RNA–Protein interactions for RNA: ENST00000373264.4

CDK9-201, Transcript of cyclin dependent kinase 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDK9, Length 2,463 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK9-201ENST00000373264 ORAI2Q96SN7 254 aa29.48■■■□□ 2.31
CDK9-201ENST00000373264 IP6K1Q92551 441 aa29.47■■■□□ 2.31
CDK9-201ENST00000373264 USP26Q9BXU7 913 aa29.47■■■□□ 2.31
CDK9-201ENST00000373264 EIF2S2P20042 333 aaKnown RBP29.46■■■□□ 2.31
CDK9-201ENST00000373264 K7ELQ4 463 aaPredicted RBP29.46■■■□□ 2.31
CDK9-201ENST00000373264 TNPO1Q92973 898 aaKnown RBP29.46■■■□□ 2.31
CDK9-201ENST00000373264 RGPD2P0DJD1 1756 aa29.46■■■□□ 2.31
CDK9-201ENST00000373264 HMMRO75330 724 aa29.45■■■□□ 2.31
CDK9-201ENST00000373264 LRRFIP2Q9Y608 721 aaKnown RBP29.45■■■□□ 2.31
CDK9-201ENST00000373264 HSP90AA1P07900 732 aaKnown RBP29.45■■■□□ 2.3
CDK9-201ENST00000373264 HDGFL1Q5TGJ6 251 aa29.44■■■□□ 2.3
CDK9-201ENST00000373264 USP54Q70EL1 1684 aa29.44■■■□□ 2.3
CDK9-201ENST00000373264 PDE1AP54750 535 aa29.44■■■□□ 2.3
CDK9-201ENST00000373264 NFAT5O94916 1531 aa29.43■■■□□ 2.3
CDK9-201ENST00000373264 ANXA1P04083 346 aa29.43■■■□□ 2.3
CDK9-201ENST00000373264 TRAK2O60296 914 aa29.42■■■□□ 2.3
CDK9-201ENST00000373264 LMOD2Q6P5Q4 547 aa29.42■■■□□ 2.3
CDK9-201ENST00000373264 USP44Q9H0E7 712 aa29.42■■■□□ 2.3
CDK9-201ENST00000373264 MPRIPQ6WCQ1 1025 aa29.4■■■□□ 2.3
CDK9-201ENST00000373264 CEMIPQ8WUJ3 1361 aa29.38■■■□□ 2.29
CDK9-201ENST00000373264 ATP8B2P98198 1209 aa29.37■■■□□ 2.29
CDK9-201ENST00000373264 ADGRL3Q9HAR2 1447 aa29.37■■■□□ 2.29
CDK9-201ENST00000373264 GNAI3P08754 354 aa29.37■■■□□ 2.29
CDK9-201ENST00000373264 CHPF2Q9P2E5 772 aa29.37■■■□□ 2.29
CDK9-201ENST00000373264 AK9Q5TCS8 1911 aa29.37■■■□□ 2.29
CDK9-201ENST00000373264 EIF4A1P60842 406 aaKnown RBP29.36■■■□□ 2.29
CDK9-201ENST00000373264 RAB3GAP1Q15042 981 aa29.36■■■□□ 2.29
CDK9-201ENST00000373264 LRRCC1Q9C099 1032 aa29.36■■■□□ 2.29
CDK9-201ENST00000373264 SALL3Q9BXA9 1300 aa29.36■■■□□ 2.29
CDK9-201ENST00000373264 SSFA2P28290 1259 aa29.35■■■□□ 2.29
CDK9-201ENST00000373264 ZNF530Q6P9A1 599 aaPredicted RBP29.35■■■□□ 2.29
CDK9-201ENST00000373264 IL1RAPL2Q9NP60 686 aa29.34■■■□□ 2.29
CDK9-201ENST00000373264 GCP02774 474 aa29.34■■■□□ 2.29
CDK9-201ENST00000373264 OSBPL3Q9H4L5 887 aa29.33■■■□□ 2.29
CDK9-201ENST00000373264 RABEP1Q15276 862 aa29.33■■■□□ 2.29
CDK9-201ENST00000373264 UBTFL1P0CB47 393 aaPredicted RBP29.32■■■□□ 2.28
CDK9-201ENST00000373264 AXIN2Q9Y2T1 843 aa29.32■■■□□ 2.28
CDK9-201ENST00000373264 PXDNQ92626 1479 aa29.32■■■□□ 2.28
CDK9-201ENST00000373264 UNC5CLQ8IV45 518 aa29.32■■■□□ 2.28
CDK9-201ENST00000373264 IBTKQ9P2D0 1353 aaPredicted RBP29.32■■■□□ 2.28
CDK9-201ENST00000373264 NBPF7P0C2Y1 421 aaPredicted RBP29.31■■■□□ 2.28
CDK9-201ENST00000373264 MX1P20591 662 aa29.31■■■□□ 2.28
CDK9-201ENST00000373264 CASC1Q6TDU7 716 aa29.31■■■□□ 2.28
CDK9-201ENST00000373264 PRAMEF22A3QJZ6 481 aa29.3■■■□□ 2.28
CDK9-201ENST00000373264 CIZ1Q9ULV3 898 aaPredicted RBP29.3■■■□□ 2.28
CDK9-201ENST00000373264 KCNH5Q8NCM2 988 aa29.3■■■□□ 2.28
CDK9-201ENST00000373264 BABAM1Q9NWV8 329 aa29.3■■■□□ 2.28
CDK9-201ENST00000373264 PI4KAP2A4QPH2 592 aa29.29■■■□□ 2.28
CDK9-201ENST00000373264 BTBD11A6QL63 1104 aa29.29■■■□□ 2.28
CDK9-201ENST00000373264 ERC2O15083 957 aa29.29■■■□□ 2.28
CDK9-201ENST00000373264 PI4KAP1Q8N8J0 262 aa29.29■■■□□ 2.28
CDK9-201ENST00000373264 RILPL2Q969X0 211 aa29.29■■■□□ 2.28
CDK9-201ENST00000373264 CACNA1FO60840 1977 aa29.29■■■□□ 2.28
CDK9-201ENST00000373264 TEFQ10587 303 aa29.28■■■□□ 2.28
CDK9-201ENST00000373264 PKP1Q13835 747 aa29.28■■■□□ 2.28
CDK9-201ENST00000373264 PPP1R42Q7Z4L9 355 aa29.28■■■□□ 2.28
CDK9-201ENST00000373264 ARHGEF25Q86VW2 580 aa29.28■■■□□ 2.28
CDK9-201ENST00000373264 NUTM1Q86Y26 1132 aa29.28■■■□□ 2.28
CDK9-201ENST00000373264 DDX11L8A8MPP1 907 aa29.28■■■□□ 2.28
CDK9-201ENST00000373264 PANK2Q9BZ23 570 aa29.28■■■□□ 2.28
CDK9-201ENST00000373264 XRCC6P12956 609 aaKnown RBP eCLIP29.27■■■□□ 2.28
CDK9-201ENST00000373264 TRIM6-TRIM34B2RNG4 842 aa29.27■■■□□ 2.28
CDK9-201ENST00000373264 SRCIN1Q9C0H9 1055 aa29.27■■■□□ 2.28
CDK9-201ENST00000373264 MED1Q15648 1581 aaPredicted RBP29.26■■■□□ 2.28
CDK9-201ENST00000373264 ZNF142P52746 1687 aaPredicted RBP29.26■■■□□ 2.27
CDK9-201ENST00000373264 ANKRD24Q8TF21 1146 aa29.26■■■□□ 2.27
CDK9-201ENST00000373264 MAP4K4O95819 1239 aaPredicted RBP29.26■■■□□ 2.27
CDK9-201ENST00000373264 PROSER3Q2NL68 480 aa29.26■■■□□ 2.27
CDK9-201ENST00000373264 NPHP4O75161 1426 aaPredicted RBP29.25■■■□□ 2.27
CDK9-201ENST00000373264 REC8O95072 547 aa29.25■■■□□ 2.27
CDK9-201ENST00000373264 AKAP4Q5JQC9 854 aa29.25■■■□□ 2.27
CDK9-201ENST00000373264 ZGPATQ8N5A5 531 aaKnown RBP29.25■■■□□ 2.27
CDK9-201ENST00000373264 IL25Q9H293 177 aa29.25■■■□□ 2.27
CDK9-201ENST00000373264 FSD2A1L4K1 749 aa29.25■■■□□ 2.27
CDK9-201ENST00000373264 GOLGA6L3A6NEY3 463 aa29.24■■■□□ 2.27
CDK9-201ENST00000373264 DDX17Q92841 729 aaKnown RBP29.24■■■□□ 2.27
CDK9-201ENST00000373264 SURF6O75683 361 aaKnown RBP29.23■■■□□ 2.27
CDK9-201ENST00000373264 SOS1Q07889 1333 aaPredicted RBP29.23■■■□□ 2.27
CDK9-201ENST00000373264 TUBGCP6Q96RT7 1819 aa29.23■■■□□ 2.27
CDK9-201ENST00000373264 PLEKHO1Q53GL0 409 aaPredicted RBP29.23■■■□□ 2.27
CDK9-201ENST00000373264 BEND3Q5T5X7 828 aa29.23■■■□□ 2.27
CDK9-201ENST00000373264 SSH3Q8TE77 659 aa29.23■■■□□ 2.27
CDK9-201ENST00000373264 PALD1Q9ULE6 856 aa29.23■■■□□ 2.27
CDK9-201ENST00000373264 KDM3BQ7LBC6 1761 aa29.23■■■□□ 2.27
CDK9-201ENST00000373264 RNMTO43148 476 aaKnown RBP29.22■■■□□ 2.27
CDK9-201ENST00000373264 ESYT1Q9BSJ8 1104 aa29.22■■■□□ 2.27
CDK9-201ENST00000373264 PXDNLA1KZ92 1463 aa29.22■■■□□ 2.27
CDK9-201ENST00000373264 DNAAF4Q8WXU2 420 aa29.22■■■□□ 2.27
CDK9-201ENST00000373264 SRGAP3O43295 1099 aa29.21■■■□□ 2.27
CDK9-201ENST00000373264 ZC3H6P61129 1189 aaKnown RBP29.21■■■□□ 2.27
CDK9-201ENST00000373264 GBP4Q96PP9 640 aa29.21■■■□□ 2.27
CDK9-201ENST00000373264 N4BP2Q86UW6 1770 aaPredicted RBP29.21■■■□□ 2.27
CDK9-201ENST00000373264 ADCY9O60503 1353 aa29.21■■■□□ 2.27
CDK9-201ENST00000373264 CHMLP26374 656 aa29.2■■■□□ 2.27
CDK9-201ENST00000373264 KRT28Q7Z3Y7 464 aa29.2■■■□□ 2.26
CDK9-201ENST00000373264 C1orf141Q5JVX7 400 aa29.19■■■□□ 2.26
CDK9-201ENST00000373264 PROSER2Q86WR7 435 aaPredicted RBP29.19■■■□□ 2.26
CDK9-201ENST00000373264 L1TD1Q5T7N2 865 aaKnown RBP29.18■■■□□ 2.26
CDK9-201ENST00000373264 CHAMP1Q96JM3 812 aa29.18■■■□□ 2.26
CDK9-201ENST00000373264 LMO7Q8WWI1 1683 aa29.18■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 95.7 ms