RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 SPG7Q9UQ90 795 aa13.48□□□□□ -0.25
PTPRF-203ENST00000372407 ATP7AQ04656 1500 aa13.48□□□□□ -0.25
PTPRF-203ENST00000372407 CBFA2T2O43439 604 aa13.48□□□□□ -0.25
PTPRF-203ENST00000372407 UPF3BQ9BZI7 483 aaKnown RBP13.48□□□□□ -0.25
PTPRF-203ENST00000372407 LUC7LQ9NQ29 371 aaKnown RBP13.48□□□□□ -0.25
PTPRF-203ENST00000372407 AXDND1Q5T1B0 1012 aaPredicted RBP13.47□□□□□ -0.25
PTPRF-203ENST00000372407 FKBP4Q02790 459 aaKnown RBP eCLIP13.47□□□□□ -0.25
PTPRF-203ENST00000372407 HSP90AB2PQ58FF8 381 aa13.47□□□□□ -0.25
PTPRF-203ENST00000372407 THUMPD2Q9BTF0 503 aaKnown RBP13.47□□□□□ -0.25
PTPRF-203ENST00000372407 PRDM11Q9NQV5 511 aa13.47□□□□□ -0.25
PTPRF-203ENST00000372407 NOS1P29475 1434 aa13.47□□□□□ -0.25
PTPRF-203ENST00000372407 MYL6BP14649 208 aa13.47□□□□□ -0.25
PTPRF-203ENST00000372407 STRN4Q9NRL3 753 aa13.47□□□□□ -0.25
PTPRF-203ENST00000372407 CFAP74Q9C0B2 1584 aa13.47□□□□□ -0.25
PTPRF-203ENST00000372407 MAP3K11Q16584 847 aa13.46□□□□□ -0.25
PTPRF-203ENST00000372407 NUDT16Q96DE0 195 aaKnown RBP13.46□□□□□ -0.25
PTPRF-203ENST00000372407 SHANK2Q9UPX8 1470 aa13.46□□□□□ -0.25
PTPRF-203ENST00000372407 NCKAP5LQ9HCH0 1330 aa13.46□□□□□ -0.25
PTPRF-203ENST00000372407 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.46□□□□□ -0.25
PTPRF-203ENST00000372407 CFAP43Q8NDM7 1665 aa13.46□□□□□ -0.25
PTPRF-203ENST00000372407 CCDC69A6NI79 296 aa13.46□□□□□ -0.25
PTPRF-203ENST00000372407 DUSP27Q5VZP5 1158 aa13.46□□□□□ -0.25
PTPRF-203ENST00000372407 LEKR1Q6ZMV7 388 aa13.46□□□□□ -0.25
PTPRF-203ENST00000372407 MPHOSPH8Q99549 860 aa13.46□□□□□ -0.25
PTPRF-203ENST00000372407 UQCRHLA0A096LP55 91 aa13.46□□□□□ -0.25
PTPRF-203ENST00000372407 SYCE3A1L190 88 aa13.46□□□□□ -0.25
PTPRF-203ENST00000372407 UQCRHP07919 91 aa13.46□□□□□ -0.25
PTPRF-203ENST00000372407 MX1P20591 662 aa13.46□□□□□ -0.25
PTPRF-203ENST00000372407 RDXP35241 583 aaKnown RBP13.46□□□□□ -0.25
PTPRF-203ENST00000372407 TSPOAP1O95153 1857 aa13.46□□□□□ -0.26
PTPRF-203ENST00000372407 TCOF1Q13428 1488 aaKnown RBP13.46□□□□□ -0.26
PTPRF-203ENST00000372407 KRT18P05783 430 aaKnown RBP13.46□□□□□ -0.26
PTPRF-203ENST00000372407 NOL7Q9UMY1 257 aaKnown RBP13.46□□□□□ -0.26
PTPRF-203ENST00000372407 MSH6P52701 1360 aa13.45□□□□□ -0.26
PTPRF-203ENST00000372407 BTBD11A6QL63 1104 aa13.45□□□□□ -0.26
PTPRF-203ENST00000372407 CLASP1Q7Z460 1538 aa13.45□□□□□ -0.26
PTPRF-203ENST00000372407 ERLIN1O75477 346 aa13.45□□□□□ -0.26
PTPRF-203ENST00000372407 CASTP20810 708 aaKnown RBP13.45□□□□□ -0.26
PTPRF-203ENST00000372407 ZCCHC11Q5TAX3 1644 aaKnown RBP13.45□□□□□ -0.26
PTPRF-203ENST00000372407 FERMT3Q86UX7 667 aa13.44□□□□□ -0.26
PTPRF-203ENST00000372407 MAPKBP1O60336 1514 aa13.44□□□□□ -0.26
PTPRF-203ENST00000372407 CCDC191Q8NCU4 936 aa13.44□□□□□ -0.26
PTPRF-203ENST00000372407 NUP133Q8WUM0 1156 aa13.44□□□□□ -0.26
PTPRF-203ENST00000372407 GNAT3A8MTJ3 354 aa13.44□□□□□ -0.26
PTPRF-203ENST00000372407 RAB11FIP3O75154 756 aa13.44□□□□□ -0.26
PTPRF-203ENST00000372407 RIMS2Q9UQ26 1411 aa13.44□□□□□ -0.26
PTPRF-203ENST00000372407 NKTRP30414 1462 aaKnown RBP13.44□□□□□ -0.26
PTPRF-203ENST00000372407 RRP9O43818 475 aaKnown RBP13.44□□□□□ -0.26
PTPRF-203ENST00000372407 TOM1L2Q6ZVM7 507 aa13.44□□□□□ -0.26
PTPRF-203ENST00000372407 NUTM1Q86Y26 1132 aa13.44□□□□□ -0.26
PTPRF-203ENST00000372407 SCAND2PQ9GZW5 306 aaPredicted RBP13.44□□□□□ -0.26
PTPRF-203ENST00000372407 PTPRKQ15262 1439 aa13.44□□□□□ -0.26
PTPRF-203ENST00000372407 FAM177A1Q8N128 213 aaPredicted RBP13.43□□□□□ -0.26
PTPRF-203ENST00000372407 DDX54Q8TDD1 881 aaKnown RBP13.43□□□□□ -0.26
PTPRF-203ENST00000372407 TBC1D2Q9BYX2 928 aa13.43□□□□□ -0.26
PTPRF-203ENST00000372407 DEF6Q9H4E7 631 aa13.43□□□□□ -0.26
PTPRF-203ENST00000372407 PHF8Q9UPP1 1060 aa13.43□□□□□ -0.26
PTPRF-203ENST00000372407 YEATS2Q9ULM3 1422 aa13.43□□□□□ -0.26
PTPRF-203ENST00000372407 RIMBP3CA6NJZ7 1639 aa13.43□□□□□ -0.26
PTPRF-203ENST00000372407 RIMBP3BA6NNM3 1639 aa13.43□□□□□ -0.26
PTPRF-203ENST00000372407 RIMBP3Q9UFD9 1639 aa13.43□□□□□ -0.26
PTPRF-203ENST00000372407 SMTNL1A8MU46 457 aa13.43□□□□□ -0.26
PTPRF-203ENST00000372407 SKAP1Q86WV1 359 aa13.43□□□□□ -0.26
PTPRF-203ENST00000372407 TSPYL1Q9H0U9 437 aa13.43□□□□□ -0.26
PTPRF-203ENST00000372407 FOXO3O43524 673 aa13.43□□□□□ -0.26
PTPRF-203ENST00000372407 UBAC1Q9BSL1 405 aa13.43□□□□□ -0.26
PTPRF-203ENST00000372407 LRPPRCP42704 1394 aaKnown RBP13.43□□□□□ -0.26
PTPRF-203ENST00000372407 TXLNBQ8N3L3 684 aa13.43□□□□□ -0.26
PTPRF-203ENST00000372407 DDX11Q96FC9 970 aa13.42□□□□□ -0.26
PTPRF-203ENST00000372407 EIF3JO75822 258 aaKnown RBP13.42□□□□□ -0.26
PTPRF-203ENST00000372407 SYCP1Q15431 976 aa13.42□□□□□ -0.26
PTPRF-203ENST00000372407 STK11IPQ8N1F8 1099 aa13.42□□□□□ -0.26
PTPRF-203ENST00000372407 SOGA3Q5TF21 947 aa13.42□□□□□ -0.26
PTPRF-203ENST00000372407 MCM10Q7L590 875 aa13.42□□□□□ -0.26
PTPRF-203ENST00000372407 SH2B1Q9NRF2 756 aaPredicted RBP13.42□□□□□ -0.26
PTPRF-203ENST00000372407 U3KPZ7 1027 aaPredicted RBP13.42□□□□□ -0.26
PTPRF-203ENST00000372407 CCDC83Q8IWF9 413 aa13.41□□□□□ -0.26
PTPRF-203ENST00000372407 C14orf93Q9H972 538 aaKnown RBP13.41□□□□□ -0.26
PTPRF-203ENST00000372407 TDO2P48775 406 aa13.41□□□□□ -0.26
PTPRF-203ENST00000372407 WASF1Q92558 559 aa13.41□□□□□ -0.26
PTPRF-203ENST00000372407 KIF2AO00139 706 aaPredicted RBP13.41□□□□□ -0.26
PTPRF-203ENST00000372407 UBXN4Q92575 508 aa13.41□□□□□ -0.26
PTPRF-203ENST00000372407 MIS18AQ9NYP9 233 aa13.41□□□□□ -0.26
PTPRF-203ENST00000372407 ERLIN2O94905 339 aa13.41□□□□□ -0.26
PTPRF-203ENST00000372407 IMMTQ16891 758 aaKnown RBP13.41□□□□□ -0.26
PTPRF-203ENST00000372407 CCDC181Q5TID7 509 aa13.41□□□□□ -0.26
PTPRF-203ENST00000372407 PDCL2Q8N4E4 241 aa13.41□□□□□ -0.26
PTPRF-203ENST00000372407 MAGI2Q86UL8 1455 aa13.4□□□□□ -0.26
PTPRF-203ENST00000372407 SMARCA5O60264 1052 aaPredicted RBP13.4□□□□□ -0.26
PTPRF-203ENST00000372407 CFAP100Q494V2 611 aa13.4□□□□□ -0.26
PTPRF-203ENST00000372407 PRPF40BQ6NWY9 871 aaKnown RBP13.4□□□□□ -0.26
PTPRF-203ENST00000372407 TRIM27P14373 513 aa13.4□□□□□ -0.26
PTPRF-203ENST00000372407 LARP1Q6PKG0 1096 aaKnown RBP13.4□□□□□ -0.26
PTPRF-203ENST00000372407 BMP2KQ9NSY1 1161 aaPredicted RBP13.4□□□□□ -0.26
PTPRF-203ENST00000372407 MYO5CQ9NQX4 1742 aa13.4□□□□□ -0.27
PTPRF-203ENST00000372407 CCDC183Q5T5S1 534 aa13.4□□□□□ -0.27
PTPRF-203ENST00000372407 GOLGA6L10A6NI86 522 aa13.39□□□□□ -0.27
PTPRF-203ENST00000372407 WASLO00401 505 aaPredicted RBP13.39□□□□□ -0.27
PTPRF-203ENST00000372407 IDH1O75874 414 aaKnown RBP13.39□□□□□ -0.27
PTPRF-203ENST00000372407 SFPQP23246 707 aaKnown RBP eCLIP13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms