16.5■□□□□ 0.23
CCDC3-202ENST00000378839 RAB3GAP1Q15042 981 aa16.5■□□□□ 0.23
CCDC3-202ENST00000378839 GZF1Q9H116 711 aaPredicted RBP16.5■□□□□ 0.23
CCDC3-202ENST00000378839 ADCY9O60503 1353 aa16.5■□□□□ 0.23
CCDC3-202ENST00000378839 BEND3Q5T5X7 828 aa16.5■□□□□ 0.23
CCDC3-202ENST00000378839 KRT28Q7Z3Y7 464 aa16.5■□□□□ 0.23
CCDC3-202ENST00000378839 PI4KAP2A4QPH2 592 aa16.49■□□□□ 0.23
CCDC3-202ENST00000378839 PI4KAP1Q8N8J0 262 aa16.49■□□□□ 0.23
CCDC3-202ENST00000378839 C1orf167Q5SNV9 1468 aa16.49■□□□□ 0.23
CCDC3-202ENST00000378839 TRAK2O60296 914 aa16.48■□□□□ 0.23
CCDC3-202ENST00000378839 UBTFL1P0CB47 393 aaPredicted RBP16.48■□□□□ 0.23
CCDC3-202ENST00000378839 PROSER2Q86WR7 435 aaPredicted RBP16.48■□□□□ 0.23
CCDC3-202ENST00000378839 SSH3Q8TE77 659 aa16.48■□□□□ 0.23
CCDC3-202ENST00000378839 IL25Q9H293 177 aa16.48■□□□□ 0.23
CCDC3-202ENST00000378839 IL1RAPL2Q9NP60 686 aa16.48■□□□□ 0.23
CCDC3-202ENST00000378839 MX1P20591 662 aa16.48■□□□□ 0.23
CCDC3-202ENST00000378839 PLEKHO1Q53GL0 409 aaPredicted RBP16.48■□□□□ 0.23
CCDC3-202ENST00000378839 PPP1R42Q7Z4L9 355 aa16.48■□□□□ 0.23
CCDC3-202ENST00000378839 CAMTA1Q9Y6Y1 1673 aa16.48■□□□□ 0.23
CCDC3-202ENST00000378839 POLA2Q14181 598 aa16.47■□□□□ 0.23
CCDC3-202ENST00000378839 SSFA2P28290 1259 aa16.47■□□□□ 0.23
CCDC3-202ENST00000378839 ZC3H6P61129 1189 aaKnown RBP16.47■□□□□ 0.23
CCDC3-202ENST00000378839 RABEP1Q15276 862 aa16.47■□□□□ 0.23
CCDC3-202ENST00000378839 SRCIN1Q9C0H9 1055 aa16.47■□□□□ 0.23
CCDC3-202ENST00000378839 TEFQ10587 303 aa16.46■□□□□ 0.23
CCDC3-202ENST00000378839 HEG1Q9ULI3 1381 aa16.46■□□□□ 0.23
CCDC3-202ENST00000378839 ERC2O15083 957 aa16.46■□□□□ 0.23
CCDC3-202ENST00000378839 NUTM1Q86Y26 1132 aa16.46■□□□□ 0.23
CCDC3-202ENST00000378839 STAP2Q9UGK3 403 aa16.46■□□□□ 0.23
CCDC3-202ENST00000378839 DNAAF4Q8WXU2 420 aa16.46■□□□□ 0.22
CCDC3-202ENST00000378839 CIZ1Q9ULV3 898 aaPredicted RBP16.46■□□□□ 0.22
CCDC3-202ENST00000378839 GIGYF1O75420 1035 aaPredicted RBP16.45■□□□□ 0.22
CCDC3-202ENST00000378839 HOXB7P09629 217 aa16.45■□□□□ 0.22
CCDC3-202ENST00000378839 PKP1Q13835 747 aa16.45■□□□□ 0.22
CCDC3-202ENST00000378839 AMOTQ4VCS5 1084 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms