RNA–Protein interactions for RNA: ENST00000378122.4

PCDHA9-201, Transcript of protocadherin alpha 9, humanhuman

BASIC

Gene PCDHA9, Length 6,900 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9-201ENST00000378122 DDX11Q96FC9 970 aa14.06□□□□□ -0.16
PCDHA9-201ENST00000378122 NKTRP30414 1462 aaKnown RBP14.06□□□□□ -0.16
PCDHA9-201ENST00000378122 TOP2BQ02880 1626 aa14.06□□□□□ -0.16
PCDHA9-201ENST00000378122 FKBP4Q02790 459 aaKnown RBP eCLIP14.06□□□□□ -0.16
PCDHA9-201ENST00000378122 TAF3Q5VWG9 929 aa14.06□□□□□ -0.16
PCDHA9-201ENST00000378122 EXOC5O00471 708 aa14.06□□□□□ -0.16
PCDHA9-201ENST00000378122 MAP3K11Q16584 847 aa14.06□□□□□ -0.16
PCDHA9-201ENST00000378122 LIG1P18858 919 aa14.06□□□□□ -0.16
PCDHA9-201ENST00000378122 SSFA2P28290 1259 aa14.06□□□□□ -0.16
PCDHA9-201ENST00000378122 CENPHQ9H3R5 247 aa14.06□□□□□ -0.16
PCDHA9-201ENST00000378122 CFAP45Q9UL16 551 aa14.06□□□□□ -0.16
PCDHA9-201ENST00000378122 PCF11O94913 1555 aaKnown RBP14.06□□□□□ -0.16
PCDHA9-201ENST00000378122 SYCP1Q15431 976 aa14.05□□□□□ -0.16
PCDHA9-201ENST00000378122 CEP57L1Q8IYX8 460 aa14.05□□□□□ -0.16
PCDHA9-201ENST00000378122 TRIM22Q8IYM9 498 aa14.05□□□□□ -0.16
PCDHA9-201ENST00000378122 MIS18AQ9NYP9 233 aa14.05□□□□□ -0.16
PCDHA9-201ENST00000378122 ERLIN2O94905 339 aa14.05□□□□□ -0.16
PCDHA9-201ENST00000378122 TMPOP42166 694 aaKnown RBP14.05□□□□□ -0.16
PCDHA9-201ENST00000378122 RAI14Q9P0K7 980 aa14.04□□□□□ -0.16
PCDHA9-201ENST00000378122 ANKRD30BQ9BXX2 1392 aa14.04□□□□□ -0.16
PCDHA9-201ENST00000378122 PTPN23Q9H3S7 1636 aa14.04□□□□□ -0.16
PCDHA9-201ENST00000378122 RFX1P22670 979 aa14.04□□□□□ -0.16
PCDHA9-201ENST00000378122 STIM1Q13586 685 aa14.04□□□□□ -0.16
PCDHA9-201ENST00000378122 USHBP1Q8N6Y0 703 aa14.04□□□□□ -0.16
PCDHA9-201ENST00000378122 PLEKHH2Q8IVE3 1493 aa14.04□□□□□ -0.16
PCDHA9-201ENST00000378122 C11orf95C9JLR9 678 aaPredicted RBP14.04□□□□□ -0.16
PCDHA9-201ENST00000378122 EXOC6BQ9Y2D4 811 aa14.04□□□□□ -0.16
PCDHA9-201ENST00000378122 SMTNL1A8MU46 457 aa14.04□□□□□ -0.16
PCDHA9-201ENST00000378122 TNPO1Q92973 898 aaKnown RBP14.04□□□□□ -0.16
PCDHA9-201ENST00000378122 TFCP2L1Q9NZI6 479 aa14.04□□□□□ -0.16
PCDHA9-201ENST00000378122 TBC1D2Q9BYX2 928 aa14.03□□□□□ -0.16
PCDHA9-201ENST00000378122 RTEL1-TNFRSF6BF6WH68 1400 aa14.03□□□□□ -0.16
PCDHA9-201ENST00000378122 CCDC183Q5T5S1 534 aa14.03□□□□□ -0.16
PCDHA9-201ENST00000378122 EP400NLQ6ZTU2 488 aa14.03□□□□□ -0.16
PCDHA9-201ENST00000378122 BTBD11A6QL63 1104 aa14.03□□□□□ -0.16
PCDHA9-201ENST00000378122 ZNF76P36508 570 aa14.03□□□□□ -0.16
PCDHA9-201ENST00000378122 ZNF652Q9Y2D9 606 aa14.03□□□□□ -0.16
PCDHA9-201ENST00000378122 CDK13Q14004 1512 aaKnown RBP14.03□□□□□ -0.16
PCDHA9-201ENST00000378122 STARD3NLO95772 234 aa14.03□□□□□ -0.16
PCDHA9-201ENST00000378122 SEPT11Q9NVA2 429 aaKnown RBP14.02□□□□□ -0.16
PCDHA9-201ENST00000378122 THUMPD2Q9BTF0 503 aaKnown RBP14.02□□□□□ -0.16
PCDHA9-201ENST00000378122 PDCL3Q9H2J4 239 aa14.02□□□□□ -0.16
PCDHA9-201ENST00000378122 IGHMBP2P38935 993 aaKnown RBP14.02□□□□□ -0.17
PCDHA9-201ENST00000378122 NFE2L2Q16236 605 aa14.02□□□□□ -0.17
PCDHA9-201ENST00000378122 FERMT3Q86UX7 667 aa14.02□□□□□ -0.17
PCDHA9-201ENST00000378122 RARSP54136 660 aaKnown RBP14.02□□□□□ -0.17
PCDHA9-201ENST00000378122 PRPF40BQ6NWY9 871 aaKnown RBP14.02□□□□□ -0.17
PCDHA9-201ENST00000378122 TMX1Q9H3N1 280 aa14.02□□□□□ -0.17
PCDHA9-201ENST00000378122 GRIN2BQ13224 1484 aa14.02□□□□□ -0.17
PCDHA9-201ENST00000378122 NEBLO76041 1014 aa14.01□□□□□ -0.17
PCDHA9-201ENST00000378122 SSBP05455 408 aaKnown RBP eCLIP14.01□□□□□ -0.17
PCDHA9-201ENST00000378122 CCDC57Q2TAC2 916 aa14.01□□□□□ -0.17
PCDHA9-201ENST00000378122 ABCF2Q9UG63 623 aa14.01□□□□□ -0.17
PCDHA9-201ENST00000378122 NOL7Q9UMY1 257 aaKnown RBP14.01□□□□□ -0.17
PCDHA9-201ENST00000378122 CASQ1P31415 396 aa14.01□□□□□ -0.17
PCDHA9-201ENST00000378122 CHRNA2Q15822 529 aa14.01□□□□□ -0.17
PCDHA9-201ENST00000378122 TMCO3Q6UWJ1 677 aa14.01□□□□□ -0.17
PCDHA9-201ENST00000378122 RPAP2Q8IXW5 612 aaPredicted RBP14.01□□□□□ -0.17
PCDHA9-201ENST00000378122 GJA3Q9Y6H8 435 aa14.01□□□□□ -0.17
PCDHA9-201ENST00000378122 PTPN14Q15678 1187 aa14.01□□□□□ -0.17
PCDHA9-201ENST00000378122 MX1P20591 662 aa14.01□□□□□ -0.17
PCDHA9-201ENST00000378122 NACAP1Q9BZK3 213 aa14.01□□□□□ -0.17
PCDHA9-201ENST00000378122 CGNQ9P2M7 1197 aaKnown RBP14.01□□□□□ -0.17
PCDHA9-201ENST00000378122 KIAA1328Q86T90 577 aa14.01□□□□□ -0.17
PCDHA9-201ENST00000378122 CDKL5O76039 1030 aa14□□□□□ -0.17
PCDHA9-201ENST00000378122 ENOX2Q16206 610 aaKnown RBP14□□□□□ -0.17
PCDHA9-201ENST00000378122 UBXN4Q92575 508 aa14□□□□□ -0.17
PCDHA9-201ENST00000378122 NEFHP12036 1026 aa14□□□□□ -0.17
PCDHA9-201ENST00000378122 CFAP100Q494V2 611 aa14□□□□□ -0.17
PCDHA9-201ENST00000378122 FCHSD2O94868 740 aa14□□□□□ -0.17
PCDHA9-201ENST00000378122 PPP4R3BQ5MIZ7 849 aa14□□□□□ -0.17
PCDHA9-201ENST00000378122 LRRFIP2Q9Y608 721 aaKnown RBP14□□□□□ -0.17
PCDHA9-201ENST00000378122 NESP48681 1621 aa14□□□□□ -0.17
PCDHA9-201ENST00000378122 ZSCAN25Q6NSZ9 544 aa14□□□□□ -0.17
PCDHA9-201ENST00000378122 IQCEQ6IPM2 695 aa13.99□□□□□ -0.17
PCDHA9-201ENST00000378122 LARP6Q9BRS8 491 aaKnown RBP13.99□□□□□ -0.17
PCDHA9-201ENST00000378122 EPB41L2O43491 1005 aaKnown RBP13.99□□□□□ -0.17
PCDHA9-201ENST00000378122 MCM10Q7L590 875 aa13.99□□□□□ -0.17
PCDHA9-201ENST00000378122 DRC1Q96MC2 740 aa13.99□□□□□ -0.17
PCDHA9-201ENST00000378122 RBM27Q9P2N5 1060 aaKnown RBP13.99□□□□□ -0.17
PCDHA9-201ENST00000378122 KRT32Q14532 448 aa13.99□□□□□ -0.17
PCDHA9-201ENST00000378122 TAX1BP1Q86VP1 789 aa13.99□□□□□ -0.17
PCDHA9-201ENST00000378122 CLIP2Q9UDT6 1046 aa13.99□□□□□ -0.17
PCDHA9-201ENST00000378122 NAIPQ13075 1403 aa13.99□□□□□ -0.17
PCDHA9-201ENST00000378122 ZHX1Q9UKY1 873 aaPredicted RBP13.99□□□□□ -0.17
PCDHA9-201ENST00000378122 PRXQ9BXM0 1461 aa13.98□□□□□ -0.17
PCDHA9-201ENST00000378122 SSH1Q8WYL5 1049 aa13.98□□□□□ -0.17
PCDHA9-201ENST00000378122 ZNF692Q9BU19 519 aaPredicted RBP13.98□□□□□ -0.17
PCDHA9-201ENST00000378122 LUC7LQ9NQ29 371 aaKnown RBP13.98□□□□□ -0.17
PCDHA9-201ENST00000378122 POLA1P09884 1462 aaPredicted RBP13.98□□□□□ -0.17
PCDHA9-201ENST00000378122 SSR1P43307 286 aaKnown RBP13.98□□□□□ -0.17
PCDHA9-201ENST00000378122 TDO2P48775 406 aa13.98□□□□□ -0.17
PCDHA9-201ENST00000378122 SEPT7Q16181 437 aaKnown RBP13.98□□□□□ -0.17
PCDHA9-201ENST00000378122 CCDC148Q8NFR7 591 aa13.98□□□□□ -0.17
PCDHA9-201ENST00000378122 LRP2BPQ9P2M1 347 aa13.98□□□□□ -0.17
PCDHA9-201ENST00000378122 FEZ1Q99689 392 aa13.98□□□□□ -0.17
PCDHA9-201ENST00000378122 TXLNBQ8N3L3 684 aa13.97□□□□□ -0.17
PCDHA9-201ENST00000378122 USP25Q9UHP3 1055 aa13.97□□□□□ -0.17
PCDHA9-201ENST00000378122 LMOD1P29536 600 aaPredicted RBP13.97□□□□□ -0.17
PCDHA9-201ENST00000378122 USP8P40818 1118 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms