RNA–Protein interactions for RNA: ENST00000372056.8

LDB3-203, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,868 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-203ENST00000372056 RNMTO43148 476 aaKnown RBP16.52■□□□□ 0.24
LDB3-203ENST00000372056 ADAMTS2O95450 1211 aa16.52■□□□□ 0.24
LDB3-203ENST00000372056 PHKG2P15735 406 aa16.52■□□□□ 0.24
LDB3-203ENST00000372056 NUTM2AQ8IVF1 878 aaPredicted RBP16.52■□□□□ 0.24
LDB3-203ENST00000372056 C8orf58Q8NAV2 365 aa16.52■□□□□ 0.24
LDB3-203ENST00000372056 TSPYL4Q9UJ04 414 aa16.52■□□□□ 0.24
LDB3-203ENST00000372056 PLCH1Q4KWH8 1693 aa16.52■□□□□ 0.24
LDB3-203ENST00000372056 TWISTNBQ3B726 338 aaPredicted RBP16.52■□□□□ 0.23
LDB3-203ENST00000372056 MEGF6O75095 1541 aa16.52■□□□□ 0.23
LDB3-203ENST00000372056 ADAMTS7Q9UKP4 1686 aa16.51■□□□□ 0.23
LDB3-203ENST00000372056 IGHDP01880 384 aa16.51■□□□□ 0.23
LDB3-203ENST00000372056 NKX1-1Q15270 411 aaPredicted RBP16.51■□□□□ 0.23
LDB3-203ENST00000372056 UNC5CLQ8IV45 518 aa16.51■□□□□ 0.23
LDB3-203ENST00000372056 FNBP4Q8N3X1 1017 aaPredicted RBP16.51■□□□□ 0.23
LDB3-203ENST00000372056 HOXB7P09629 217 aa16.5■□□□□ 0.23
LDB3-203ENST00000372056 SKAP1Q86WV1 359 aa16.5■□□□□ 0.23
LDB3-203ENST00000372056 MRPL50Q8N5N7 158 aaKnown RBP16.5■□□□□ 0.23
LDB3-203ENST00000372056 NGLY1Q96IV0 654 aa16.5■□□□□ 0.23
LDB3-203ENST00000372056 BARGINQ6ZT62 677 aa16.5■□□□□ 0.23
LDB3-203ENST00000372056 ERVV-2B6SEH9 535 aa16.49■□□□□ 0.23
LDB3-203ENST00000372056 ELL2O00472 640 aaPredicted RBP16.49■□□□□ 0.23
LDB3-203ENST00000372056 HSPA1LP34931 641 aa16.49■□□□□ 0.23
LDB3-203ENST00000372056 NRAPQ86VF7 1730 aa16.49■□□□□ 0.23
LDB3-203ENST00000372056 ARHGAP45Q92619 1136 aa16.48■□□□□ 0.23
LDB3-203ENST00000372056 DDX19BQ9UMR2 479 aa16.48■□□□□ 0.23
LDB3-203ENST00000372056 PCDHB15Q9Y5E8 787 aa16.48■□□□□ 0.23
LDB3-203ENST00000372056 SPATA31A1Q5TZJ5 1347 aa16.48■□□□□ 0.23
LDB3-203ENST00000372056 EXOC5O00471 708 aa16.48■□□□□ 0.23
LDB3-203ENST00000372056 VPS72Q15906 364 aa16.48■□□□□ 0.23
LDB3-203ENST00000372056 DISP2A7MBM2 1401 aa16.47■□□□□ 0.23
LDB3-203ENST00000372056 SPATA31A5Q5VU36 1347 aa16.47■□□□□ 0.23
LDB3-203ENST00000372056 SPATA31A7Q8IWB4 1347 aa16.47■□□□□ 0.23
LDB3-203ENST00000372056 MPRIPQ6WCQ1 1025 aa16.47■□□□□ 0.23
LDB3-203ENST00000372056 ITPRIPQ8IWB1 547 aa16.47■□□□□ 0.23
LDB3-203ENST00000372056 TMEM57Q8N5G2 664 aa16.47■□□□□ 0.23
LDB3-203ENST00000372056 SCN11AQ9UI33 1791 aa16.47■□□□□ 0.23
LDB3-203ENST00000372056 BTBD11A6QL63 1104 aa16.46■□□□□ 0.23
LDB3-203ENST00000372056 SLC52A2Q9HAB3 445 aa16.46■□□□□ 0.23
LDB3-203ENST00000372056 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.46■□□□□ 0.23
LDB3-203ENST00000372056 MEX3CQ5U5Q3 659 aaKnown RBP16.46■□□□□ 0.22
LDB3-203ENST00000372056 CHMP4BQ9H444 224 aaKnown RBP16.46■□□□□ 0.22
LDB3-203ENST00000372056 LGR6Q9HBX8 967 aa16.46■□□□□ 0.22
LDB3-203ENST00000372056 CYP27B1O15528 508 aa16.45■□□□□ 0.22
LDB3-203ENST00000372056 KRT24Q2M2I5 525 aa16.44■□□□□ 0.22
LDB3-203ENST00000372056 C8orf37Q96NL8 207 aa16.44■□□□□ 0.22
LDB3-203ENST00000372056 MRC1P22897 1456 aa16.44■□□□□ 0.22
LDB3-203ENST00000372056 PDE4AP27815 886 aa16.44■□□□□ 0.22
LDB3-203ENST00000372056 CABP4P57796 275 aa16.44■□□□□ 0.22
LDB3-203ENST00000372056 CCDC30Q5VVM6 783 aa16.44■□□□□ 0.22
LDB3-203ENST00000372056 BACH2Q9BYV9 841 aa16.43■□□□□ 0.22
LDB3-203ENST00000372056 ZBTB40Q9NUA8 1239 aa16.43■□□□□ 0.22
LDB3-203ENST00000372056 USP35Q9P2H5 1018 aa16.43■□□□□ 0.22
LDB3-203ENST00000372056 VIRMAQ69YN4 1812 aaKnown RBP16.43■□□□□ 0.22
LDB3-203ENST00000372056 ABCC4O15439 1325 aa16.42■□□□□ 0.22
LDB3-203ENST00000372056 STK31Q9BXU1 1019 aa16.42■□□□□ 0.22
LDB3-203ENST00000372056 RWDD1Q9H446 243 aaPredicted RBP16.42■□□□□ 0.22
LDB3-203ENST00000372056 MIS18AQ9NYP9 233 aa16.42■□□□□ 0.22
LDB3-203ENST00000372056 USP21Q9UK80 565 aa16.42■□□□□ 0.22
LDB3-203ENST00000372056 CCDC9Q9Y3X0 531 aaKnown RBP16.42■□□□□ 0.22
LDB3-203ENST00000372056 CACNA1FO60840 1977 aa16.41■□□□□ 0.22
LDB3-203ENST00000372056 WNK3Q9BYP7 1800 aa16.41■□□□□ 0.22
LDB3-203ENST00000372056 SIPA1L3O60292 1781 aaPredicted RBP16.41■□□□□ 0.22
LDB3-203ENST00000372056 KDM3BQ7LBC6 1761 aa16.41■□□□□ 0.22
LDB3-203ENST00000372056 BCL9LQ86UU0 1499 aa16.41■□□□□ 0.22
LDB3-203ENST00000372056 KDM6AO15550 1401 aaPredicted RBP16.41■□□□□ 0.22
LDB3-203ENST00000372056 TNS2Q63HR2 1409 aa16.41■□□□□ 0.22
LDB3-203ENST00000372056 EIF4A1P60842 406 aaKnown RBP16.41■□□□□ 0.22
LDB3-203ENST00000372056 DDB1Q16531 1140 aa16.41■□□□□ 0.22
LDB3-203ENST00000372056 API5Q9BZZ5 524 aaKnown RBP16.41■□□□□ 0.22
LDB3-203ENST00000372056 LRP6O75581 1613 aa16.41■□□□□ 0.22
LDB3-203ENST00000372056 PTPRCP08575 1304 aa16.4■□□□□ 0.22
LDB3-203ENST00000372056 TTC5Q8N0Z6 440 aa16.4■□□□□ 0.22
LDB3-203ENST00000372056 HDAC1Q13547 482 aaPredicted RBP16.39■□□□□ 0.22
LDB3-203ENST00000372056 DDX54Q8TDD1 881 aaKnown RBP16.39■□□□□ 0.22
LDB3-203ENST00000372056 RGS3P49796 1198 aa16.39■□□□□ 0.21
LDB3-203ENST00000372056 ZNF790Q6PG37 636 aa16.39■□□□□ 0.21
LDB3-203ENST00000372056 NFATC2IPQ8NCF5 419 aa16.39■□□□□ 0.21
LDB3-203ENST00000372056 TRPC5Q9UL62 973 aaPredicted RBP16.39■□□□□ 0.21
LDB3-203ENST00000372056 HEG1Q9ULI3 1381 aa16.38■□□□□ 0.21
LDB3-203ENST00000372056 RGS12O14924 1447 aa16.37■□□□□ 0.21
LDB3-203ENST00000372056 ZBTB7BO15156 539 aaPredicted RBP16.37■□□□□ 0.21
LDB3-203ENST00000372056 FMNL2Q96PY5 1086 aa16.37■□□□□ 0.21
LDB3-203ENST00000372056 SHANK3Q9BYB0 1731 aa16.36■□□□□ 0.21
LDB3-203ENST00000372056 TMOD3Q9NYL9 352 aa16.36■□□□□ 0.21
LDB3-203ENST00000372056 TEX13AQ9BXU3 409 aaPredicted RBP16.35■□□□□ 0.21
LDB3-203ENST00000372056 GIGYF1O75420 1035 aaPredicted RBP16.35■□□□□ 0.21
LDB3-203ENST00000372056 SNRPA1P09661 255 aaKnown RBP16.35■□□□□ 0.21
LDB3-203ENST00000372056 HDGFL1Q5TGJ6 251 aa16.35■□□□□ 0.21
LDB3-203ENST00000372056 FAM161AQ3B820 660 aa16.34■□□□□ 0.21
LDB3-203ENST00000372056 FBXO41Q8TF61 875 aa16.34■□□□□ 0.21
LDB3-203ENST00000372056 GJD4Q96KN9 370 aaPredicted RBP16.34■□□□□ 0.21
LDB3-203ENST00000372056 DBF4Q9UBU7 674 aaPredicted RBP16.34■□□□□ 0.21
LDB3-203ENST00000372056 PDZRN3Q9UPQ7 1066 aa16.34■□□□□ 0.21
LDB3-203ENST00000372056 AFF2P51816 1311 aa16.34■□□□□ 0.21
LDB3-203ENST00000372056 ONECUT3O60422 494 aaPredicted RBP16.33■□□□□ 0.21
LDB3-203ENST00000372056 SLC4A2P04920 1241 aa16.33■□□□□ 0.21
LDB3-203ENST00000372056 ZNF772Q68DY9 489 aaPredicted RBP16.33■□□□□ 0.21
LDB3-203ENST00000372056 INTS3Q68E01 1043 aaKnown RBP16.33■□□□□ 0.21
LDB3-203ENST00000372056 VSIG10Q8N0Z9 540 aa16.33■□□□□ 0.21
LDB3-203ENST00000372056 ERBB4Q15303 1308 aa16.33■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms