RNA–Protein interactions for RNA: ENST00000374732.7

USP48-203, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 3,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-203ENST00000374732 ABL2P42684 1182 aa9.64□□□□□ -0.87
USP48-203ENST00000374732 PSME1Q06323 249 aa9.64□□□□□ -0.87
USP48-203ENST00000374732 LRCH2Q5VUJ6 765 aa9.64□□□□□ -0.87
USP48-203ENST00000374732 RSPH9Q9H1X1 276 aaPredicted RBP9.64□□□□□ -0.87
USP48-203ENST00000374732 DONSONQ9NYP3 566 aa9.64□□□□□ -0.87
USP48-203ENST00000374732 CDC42BPAQ5VT25 1732 aa9.63□□□□□ -0.87
USP48-203ENST00000374732 MPHOSPH9Q99550 1183 aa9.63□□□□□ -0.87
USP48-203ENST00000374732 CDC42BPBQ9Y5S2 1711 aa9.63□□□□□ -0.87
USP48-203ENST00000374732 RTEL1-TNFRSF6BF6WH68 1400 aa9.63□□□□□ -0.87
USP48-203ENST00000374732 ABCA6Q8N139 1617 aa9.63□□□□□ -0.87
USP48-203ENST00000374732 SKIV2LQ15477 1246 aaKnown RBP9.63□□□□□ -0.87
USP48-203ENST00000374732 PDILTQ8N807 584 aa9.63□□□□□ -0.87
USP48-203ENST00000374732 PHC3Q8NDX5 983 aa9.63□□□□□ -0.87
USP48-203ENST00000374732 NCOA1Q15788 1441 aa9.62□□□□□ -0.87
USP48-203ENST00000374732 CPS1P31327 1500 aa9.62□□□□□ -0.87
USP48-203ENST00000374732 TGFB3P10600 412 aa9.62□□□□□ -0.87
USP48-203ENST00000374732 DPH6Q7L8W6 267 aa9.62□□□□□ -0.87
USP48-203ENST00000374732 MTERF4Q7Z6M4 381 aaKnown RBP9.62□□□□□ -0.87
USP48-203ENST00000374732 CCDC146Q8IYE0 955 aa9.62□□□□□ -0.87
USP48-203ENST00000374732 NOL10Q9BSC4 688 aaKnown RBP9.62□□□□□ -0.87
USP48-203ENST00000374732 CHIC2Q9UKJ5 165 aa9.62□□□□□ -0.87
USP48-203ENST00000374732 PRR12Q9ULL5 1215 aa9.62□□□□□ -0.87
USP48-203ENST00000374732 ZNF232Q9UNY5 417 aa9.62□□□□□ -0.87
USP48-203ENST00000374732 SYNMO15061 1565 aa9.62□□□□□ -0.87
USP48-203ENST00000374732 ONECUT3O60422 494 aaPredicted RBP9.62□□□□□ -0.87
USP48-203ENST00000374732 GTF2A1P52655 376 aaPredicted RBP9.62□□□□□ -0.87
USP48-203ENST00000374732 L1TD1Q5T7N2 865 aaKnown RBP9.62□□□□□ -0.87
USP48-203ENST00000374732 TAF4BQ92750 862 aa9.62□□□□□ -0.87
USP48-203ENST00000374732 CFDP1Q9UEE9 299 aaPredicted RBP9.62□□□□□ -0.87
USP48-203ENST00000374732 RABL2BQ9UNT1 228 aa9.62□□□□□ -0.87
USP48-203ENST00000374732 EIF2AK4Q9P2K8 1649 aaKnown RBP9.62□□□□□ -0.87
USP48-203ENST00000374732 IFT88Q13099 833 aa9.61□□□□□ -0.87
USP48-203ENST00000374732 CC2D1AQ6P1N0 951 aaPredicted RBP9.61□□□□□ -0.87
USP48-203ENST00000374732 FMNL2Q96PY5 1086 aa9.61□□□□□ -0.87
USP48-203ENST00000374732 SEZ6LQ9BYH1 1024 aa9.61□□□□□ -0.87
USP48-203ENST00000374732 IVNS1ABPQ9Y6Y0 642 aa9.61□□□□□ -0.87
USP48-203ENST00000374732 ARHGEF5Q12774 1597 aa9.61□□□□□ -0.87
USP48-203ENST00000374732 MAST1Q9Y2H9 1570 aa9.61□□□□□ -0.87
USP48-203ENST00000374732 ANKRD30BQ9BXX2 1392 aa9.61□□□□□ -0.87
USP48-203ENST00000374732 SYNRGQ9UMZ2 1314 aa9.61□□□□□ -0.87
USP48-203ENST00000374732 RPRD2Q5VT52 1461 aaKnown RBP9.61□□□□□ -0.87
USP48-203ENST00000374732 CASQ1P31415 396 aa9.61□□□□□ -0.87
USP48-203ENST00000374732 CFAP53Q96M91 514 aa9.61□□□□□ -0.87
USP48-203ENST00000374732 ZNF396Q96N95 335 aaPredicted RBP9.61□□□□□ -0.87
USP48-203ENST00000374732 INO80BQ9C086 356 aaPredicted RBP9.61□□□□□ -0.87
USP48-203ENST00000374732 CAND2O75155 1236 aa9.6□□□□□ -0.87
USP48-203ENST00000374732 TCF3P15923 654 aa9.6□□□□□ -0.87
USP48-203ENST00000374732 TRAPPC8Q9Y2L5 1435 aa9.6□□□□□ -0.87
USP48-203ENST00000374732 KIDINS220Q9ULH0 1771 aa9.6□□□□□ -0.87
USP48-203ENST00000374732 UHMK1Q8TAS1 419 aaKnown RBP9.6□□□□□ -0.87
USP48-203ENST00000374732 UHRF1BP1Q6BDS2 1440 aa9.59□□□□□ -0.87
USP48-203ENST00000374732 TNNT3P45378 269 aaPredicted RBP9.59□□□□□ -0.87
USP48-203ENST00000374732 TRIM52Q96A61 297 aa9.59□□□□□ -0.87
USP48-203ENST00000374732 POM121Q96HA1 1249 aa9.59□□□□□ -0.87
USP48-203ENST00000374732 AGBL1Q96MI9 1066 aa9.59□□□□□ -0.87
USP48-203ENST00000374732 KDM5DQ9BY66 1539 aa9.59□□□□□ -0.87
USP48-203ENST00000374732 ZNF644Q9H582 1327 aaPredicted RBP9.59□□□□□ -0.87
USP48-203ENST00000374732 ANKRD30AQ9BXX3 1397 aa9.59□□□□□ -0.87
USP48-203ENST00000374732 CCDC15Q0P6D6 951 aa9.59□□□□□ -0.87
USP48-203ENST00000374732 PSMD2Q13200 908 aa9.59□□□□□ -0.87
USP48-203ENST00000374732 CDC37L1Q7L3B6 337 aa9.59□□□□□ -0.87
USP48-203ENST00000374732 CWC25Q9NXE8 425 aaPredicted RBP9.59□□□□□ -0.87
USP48-203ENST00000374732 PAGR1Q9BTK6 254 aa9.58□□□□□ -0.88
USP48-203ENST00000374732 TSPYL1Q9H0U9 437 aa9.58□□□□□ -0.88
USP48-203ENST00000374732 DYTNA2CJ06 578 aa9.58□□□□□ -0.88
USP48-203ENST00000374732 ESPNB1AK53 854 aa9.58□□□□□ -0.88
USP48-203ENST00000374732 KIF1CO43896 1103 aaKnown RBP9.58□□□□□ -0.88
USP48-203ENST00000374732 LARGE2Q8N3Y3 721 aa9.58□□□□□ -0.88
USP48-203ENST00000374732 RPS6KC1Q96S38 1066 aa9.58□□□□□ -0.88
USP48-203ENST00000374732 DUSP9Q99956 384 aaKnown RBP9.58□□□□□ -0.88
USP48-203ENST00000374732 GOPCQ9HD26 462 aa9.58□□□□□ -0.88
USP48-203ENST00000374732 PZPP20742 1482 aa9.58□□□□□ -0.88
USP48-203ENST00000374732 MYO3AQ8NEV4 1616 aa9.58□□□□□ -0.88
USP48-203ENST00000374732 RRM1P23921 792 aa9.58□□□□□ -0.88
USP48-203ENST00000374732 UBXN4Q92575 508 aa9.58□□□□□ -0.88
USP48-203ENST00000374732 BIN2Q9UBW5 565 aaPredicted RBP9.58□□□□□ -0.88
USP48-203ENST00000374732 SUN2Q9UH99 717 aa9.58□□□□□ -0.88
USP48-203ENST00000374732 DDX49Q9Y6V7 483 aaKnown RBP9.58□□□□□ -0.88
USP48-203ENST00000374732 RNF17Q9BXT8 1623 aaKnown RBP9.57□□□□□ -0.88
USP48-203ENST00000374732 POLR1AO95602 1720 aaPredicted RBP9.57□□□□□ -0.88
USP48-203ENST00000374732 PSMC1P62191 440 aaKnown RBP9.57□□□□□ -0.88
USP48-203ENST00000374732 POU5F1Q01860 360 aaKnown RBP9.57□□□□□ -0.88
USP48-203ENST00000374732 TSR1Q2NL82 804 aaKnown RBP9.57□□□□□ -0.88
USP48-203ENST00000374732 SPATA31D1Q6ZQQ2 1576 aa9.57□□□□□ -0.88
USP48-203ENST00000374732 SAMD9LQ8IVG5 1584 aa9.57□□□□□ -0.88
USP48-203ENST00000374732 LONRF1Q17RB8 773 aa9.57□□□□□ -0.88
USP48-203ENST00000374732 ABCF2Q9UG63 623 aa9.57□□□□□ -0.88
USP48-203ENST00000374732 hCG_2014768A0A024R1R8 64 aa9.56□□□□□ -0.88
USP48-203ENST00000374732 FAM163BP0C2L3 166 aa9.56□□□□□ -0.88
USP48-203ENST00000374732 NKX1-1Q15270 411 aaPredicted RBP9.56□□□□□ -0.88
USP48-203ENST00000374732 DZIP3Q86Y13 1208 aaKnown RBP9.56□□□□□ -0.88
USP48-203ENST00000374732 CCDC47Q96A33 483 aaKnown RBP9.56□□□□□ -0.88
USP48-203ENST00000374732 CHCHD3Q9NX63 227 aaKnown RBP9.56□□□□□ -0.88
USP48-203ENST00000374732 HDLBPQ00341 1268 aaKnown RBP9.56□□□□□ -0.88
USP48-203ENST00000374732 JMYQ8N9B5 988 aa9.56□□□□□ -0.88
USP48-203ENST00000374732 FAM212AQ96EL1 285 aa9.56□□□□□ -0.88
USP48-203ENST00000374732 IRAK4Q9NWZ3 460 aa9.56□□□□□ -0.88
USP48-203ENST00000374732 RIPK4P57078 832 aa9.56□□□□□ -0.88
USP48-203ENST00000374732 MORC1Q86VD1 984 aa9.56□□□□□ -0.88
USP48-203ENST00000374732 MED14O60244 1454 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms