RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 OVOS2Q6IE36 1432 aa19.96■□□□□ 0.79
SDC4-201ENST00000372733 NUTM2FA1L443 756 aa19.96■□□□□ 0.79
SDC4-201ENST00000372733 MBD3O95983 291 aa19.96■□□□□ 0.79
SDC4-201ENST00000372733 GNAI2P04899 355 aa19.96■□□□□ 0.79
SDC4-201ENST00000372733 ANO2Q9NQ90 1003 aa19.96■□□□□ 0.79
SDC4-201ENST00000372733 ZKSCAN5Q9Y2L8 839 aa19.96■□□□□ 0.79
SDC4-201ENST00000372733 RIMS1Q86UR5 1692 aaKnown RBP19.95■□□□□ 0.78
SDC4-201ENST00000372733 CUL4AQ13619 759 aa19.95■□□□□ 0.78
SDC4-201ENST00000372733 FOXD4L6Q3SYB3 417 aaPredicted RBP19.95■□□□□ 0.78
SDC4-201ENST00000372733 FOXD4L3Q6VB84 417 aaPredicted RBP19.95■□□□□ 0.78
SDC4-201ENST00000372733 MX1P20591 662 aa19.95■□□□□ 0.78
SDC4-201ENST00000372733 RBM10P98175 930 aaKnown RBP19.95■□□□□ 0.78
SDC4-201ENST00000372733 RILPL2Q969X0 211 aa19.95■□□□□ 0.78
SDC4-201ENST00000372733 MAP3K19Q56UN5 1328 aa19.95■□□□□ 0.78
SDC4-201ENST00000372733 RGPD1P0DJD0 1748 aa19.95■□□□□ 0.78
SDC4-201ENST00000372733 LRRCC1Q9C099 1032 aa19.94■□□□□ 0.78
SDC4-201ENST00000372733 PNMA6EA0A0J9YXQ4 647 aa19.94■□□□□ 0.78
SDC4-201ENST00000372733 TRIM6-TRIM34B2RNG4 842 aa19.94■□□□□ 0.78
SDC4-201ENST00000372733 UPF3BQ9BZI7 483 aaKnown RBP19.94■□□□□ 0.78
SDC4-201ENST00000372733 ZMYND15Q9H091 742 aa19.94■□□□□ 0.78
SDC4-201ENST00000372733 TUBGCP6Q96RT7 1819 aa19.94■□□□□ 0.78
SDC4-201ENST00000372733 TECPR2O15040 1411 aa19.93■□□□□ 0.78
SDC4-201ENST00000372733 MCCP23508 829 aa19.93■□□□□ 0.78
SDC4-201ENST00000372733 CHMLP26374 656 aa19.93■□□□□ 0.78
SDC4-201ENST00000372733 MCM2P49736 904 aa19.93■□□□□ 0.78
SDC4-201ENST00000372733 MTHFSDQ2M296 383 aaKnown RBP19.93■□□□□ 0.78
SDC4-201ENST00000372733 PDCL3Q9H2J4 239 aa19.93■□□□□ 0.78
SDC4-201ENST00000372733 ACEP12821 1306 aa19.93■□□□□ 0.78
SDC4-201ENST00000372733 GDPD2Q9HCC8 539 aa19.92■□□□□ 0.78
SDC4-201ENST00000372733 UNC5CLQ8IV45 518 aa19.92■□□□□ 0.78
SDC4-201ENST00000372733 ROBO2Q9HCK4 1378 aa19.92■□□□□ 0.78
SDC4-201ENST00000372733 TERF1P54274 439 aa19.91■□□□□ 0.78
SDC4-201ENST00000372733 RTF1Q92541 710 aaKnown RBP19.91■□□□□ 0.78
SDC4-201ENST00000372733 NECTIN2Q92692 538 aa19.91■□□□□ 0.78
SDC4-201ENST00000372733 CCDC39Q9UFE4 941 aa19.9■□□□□ 0.78
SDC4-201ENST00000372733 IL25Q9H293 177 aa19.9■□□□□ 0.78
SDC4-201ENST00000372733 TSPY26PQ9H489 355 aa19.9■□□□□ 0.78
SDC4-201ENST00000372733 GADD45BO75293 160 aaPredicted RBP19.89■□□□□ 0.78
SDC4-201ENST00000372733 ANAPC15P60006 121 aa19.89■□□□□ 0.78
SDC4-201ENST00000372733 FKBP5Q13451 457 aaPredicted RBP19.89■□□□□ 0.78
SDC4-201ENST00000372733 PKNOX2Q96KN3 472 aa19.89■□□□□ 0.78
SDC4-201ENST00000372733 STK31Q9BXU1 1019 aa19.89■□□□□ 0.78
SDC4-201ENST00000372733 ARHGEF10O15013 1369 aa19.89■□□□□ 0.78
SDC4-201ENST00000372733 UQCRHLA0A096LP55 91 aa19.89■□□□□ 0.77
SDC4-201ENST00000372733 UQCRHP07919 91 aa19.89■□□□□ 0.77
SDC4-201ENST00000372733 FLIIQ13045 1269 aa19.89■□□□□ 0.77
SDC4-201ENST00000372733 INTS4Q96HW7 963 aaKnown RBP19.89■□□□□ 0.77
SDC4-201ENST00000372733 USP6P35125 1406 aa19.89■□□□□ 0.77
SDC4-201ENST00000372733 AGLP35573 1532 aa19.88■□□□□ 0.77
SDC4-201ENST00000372733 NALCNQ8IZF0 1738 aa19.88■□□□□ 0.77
SDC4-201ENST00000372733 FAM13BQ9NYF5 915 aa19.88■□□□□ 0.77
SDC4-201ENST00000372733 LRRFIP2Q9Y608 721 aaKnown RBP19.88■□□□□ 0.77
SDC4-201ENST00000372733 SIRT1Q96EB6 747 aa19.88■□□□□ 0.77
SDC4-201ENST00000372733 SSH2Q76I76 1423 aa19.87■□□□□ 0.77
SDC4-201ENST00000372733 GNAI3P08754 354 aa19.87■□□□□ 0.77
SDC4-201ENST00000372733 MCM5P33992 734 aa19.87■□□□□ 0.77
SDC4-201ENST00000372733 ATP8B2P98198 1209 aa19.87■□□□□ 0.77
SDC4-201ENST00000372733 PPP6R1Q9UPN7 881 aa19.87■□□□□ 0.77
SDC4-201ENST00000372733 USP31Q70CQ4 1352 aa19.86■□□□□ 0.77
SDC4-201ENST00000372733 IL1RAPL2Q9NP60 686 aa19.86■□□□□ 0.77
SDC4-201ENST00000372733 STAP2Q9UGK3 403 aa19.86■□□□□ 0.77
SDC4-201ENST00000372733 PTMAP06454 111 aaKnown RBP19.86■□□□□ 0.77
SDC4-201ENST00000372733 SYAP1Q96A49 352 aaPredicted RBP19.86■□□□□ 0.77
SDC4-201ENST00000372733 FAM208AQ9UK61 1670 aaKnown RBP19.85■□□□□ 0.77
SDC4-201ENST00000372733 CEP170BQ9Y4F5 1589 aaPredicted RBP19.85■□□□□ 0.77
SDC4-201ENST00000372733 TOPAZ1Q8N9V7 1692 aa19.85■□□□□ 0.77
SDC4-201ENST00000372733 XRN1Q8IZH2 1706 aaKnown RBP19.85■□□□□ 0.77
SDC4-201ENST00000372733 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.84■□□□□ 0.77
SDC4-201ENST00000372733 CSPP1Q1MSJ5 1256 aa19.84■□□□□ 0.77
SDC4-201ENST00000372733 USP48Q86UV5 1035 aa19.84■□□□□ 0.77
SDC4-201ENST00000372733 MAP4K4O95819 1239 aaPredicted RBP19.84■□□□□ 0.77
SDC4-201ENST00000372733 MPNDQ8N594 471 aa19.84■□□□□ 0.77
SDC4-201ENST00000372733 TPRNQ4KMQ1 711 aa19.83■□□□□ 0.77
SDC4-201ENST00000372733 NUTM1Q86Y26 1132 aa19.83■□□□□ 0.77
SDC4-201ENST00000372733 FMN2Q9NZ56 1722 aa19.83■□□□□ 0.76
SDC4-201ENST00000372733 PLEKHG3A1L390 1219 aa19.83■□□□□ 0.76
SDC4-201ENST00000372733 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.83■□□□□ 0.76
SDC4-201ENST00000372733 WDR33Q9C0J8 1336 aaKnown RBP19.83■□□□□ 0.76
SDC4-201ENST00000372733 RPAP1Q9BWH6 1393 aaPredicted RBP19.83■□□□□ 0.76
SDC4-201ENST00000372733 FAM69CQ0P6D2 419 aa19.82■□□□□ 0.76
SDC4-201ENST00000372733 CCDC30Q5VVM6 783 aa19.82■□□□□ 0.76
SDC4-201ENST00000372733 IL17RAQ96F46 866 aa19.82■□□□□ 0.76
SDC4-201ENST00000372733 EYA1Q99502 592 aa19.82■□□□□ 0.76
SDC4-201ENST00000372733 KDRP35968 1356 aa19.82■□□□□ 0.76
SDC4-201ENST00000372733 ZBTB7CA1YPR0 619 aa19.82■□□□□ 0.76
SDC4-201ENST00000372733 SRCIN1Q9C0H9 1055 aa19.82■□□□□ 0.76
SDC4-201ENST00000372733 FLT4P35916 1363 aa19.81■□□□□ 0.76
SDC4-201ENST00000372733 HSPA4P34932 840 aa19.81■□□□□ 0.76
SDC4-201ENST00000372733 SOS1Q07889 1333 aaPredicted RBP19.8■□□□□ 0.76
SDC4-201ENST00000372733 PHF14O94880 888 aa19.8■□□□□ 0.76
SDC4-201ENST00000372733 USP44Q9H0E7 712 aa19.8■□□□□ 0.76
SDC4-201ENST00000372733 TSPOAP1O95153 1857 aa19.8■□□□□ 0.76
SDC4-201ENST00000372733 SBNO1A3KN83 1393 aa19.8■□□□□ 0.76
SDC4-201ENST00000372733 LARP6Q9BRS8 491 aaKnown RBP19.8■□□□□ 0.76
SDC4-201ENST00000372733 CNPY2Q9Y2B0 182 aa19.8■□□□□ 0.76
SDC4-201ENST00000372733 IGSF1Q8N6C5 1336 aa19.79■□□□□ 0.76
SDC4-201ENST00000372733 UBTFL1P0CB47 393 aaPredicted RBP19.79■□□□□ 0.76
SDC4-201ENST00000372733 SASS6Q6UVJ0 657 aa19.79■□□□□ 0.76
SDC4-201ENST00000372733 LRRC37A3O60309 1634 aa19.79■□□□□ 0.76
SDC4-201ENST00000372733 AOX1Q06278 1338 aa19.79■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms