RNA–Protein interactions for RNA: ENST00000369530.5

CSDE1-204, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 3,774 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-204ENST00000369530 NUTM2GQ5VZR2 741 aa9.22□□□□□ -0.93
CSDE1-204ENST00000369530 ZNF521Q96K83 1311 aa9.22□□□□□ -0.93
CSDE1-204ENST00000369530 PRDM11Q9NQV5 511 aa9.22□□□□□ -0.93
CSDE1-204ENST00000369530 ZNF827Q17R98 1081 aa9.22□□□□□ -0.93
CSDE1-204ENST00000369530 PNPLA7Q6ZV29 1317 aa9.21□□□□□ -0.93
CSDE1-204ENST00000369530 FKBP8Q14318 412 aa9.21□□□□□ -0.94
CSDE1-204ENST00000369530 KCNQ2O43526 872 aa9.2□□□□□ -0.94
CSDE1-204ENST00000369530 PPP2R1AP30153 589 aa9.2□□□□□ -0.94
CSDE1-204ENST00000369530 PCDH11XQ9BZA7 1347 aa9.2□□□□□ -0.94
CSDE1-204ENST00000369530 PCDH11YQ9BZA8 1340 aa9.2□□□□□ -0.94
CSDE1-204ENST00000369530 IL27Q8NEV9 243 aa9.2□□□□□ -0.94
CSDE1-204ENST00000369530 COG3Q96JB2 828 aa9.2□□□□□ -0.94
CSDE1-204ENST00000369530 RGL2O15211 777 aa9.2□□□□□ -0.94
CSDE1-204ENST00000369530 SPEF2Q9C093 1822 aa9.2□□□□□ -0.94
CSDE1-204ENST00000369530 EZH2Q15910 746 aaKnown RBP9.19□□□□□ -0.94
CSDE1-204ENST00000369530 COL4A5P29400 1685 aa9.19□□□□□ -0.94
CSDE1-204ENST00000369530 CNTNAP4Q9C0A0 1308 aa9.18□□□□□ -0.94
CSDE1-204ENST00000369530 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.18□□□□□ -0.94
CSDE1-204ENST00000369530 NOP58Q9Y2X3 529 aaKnown RBP9.18□□□□□ -0.94
CSDE1-204ENST00000369530 SLC27A3Q5K4L6 730 aa9.17□□□□□ -0.94
CSDE1-204ENST00000369530 ERVV-2B6SEH9 535 aa9.17□□□□□ -0.94
CSDE1-204ENST00000369530 ZNF853P0CG23 659 aa9.17□□□□□ -0.94
CSDE1-204ENST00000369530 ATG3Q9NT62 314 aa9.17□□□□□ -0.94
CSDE1-204ENST00000369530 USP35Q9P2H5 1018 aa9.17□□□□□ -0.94
CSDE1-204ENST00000369530 SLX4Q8IY92 1834 aa9.17□□□□□ -0.94
CSDE1-204ENST00000369530 AEBP1Q8IUX7 1158 aa9.17□□□□□ -0.94
CSDE1-204ENST00000369530 NEFLP07196 543 aa9.16□□□□□ -0.94
CSDE1-204ENST00000369530 PIGBQ92521 554 aa9.16□□□□□ -0.94
CSDE1-204ENST00000369530 PDGFDQ9GZP0 370 aaPredicted RBP9.16□□□□□ -0.94
CSDE1-204ENST00000369530 ITPK1Q13572 414 aa9.15□□□□□ -0.94
CSDE1-204ENST00000369530 INTS5Q6P9B9 1019 aaKnown RBP9.15□□□□□ -0.94
CSDE1-204ENST00000369530 DEFB132Q7Z7B7 95 aa9.15□□□□□ -0.94
CSDE1-204ENST00000369530 FOCADQ5VW36 1801 aa9.15□□□□□ -0.94
CSDE1-204ENST00000369530 MEX3CQ5U5Q3 659 aaKnown RBP9.15□□□□□ -0.95
CSDE1-204ENST00000369530 RC3H1Q5TC82 1133 aaKnown RBP9.14□□□□□ -0.95
CSDE1-204ENST00000369530 GLIPR1L2Q4G1C9 344 aa9.14□□□□□ -0.95
CSDE1-204ENST00000369530 ZNF609O15014 1411 aa9.14□□□□□ -0.95
CSDE1-204ENST00000369530 DDB1Q16531 1140 aa9.13□□□□□ -0.95
CSDE1-204ENST00000369530 LINC00116Q8NCU8 138 aa9.13□□□□□ -0.95
CSDE1-204ENST00000369530 IL17REQ8NFR9 667 aa9.13□□□□□ -0.95
CSDE1-204ENST00000369530 PHACTR3Q96KR7 559 aa9.13□□□□□ -0.95
CSDE1-204ENST00000369530 CNGB1Q14028 1251 aaPredicted RBP9.13□□□□□ -0.95
CSDE1-204ENST00000369530 POLR3GLQ9BT43 218 aa9.13□□□□□ -0.95
CSDE1-204ENST00000369530 PALLDQ8WX93 1383 aa9.13□□□□□ -0.95
CSDE1-204ENST00000369530 FAM182BQ5T319 152 aa9.13□□□□□ -0.95
CSDE1-204ENST00000369530 ZCRB1Q8TBF4 217 aaKnown RBP9.13□□□□□ -0.95
CSDE1-204ENST00000369530 ATP10DQ9P241 1426 aa9.12□□□□□ -0.95
CSDE1-204ENST00000369530 CCER2I3L3R5 266 aa9.12□□□□□ -0.95
CSDE1-204ENST00000369530 HTATSF1O43719 755 aaKnown RBP9.12□□□□□ -0.95
CSDE1-204ENST00000369530 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.12□□□□□ -0.95
CSDE1-204ENST00000369530 TRIM35Q9UPQ4 493 aa9.12□□□□□ -0.95
CSDE1-204ENST00000369530 SCN4AP35499 1836 aa9.12□□□□□ -0.95
CSDE1-204ENST00000369530 KLRG2A4D1S0 409 aaPredicted RBP9.12□□□□□ -0.95
CSDE1-204ENST00000369530 PAK3O75914 559 aaPredicted RBP9.12□□□□□ -0.95
CSDE1-204ENST00000369530 DDX10Q13206 875 aaKnown RBP9.12□□□□□ -0.95
CSDE1-204ENST00000369530 MTHFSDQ2M296 383 aaKnown RBP9.12□□□□□ -0.95
CSDE1-204ENST00000369530 VSIG10Q8N0Z9 540 aa9.12□□□□□ -0.95
CSDE1-204ENST00000369530 BCL2L12Q9HB09 334 aa9.12□□□□□ -0.95
CSDE1-204ENST00000369530 KCNA3P22001 575 aa9.12□□□□□ -0.95
CSDE1-204ENST00000369530 MTHFSP49914 203 aa9.11□□□□□ -0.95
CSDE1-204ENST00000369530 TRMT2AQ8IZ69 625 aaKnown RBP9.11□□□□□ -0.95
CSDE1-204ENST00000369530 EN1Q05925 392 aaPredicted RBP9.11□□□□□ -0.95
CSDE1-204ENST00000369530 PDIA6Q15084 440 aa9.11□□□□□ -0.95
CSDE1-204ENST00000369530 AKAP4Q5JQC9 854 aa9.11□□□□□ -0.95
CSDE1-204ENST00000369530 TXNRD1Q16881 649 aa9.11□□□□□ -0.95
CSDE1-204ENST00000369530 CDK5RAP2Q96SN8 1893 aa9.1□□□□□ -0.95
CSDE1-204ENST00000369530 TRIM37O94972 964 aa9.1□□□□□ -0.95
CSDE1-204ENST00000369530 ZMYND15Q9H091 742 aa9.1□□□□□ -0.95
CSDE1-204ENST00000369530 DDX60LQ5H9U9 1706 aaKnown RBP9.1□□□□□ -0.95
CSDE1-204ENST00000369530 PRKRIP1Q9H875 184 aaPredicted RBP9.1□□□□□ -0.95
CSDE1-204ENST00000369530 SOS1Q07889 1333 aaPredicted RBP9.1□□□□□ -0.95
CSDE1-204ENST00000369530 SLC15A2Q16348 729 aa9.1□□□□□ -0.95
CSDE1-204ENST00000369530 DOCK2Q92608 1830 aa9.09□□□□□ -0.95
CSDE1-204ENST00000369530 TM4SF1P30408 202 aa9.09□□□□□ -0.95
CSDE1-204ENST00000369530 DCAF5Q96JK2 942 aa9.09□□□□□ -0.95
CSDE1-204ENST00000369530 SLC52A2Q9HAB3 445 aa9.09□□□□□ -0.95
CSDE1-204ENST00000369530 BABAM1Q9NWV8 329 aa9.09□□□□□ -0.95
CSDE1-204ENST00000369530 RNMTO43148 476 aaKnown RBP9.09□□□□□ -0.96
CSDE1-204ENST00000369530 CCDC27Q2M243 656 aa9.09□□□□□ -0.96
CSDE1-204ENST00000369530 USHBP1Q8N6Y0 703 aa9.09□□□□□ -0.96
CSDE1-204ENST00000369530 AMOTQ4VCS5 1084 aa9.08□□□□□ -0.96
CSDE1-204ENST00000369530 CCDC184Q52MB2 194 aa9.08□□□□□ -0.96
CSDE1-204ENST00000369530 TOM1L2Q6ZVM7 507 aa9.08□□□□□ -0.96
CSDE1-204ENST00000369530 MYBBP1AQ9BQG0 1328 aaKnown RBP9.07□□□□□ -0.96
CSDE1-204ENST00000369530 FCHSD2O94868 740 aa9.07□□□□□ -0.96
CSDE1-204ENST00000369530 FAM43AQ8N2R8 423 aa9.07□□□□□ -0.96
CSDE1-204ENST00000369530 EXOC5O00471 708 aa9.07□□□□□ -0.96
CSDE1-204ENST00000369530 CYP19A1P11511 503 aaPredicted RBP9.07□□□□□ -0.96
CSDE1-204ENST00000369530 RALBP1Q15311 655 aa9.07□□□□□ -0.96
CSDE1-204ENST00000369530 LGR6Q9HBX8 967 aa9.07□□□□□ -0.96
CSDE1-204ENST00000369530 STRN4Q9NRL3 753 aa9.07□□□□□ -0.96
CSDE1-204ENST00000369530 SCN9AQ15858 1988 aa9.06□□□□□ -0.96
CSDE1-204ENST00000369530 TMC1Q8TDI8 760 aa9.06□□□□□ -0.96
CSDE1-204ENST00000369530 FGD1P98174 961 aa9.05□□□□□ -0.96
CSDE1-204ENST00000369530 PNISRQ8TF01 805 aaKnown RBP9.05□□□□□ -0.96
CSDE1-204ENST00000369530 IPO9Q96P70 1041 aaKnown RBP9.04□□□□□ -0.96
CSDE1-204ENST00000369530 COL23A1Q86Y22 540 aaPredicted RBP9.04□□□□□ -0.96
CSDE1-204ENST00000369530 IFNL2Q8IZJ0 200 aa9.04□□□□□ -0.96
CSDE1-204ENST00000369530 ASAP1Q9ULH1 1129 aa9.04□□□□□ -0.96
CSDE1-204ENST00000369530 PRIM1P49642 420 aaKnown RBP9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 177 ms