RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 SMC6Q96SB8 1091 aa13.48□□□□□ -0.25
VPS13A-205ENST00000376636 CCDC183Q5T5S1 534 aa13.48□□□□□ -0.25
VPS13A-205ENST00000376636 CNTLNQ9NXG0 1405 aa13.48□□□□□ -0.25
VPS13A-205ENST00000376636 KLHL34Q8N239 644 aa13.48□□□□□ -0.25
VPS13A-205ENST00000376636 CUX1P39880 1505 aa13.48□□□□□ -0.25
VPS13A-205ENST00000376636 ZFYP08048 801 aaPredicted RBP13.48□□□□□ -0.25
VPS13A-205ENST00000376636 CLIP2Q9UDT6 1046 aa13.48□□□□□ -0.25
VPS13A-205ENST00000376636 CCT4P50991 539 aaKnown RBP13.47□□□□□ -0.25
VPS13A-205ENST00000376636 PAXBP1Q9Y5B6 917 aa13.47□□□□□ -0.25
VPS13A-205ENST00000376636 MAATS1Q7Z4T9 603 aa13.47□□□□□ -0.25
VPS13A-205ENST00000376636 LMAN1P49257 510 aa13.47□□□□□ -0.25
VPS13A-205ENST00000376636 GTF2F1P35269 517 aaKnown RBP eCLIP13.47□□□□□ -0.25
VPS13A-205ENST00000376636 MXRA7P84157 204 aa13.47□□□□□ -0.25
VPS13A-205ENST00000376636 KIF4AO95239 1232 aa13.47□□□□□ -0.25
VPS13A-205ENST00000376636 MCM5P33992 734 aa13.47□□□□□ -0.25
VPS13A-205ENST00000376636 URI1O94763 535 aaPredicted RBP13.47□□□□□ -0.25
VPS13A-205ENST00000376636 FERMT2Q96AC1 680 aa13.47□□□□□ -0.25
VPS13A-205ENST00000376636 DRC1Q96MC2 740 aa13.47□□□□□ -0.25
VPS13A-205ENST00000376636 BRD4O60885 1362 aaPredicted RBP13.47□□□□□ -0.25
VPS13A-205ENST00000376636 SYCE3A1L190 88 aa13.46□□□□□ -0.25
VPS13A-205ENST00000376636 DYNC1I1O14576 645 aa13.46□□□□□ -0.25
VPS13A-205ENST00000376636 MAP7D1Q3KQU3 841 aa13.46□□□□□ -0.25
VPS13A-205ENST00000376636 SCAND2PQ9GZW5 306 aaPredicted RBP13.46□□□□□ -0.25
VPS13A-205ENST00000376636 SLU7O95391 586 aaKnown RBP13.46□□□□□ -0.25
VPS13A-205ENST00000376636 MRPS9P82933 396 aaKnown RBP13.46□□□□□ -0.25
VPS13A-205ENST00000376636 CFAP58Q5T655 872 aa13.46□□□□□ -0.26
VPS13A-205ENST00000376636 CEP135Q66GS9 1140 aa13.46□□□□□ -0.26
VPS13A-205ENST00000376636 IL27Q8NEV9 243 aa13.46□□□□□ -0.26
VPS13A-205ENST00000376636 IRX3P78415 501 aaPredicted RBP13.45□□□□□ -0.26
VPS13A-205ENST00000376636 PDRG1Q9NUG6 133 aa13.45□□□□□ -0.26
VPS13A-205ENST00000376636 GAS2L2Q8NHY3 880 aa13.45□□□□□ -0.26
VPS13A-205ENST00000376636 CCDC196A0A1B0GTZ2 297 aa13.45□□□□□ -0.26
VPS13A-205ENST00000376636 CCDC172P0C7W6 258 aa13.45□□□□□ -0.26
VPS13A-205ENST00000376636 TDO2P48775 406 aa13.45□□□□□ -0.26
VPS13A-205ENST00000376636 PRDM10Q9NQV6 1147 aa13.45□□□□□ -0.26
VPS13A-205ENST00000376636 RASAL2Q9UJF2 1139 aa13.45□□□□□ -0.26
VPS13A-205ENST00000376636 TTC12Q9H892 705 aaPredicted RBP13.45□□□□□ -0.26
VPS13A-205ENST00000376636 CAVIN2O95810 425 aa13.45□□□□□ -0.26
VPS13A-205ENST00000376636 TUBB4BP68371 445 aa13.44□□□□□ -0.26
VPS13A-205ENST00000376636 TMEM266Q2M3C6 531 aa13.44□□□□□ -0.26
VPS13A-205ENST00000376636 RSRC1Q96IZ7 334 aaKnown RBP13.44□□□□□ -0.26
VPS13A-205ENST00000376636 PPP4R3BQ5MIZ7 849 aa13.44□□□□□ -0.26
VPS13A-205ENST00000376636 CWC25Q9NXE8 425 aaPredicted RBP13.44□□□□□ -0.26
VPS13A-205ENST00000376636 SERPINA10Q9UK55 444 aa13.44□□□□□ -0.26
VPS13A-205ENST00000376636 MINK1Q8N4C8 1332 aaPredicted RBP13.44□□□□□ -0.26
VPS13A-205ENST00000376636 TDRD12Q587J7 1177 aaKnown RBP13.44□□□□□ -0.26
VPS13A-205ENST00000376636 CCDC110Q8TBZ0 833 aa13.44□□□□□ -0.26
VPS13A-205ENST00000376636 PYM1Q9BRP8 204 aaKnown RBP13.44□□□□□ -0.26
VPS13A-205ENST00000376636 JADE2Q9NQC1 790 aa13.44□□□□□ -0.26
VPS13A-205ENST00000376636 TNNT1P13805 278 aa13.44□□□□□ -0.26
VPS13A-205ENST00000376636 MAP3K9P80192 1104 aa13.43□□□□□ -0.26
VPS13A-205ENST00000376636 KIAA0753Q2KHM9 967 aa13.43□□□□□ -0.26
VPS13A-205ENST00000376636 STIM2Q9P246 746 aa13.43□□□□□ -0.26
VPS13A-205ENST00000376636 PDE3AQ14432 1141 aa13.43□□□□□ -0.26
VPS13A-205ENST00000376636 MIPOL1Q8TD10 442 aa13.43□□□□□ -0.26
VPS13A-205ENST00000376636 PSMC4P43686 418 aa13.43□□□□□ -0.26
VPS13A-205ENST00000376636 GOLIM4O00461 696 aa13.43□□□□□ -0.26
VPS13A-205ENST00000376636 MAP4K4O95819 1239 aaPredicted RBP13.43□□□□□ -0.26
VPS13A-205ENST00000376636 TTC21AQ8NDW8 1320 aa13.43□□□□□ -0.26
VPS13A-205ENST00000376636 C16orf45Q96MC5 204 aaPredicted RBP13.42□□□□□ -0.26
VPS13A-205ENST00000376636 SCLT1Q96NL6 688 aa13.42□□□□□ -0.26
VPS13A-205ENST00000376636 KRT222Q8N1A0 295 aa13.42□□□□□ -0.26
VPS13A-205ENST00000376636 MPHOSPH8Q99549 860 aa13.42□□□□□ -0.26
VPS13A-205ENST00000376636 ODF2LQ9ULJ1 636 aa13.42□□□□□ -0.26
VPS13A-205ENST00000376636 U3KPZ7 1027 aaPredicted RBP13.42□□□□□ -0.26
VPS13A-205ENST00000376636 CCDC171Q6TFL3 1326 aa13.42□□□□□ -0.26
VPS13A-205ENST00000376636 TPD52P55327 224 aaPredicted RBP13.42□□□□□ -0.26
VPS13A-205ENST00000376636 DNAJC21Q5F1R6 531 aaKnown RBP13.42□□□□□ -0.26
VPS13A-205ENST00000376636 PRIMPOLQ96LW4 560 aa13.42□□□□□ -0.26
VPS13A-205ENST00000376636 NBPF1Q3BBV0 1214 aa13.42□□□□□ -0.26
VPS13A-205ENST00000376636 CASTP20810 708 aaKnown RBP13.42□□□□□ -0.26
VPS13A-205ENST00000376636 KIF5BP33176 963 aa13.42□□□□□ -0.26
VPS13A-205ENST00000376636 RPUSD2Q8IZ73 545 aaKnown RBP13.42□□□□□ -0.26
VPS13A-205ENST00000376636 RBM5P52756 815 aaKnown RBP eCLIP13.41□□□□□ -0.26
VPS13A-205ENST00000376636 HYPKQ9NX55 129 aa13.41□□□□□ -0.26
VPS13A-205ENST00000376636 STXBP4Q6ZWJ1 553 aa13.41□□□□□ -0.26
VPS13A-205ENST00000376636 HMGB1P09429 215 aaKnown RBP13.41□□□□□ -0.26
VPS13A-205ENST00000376636 EHMT1Q9H9B1 1298 aa13.41□□□□□ -0.26
VPS13A-205ENST00000376636 ARFGAP3Q9NP61 516 aa13.41□□□□□ -0.26
VPS13A-205ENST00000376636 TACC1O75410 805 aa13.41□□□□□ -0.26
VPS13A-205ENST00000376636 HMOX1P09601 288 aa13.41□□□□□ -0.26
VPS13A-205ENST00000376636 CAMK4Q16566 473 aa13.41□□□□□ -0.26
VPS13A-205ENST00000376636 PRPHP41219 470 aa13.41□□□□□ -0.26
VPS13A-205ENST00000376636 SMC1BQ8NDV3 1235 aa13.41□□□□□ -0.26
VPS13A-205ENST00000376636 PRKCSHP14314 528 aaPredicted RBP13.41□□□□□ -0.26
VPS13A-205ENST00000376636 AMPD3Q01432 767 aa13.41□□□□□ -0.26
VPS13A-205ENST00000376636 TMEM87AQ8NBN3 555 aa13.41□□□□□ -0.26
VPS13A-205ENST00000376636 STAC3Q96MF2 364 aa13.41□□□□□ -0.26
VPS13A-205ENST00000376636 ABCC8Q09428 1581 aa13.41□□□□□ -0.26
VPS13A-205ENST00000376636 GMNNO75496 209 aa13.4□□□□□ -0.26
VPS13A-205ENST00000376636 HNRNPMP52272 730 aaKnown RBP eCLIP13.4□□□□□ -0.262e-7■■■■□ 26.4
VPS13A-205ENST00000376636 APBB1IPQ7Z5R6 666 aaPredicted RBP13.4□□□□□ -0.26
VPS13A-205ENST00000376636 PRPF4BQ13523 1007 aaKnown RBP13.4□□□□□ -0.26
VPS13A-205ENST00000376636 SNW1Q13573 536 aaKnown RBP13.4□□□□□ -0.26
VPS13A-205ENST00000376636 PDS5BQ9NTI5 1447 aa13.4□□□□□ -0.26
VPS13A-205ENST00000376636 ATP2A1O14983 1001 aa13.4□□□□□ -0.26
VPS13A-205ENST00000376636 KLHL10Q6JEL2 608 aa13.4□□□□□ -0.26
VPS13A-205ENST00000376636 MPNDQ8N594 471 aa13.4□□□□□ -0.26
VPS13A-205ENST00000376636 FEZ2Q9UHY8 353 aaPredicted RBP13.4□□□□□ -0.26
VPS13A-205ENST00000376636 SPDYE4A6NLX3 237 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms