RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 CCDC146Q8IYE0 955 aa20.01■□□□□ 0.79
SMPDL3A-201ENST00000368440 SLC52A2Q9HAB3 445 aa20.01■□□□□ 0.79
SMPDL3A-201ENST00000368440 R3HDM1Q15032 1099 aaKnown RBP20■□□□□ 0.79
SMPDL3A-201ENST00000368440 CCNL1Q9UK58 526 aaPredicted RBP20■□□□□ 0.79
SMPDL3A-201ENST00000368440 MAPK8IP3Q9UPT6 1336 aa20■□□□□ 0.79
SMPDL3A-201ENST00000368440 TUBGCP6Q96RT7 1819 aa20■□□□□ 0.79
SMPDL3A-201ENST00000368440 NEFMP07197 916 aa19.99■□□□□ 0.79
SMPDL3A-201ENST00000368440 SMARCC1Q92922 1105 aaPredicted RBP19.99■□□□□ 0.79
SMPDL3A-201ENST00000368440 PNNQ9H307 717 aaKnown RBP19.99■□□□□ 0.79
SMPDL3A-201ENST00000368440 CEMIPQ8WUJ3 1361 aa19.99■□□□□ 0.79
SMPDL3A-201ENST00000368440 DCTN1Q14203 1278 aa19.99■□□□□ 0.79
SMPDL3A-201ENST00000368440 SLC27A3Q5K4L6 730 aa19.99■□□□□ 0.79
SMPDL3A-201ENST00000368440 MRS2Q9HD23 443 aa19.99■□□□□ 0.79
SMPDL3A-201ENST00000368440 NFE2L2Q16236 605 aa19.98■□□□□ 0.79
SMPDL3A-201ENST00000368440 MCM10Q7L590 875 aa19.98■□□□□ 0.79
SMPDL3A-201ENST00000368440 UBR2Q8IWV8 1755 aa19.97■□□□□ 0.79
SMPDL3A-201ENST00000368440 NBPF14Q5TI25 921 aa19.97■□□□□ 0.79
SMPDL3A-201ENST00000368440 ZNF827Q17R98 1081 aa19.96■□□□□ 0.79
SMPDL3A-201ENST00000368440 ZNF831Q5JPB2 1677 aa19.96■□□□□ 0.79
SMPDL3A-201ENST00000368440 LOC102724428A0A0B4J2F2 783 aa19.96■□□□□ 0.79
SMPDL3A-201ENST00000368440 SIK1P57059 783 aa19.96■□□□□ 0.79
SMPDL3A-201ENST00000368440 C4BP0C0L5 1744 aa19.95■□□□□ 0.78
SMPDL3A-201ENST00000368440 TJP1Q07157 1748 aa19.95■□□□□ 0.78
SMPDL3A-201ENST00000368440 SLC39A6Q13433 755 aa19.95■□□□□ 0.78
SMPDL3A-201ENST00000368440 RUNDC1Q96C34 613 aa19.95■□□□□ 0.78
SMPDL3A-201ENST00000368440 SLC4A9Q96Q91 983 aa19.95■□□□□ 0.78
SMPDL3A-201ENST00000368440 KCPQ6ZWJ8 1503 aa19.95■□□□□ 0.78
SMPDL3A-201ENST00000368440 COL5A3P25940 1745 aaPredicted RBP19.95■□□□□ 0.78
SMPDL3A-201ENST00000368440 TEFQ10587 303 aa19.94■□□□□ 0.78
SMPDL3A-201ENST00000368440 PNISRQ8TF01 805 aaKnown RBP19.94■□□□□ 0.78
SMPDL3A-201ENST00000368440 RTF1Q92541 710 aaKnown RBP19.94■□□□□ 0.78
SMPDL3A-201ENST00000368440 CASZ1Q86V15 1759 aa19.94■□□□□ 0.78
SMPDL3A-201ENST00000368440 SLC15A2Q16348 729 aa19.94■□□□□ 0.78
SMPDL3A-201ENST00000368440 STK32BQ9NY57 414 aa19.94■□□□□ 0.78
SMPDL3A-201ENST00000368440 RRP7AQ9Y3A4 280 aaKnown RBP19.94■□□□□ 0.78
SMPDL3A-201ENST00000368440 QSER1Q2KHR3 1735 aa19.93■□□□□ 0.78
SMPDL3A-201ENST00000368440 CICQ96RK0 1608 aaPredicted RBP19.93■□□□□ 0.78
SMPDL3A-201ENST00000368440 HTATSF1O43719 755 aaKnown RBP19.93■□□□□ 0.78
SMPDL3A-201ENST00000368440 TMPOP42166 694 aaKnown RBP19.93■□□□□ 0.78
SMPDL3A-201ENST00000368440 ITPK1Q13572 414 aa19.93■□□□□ 0.78
SMPDL3A-201ENST00000368440 RBM42Q9BTD8 480 aaKnown RBP19.93■□□□□ 0.78
SMPDL3A-201ENST00000368440 PTCD1O75127 700 aaKnown RBP19.92■□□□□ 0.78
SMPDL3A-201ENST00000368440 AKT1S1Q96B36 256 aa19.92■□□□□ 0.78
SMPDL3A-201ENST00000368440 THUMPD2Q9BTF0 503 aaKnown RBP19.92■□□□□ 0.78
SMPDL3A-201ENST00000368440 ATP6V1AP38606 617 aa19.91■□□□□ 0.78
SMPDL3A-201ENST00000368440 RIPK4P57078 832 aa19.91■□□□□ 0.78
SMPDL3A-201ENST00000368440 LINC00116Q8NCU8 138 aa19.91■□□□□ 0.78
SMPDL3A-201ENST00000368440 NEUROD2Q15784 382 aa19.9■□□□□ 0.78
SMPDL3A-201ENST00000368440 PDGFDQ9GZP0 370 aaPredicted RBP19.9■□□□□ 0.78
SMPDL3A-201ENST00000368440 UBR3Q6ZT12 1888 aa19.9■□□□□ 0.78
SMPDL3A-201ENST00000368440 KDM3BQ7LBC6 1761 aa19.89■□□□□ 0.78
SMPDL3A-201ENST00000368440 KCNQ3O43525 872 aa19.88■□□□□ 0.77
SMPDL3A-201ENST00000368440 APAF1O14727 1248 aa19.88■□□□□ 0.77
SMPDL3A-201ENST00000368440 BTBD11A6QL63 1104 aa19.87■□□□□ 0.77
SMPDL3A-201ENST00000368440 ZNF790Q6PG37 636 aa19.87■□□□□ 0.77
SMPDL3A-201ENST00000368440 MYH14Q7Z406 1995 aaKnown RBP19.86■□□□□ 0.77
SMPDL3A-201ENST00000368440 SENP3-EIF4A1A0A087X0R7 540 aa19.86■□□□□ 0.77
SMPDL3A-201ENST00000368440 TRIM35Q9UPQ4 493 aa19.86■□□□□ 0.77
SMPDL3A-201ENST00000368440 AMIGO3Q86WK7 504 aa19.86■□□□□ 0.77
SMPDL3A-201ENST00000368440 TTC5Q8N0Z6 440 aa19.86■□□□□ 0.77
SMPDL3A-201ENST00000368440 TFCP2L1Q9NZI6 479 aa19.86■□□□□ 0.77
SMPDL3A-201ENST00000368440 PNPLA7Q6ZV29 1317 aa19.85■□□□□ 0.77
SMPDL3A-201ENST00000368440 SMIM5Q71RC9 77 aa19.85■□□□□ 0.77
SMPDL3A-201ENST00000368440 ZNF496Q96IT1 587 aaPredicted RBP19.85■□□□□ 0.77
SMPDL3A-201ENST00000368440 MIS18AQ9NYP9 233 aa19.85■□□□□ 0.77
SMPDL3A-201ENST00000368440 TAF7Q15545 349 aaPredicted RBP19.84■□□□□ 0.77
SMPDL3A-201ENST00000368440 FAM9BQ8IZU0 186 aa19.84■□□□□ 0.77
SMPDL3A-201ENST00000368440 DNAJC10Q8IXB1 793 aa19.84■□□□□ 0.77
SMPDL3A-201ENST00000368440 LMOD3Q0VAK6 560 aa19.83■□□□□ 0.76
SMPDL3A-201ENST00000368440 AK7Q96M32 723 aa19.83■□□□□ 0.76
SMPDL3A-201ENST00000368440 HEG1Q9ULI3 1381 aa19.82■□□□□ 0.76
SMPDL3A-201ENST00000368440 MIER1Q8N108 512 aa19.82■□□□□ 0.76
SMPDL3A-201ENST00000368440 LRP5O75197 1615 aa19.82■□□□□ 0.76
SMPDL3A-201ENST00000368440 CNTNAP4Q9C0A0 1308 aa19.81■□□□□ 0.76
SMPDL3A-201ENST00000368440 GNPATO15228 680 aa19.8■□□□□ 0.76
SMPDL3A-201ENST00000368440 FMNL2Q96PY5 1086 aa19.8■□□□□ 0.76
SMPDL3A-201ENST00000368440 C4AP0C0L4 1744 aa19.8■□□□□ 0.76
SMPDL3A-201ENST00000368440 PHF14O94880 888 aa19.79■□□□□ 0.76
SMPDL3A-201ENST00000368440 ZBTB7AO95365 584 aa19.79■□□□□ 0.76
SMPDL3A-201ENST00000368440 CRKLP46109 303 aaKnown RBP19.79■□□□□ 0.76
SMPDL3A-201ENST00000368440 COL23A1Q86Y22 540 aaPredicted RBP19.79■□□□□ 0.76
SMPDL3A-201ENST00000368440 VSIG10Q8N0Z9 540 aa19.79■□□□□ 0.76
SMPDL3A-201ENST00000368440 LAMB4A4D0S4 1761 aa19.79■□□□□ 0.76
SMPDL3A-201ENST00000368440 PRAMEF22A3QJZ6 481 aa19.78■□□□□ 0.76
SMPDL3A-201ENST00000368440 CCER2I3L3R5 266 aa19.78■□□□□ 0.76
SMPDL3A-201ENST00000368440 CYP19A1P11511 503 aaPredicted RBP19.78■□□□□ 0.76
SMPDL3A-201ENST00000368440 HMGB2P26583 209 aaKnown RBP19.78■□□□□ 0.76
SMPDL3A-201ENST00000368440 RC3H1Q5TC82 1133 aaKnown RBP19.78■□□□□ 0.76
SMPDL3A-201ENST00000368440 SRCAPQ6ZRS2 3230 aa19.78■□□□□ 0.76
SMPDL3A-201ENST00000368440 COL24A1Q17RW2 1714 aa19.77■□□□□ 0.76
SMPDL3A-201ENST00000368440 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.77■□□□□ 0.76
SMPDL3A-201ENST00000368440 INTS5Q6P9B9 1019 aaKnown RBP19.77■□□□□ 0.76
SMPDL3A-201ENST00000368440 MSH5O43196 834 aa19.76■□□□□ 0.75
SMPDL3A-201ENST00000368440 TSPYL4Q9UJ04 414 aa19.76■□□□□ 0.75
SMPDL3A-201ENST00000368440 SSFA2P28290 1259 aa19.75■□□□□ 0.75
SMPDL3A-201ENST00000368440 CCDC87Q9NVE4 849 aa19.75■□□□□ 0.75
SMPDL3A-201ENST00000368440 ATF5Q9Y2D1 282 aaPredicted RBP19.75■□□□□ 0.75
SMPDL3A-201ENST00000368440 EIF4A1P60842 406 aaKnown RBP19.75■□□□□ 0.75
SMPDL3A-201ENST00000368440 ZBTB1Q9Y2K1 713 aa19.75■□□□□ 0.75
SMPDL3A-201ENST00000368440 RTCBQ9Y3I0 505 aaKnown RBP19.75■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms