RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 LINC00116Q8NCU8 138 aa12.2□□□□□ -0.46
HMGB1P39-201ENST00000366304 RBM46Q8TBY0 533 aaKnown RBP12.2□□□□□ -0.46
HMGB1P39-201ENST00000366304 A0A1W2PP64 1363 aa12.19□□□□□ -0.46
HMGB1P39-201ENST00000366304 UBR3Q6ZT12 1888 aa12.19□□□□□ -0.46
HMGB1P39-201ENST00000366304 A0A0G2JLW4 131 aa12.19□□□□□ -0.46
HMGB1P39-201ENST00000366304 MPRIPQ6WCQ1 1025 aa12.19□□□□□ -0.46
HMGB1P39-201ENST00000366304 TMC1Q8TDI8 760 aa12.18□□□□□ -0.46
HMGB1P39-201ENST00000366304 AK7Q96M32 723 aa12.18□□□□□ -0.46
HMGB1P39-201ENST00000366304 CYP27B1O15528 508 aa12.17□□□□□ -0.46
HMGB1P39-201ENST00000366304 MMP10P09238 476 aa12.17□□□□□ -0.46
HMGB1P39-201ENST00000366304 ITPK1Q13572 414 aa12.17□□□□□ -0.46
HMGB1P39-201ENST00000366304 ARHGAP27Q6ZUM4 889 aa12.17□□□□□ -0.46
HMGB1P39-201ENST00000366304 BCS1LQ9Y276 419 aa12.17□□□□□ -0.46
HMGB1P39-201ENST00000366304 N4BP2Q86UW6 1770 aaPredicted RBP12.17□□□□□ -0.46
HMGB1P39-201ENST00000366304 ROCK2O75116 1388 aaKnown RBP12.17□□□□□ -0.46
HMGB1P39-201ENST00000366304 EVX2Q03828 476 aa12.16□□□□□ -0.46
HMGB1P39-201ENST00000366304 PIGBQ92521 554 aa12.16□□□□□ -0.46
HMGB1P39-201ENST00000366304 KCPQ6ZWJ8 1503 aa12.16□□□□□ -0.46
HMGB1P39-201ENST00000366304 MAP2P11137 1827 aaKnown RBP12.16□□□□□ -0.46
HMGB1P39-201ENST00000366304 C10orf71Q711Q0 1435 aa12.15□□□□□ -0.46
HMGB1P39-201ENST00000366304 DPEP1P16444 411 aa12.15□□□□□ -0.46
HMGB1P39-201ENST00000366304 KCNA3P22001 575 aa12.15□□□□□ -0.46
HMGB1P39-201ENST00000366304 SSFA2P28290 1259 aa12.15□□□□□ -0.46
HMGB1P39-201ENST00000366304 RRS1Q15050 365 aaKnown RBP12.15□□□□□ -0.46
HMGB1P39-201ENST00000366304 C9orf131Q5VYM1 1079 aa12.15□□□□□ -0.46
HMGB1P39-201ENST00000366304 HDGFL2Q7Z4V5 671 aaPredicted RBP12.15□□□□□ -0.46
HMGB1P39-201ENST00000366304 KIF13BQ9NQT8 1826 aa12.15□□□□□ -0.46
HMGB1P39-201ENST00000366304 NSD3Q9BZ95 1437 aa12.14□□□□□ -0.47
HMGB1P39-201ENST00000366304 C19orf67A6NJJ6 358 aa12.14□□□□□ -0.47
HMGB1P39-201ENST00000366304 AMPHP49418 695 aa12.14□□□□□ -0.47
HMGB1P39-201ENST00000366304 FSTL1Q12841 308 aa12.14□□□□□ -0.47
HMGB1P39-201ENST00000366304 MIER1Q8N108 512 aa12.14□□□□□ -0.47
HMGB1P39-201ENST00000366304 GNPATO15228 680 aa12.13□□□□□ -0.47
HMGB1P39-201ENST00000366304 HSPA1AP0DMV8 641 aaKnown RBP12.13□□□□□ -0.47
HMGB1P39-201ENST00000366304 HSPA1BP0DMV9 641 aaKnown RBP12.13□□□□□ -0.47
HMGB1P39-201ENST00000366304 SIN3AQ96ST3 1273 aa12.13□□□□□ -0.47
HMGB1P39-201ENST00000366304 RRAGCQ9HB90 399 aa12.13□□□□□ -0.47
HMGB1P39-201ENST00000366304 PCDH11XQ9BZA7 1347 aa12.12□□□□□ -0.47
HMGB1P39-201ENST00000366304 PCDH11YQ9BZA8 1340 aa12.12□□□□□ -0.47
HMGB1P39-201ENST00000366304 LOC102724428A0A0B4J2F2 783 aa12.12□□□□□ -0.47
HMGB1P39-201ENST00000366304 FCHSD2O94868 740 aa12.12□□□□□ -0.47
HMGB1P39-201ENST00000366304 SLC34A2O95436 690 aa12.12□□□□□ -0.47
HMGB1P39-201ENST00000366304 SIK1P57059 783 aa12.12□□□□□ -0.47
HMGB1P39-201ENST00000366304 TGFB2P61812 414 aa12.12□□□□□ -0.47
HMGB1P39-201ENST00000366304 RAPGEF4Q8WZA2 1011 aa12.12□□□□□ -0.47
HMGB1P39-201ENST00000366304 ASAP1Q9ULH1 1129 aa12.12□□□□□ -0.47
HMGB1P39-201ENST00000366304 CGNL1Q0VF96 1302 aa12.11□□□□□ -0.47
HMGB1P39-201ENST00000366304 ITGB4P16144 1822 aa12.11□□□□□ -0.47
HMGB1P39-201ENST00000366304 TATP17735 454 aaPredicted RBP12.11□□□□□ -0.47
HMGB1P39-201ENST00000366304 MNX1P50219 401 aaPredicted RBP12.11□□□□□ -0.47
HMGB1P39-201ENST00000366304 SP7Q8TDD2 431 aaPredicted RBP12.11□□□□□ -0.47
HMGB1P39-201ENST00000366304 SMARCC1Q92922 1105 aaPredicted RBP12.11□□□□□ -0.47
HMGB1P39-201ENST00000366304 SLC4A9Q96Q91 983 aa12.11□□□□□ -0.47
HMGB1P39-201ENST00000366304 TERF2IPQ9NYB0 399 aa12.11□□□□□ -0.47
HMGB1P39-201ENST00000366304 FBXO3Q9UK99 471 aa12.11□□□□□ -0.47
HMGB1P39-201ENST00000366304 RTL1A6NKG5 1358 aa12.1□□□□□ -0.47
HMGB1P39-201ENST00000366304 HSP90AB2PQ58FF8 381 aa12.1□□□□□ -0.47
HMGB1P39-201ENST00000366304 C16orf71Q8IYS4 520 aaPredicted RBP12.1□□□□□ -0.47
HMGB1P39-201ENST00000366304 PLCD3Q8N3E9 789 aa12.1□□□□□ -0.47
HMGB1P39-201ENST00000366304 COG3Q96JB2 828 aa12.1□□□□□ -0.47
HMGB1P39-201ENST00000366304 BRCA1P38398 1863 aaKnown RBP12.1□□□□□ -0.47
HMGB1P39-201ENST00000366304 PKD1L3Q7Z443 1732 aa12.09□□□□□ -0.47
HMGB1P39-201ENST00000366304 DCAF5Q96JK2 942 aa12.09□□□□□ -0.47
HMGB1P39-201ENST00000366304 RNF181Q9P0P0 153 aa12.09□□□□□ -0.47
HMGB1P39-201ENST00000366304 PLEKHG2Q9H7P9 1386 aa12.08□□□□□ -0.48
HMGB1P39-201ENST00000366304 GYS1P13807 737 aa12.08□□□□□ -0.48
HMGB1P39-201ENST00000366304 CD44P16070 742 aaKnown RBP12.08□□□□□ -0.48
HMGB1P39-201ENST00000366304 NKX1-1Q15270 411 aaPredicted RBP12.08□□□□□ -0.48
HMGB1P39-201ENST00000366304 KDRP35968 1356 aa12.07□□□□□ -0.48
HMGB1P39-201ENST00000366304 C4AP0C0L4 1744 aa12.07□□□□□ -0.48
HMGB1P39-201ENST00000366304 ATP6V1AP38606 617 aa12.07□□□□□ -0.48
HMGB1P39-201ENST00000366304 SMC1BQ8NDV3 1235 aa12.07□□□□□ -0.48
HMGB1P39-201ENST00000366304 ARHGEF1Q92888 912 aaKnown RBP12.07□□□□□ -0.48
HMGB1P39-201ENST00000366304 ATG3Q9NT62 314 aa12.07□□□□□ -0.48
HMGB1P39-201ENST00000366304 INSRP06213 1382 aa12.06□□□□□ -0.48
HMGB1P39-201ENST00000366304 FYB1O15117 783 aa12.06□□□□□ -0.48
HMGB1P39-201ENST00000366304 CHRNA5P30532 468 aa12.06□□□□□ -0.48
HMGB1P39-201ENST00000366304 TMF1P82094 1093 aa12.06□□□□□ -0.48
HMGB1P39-201ENST00000366304 GGNBP2Q9H3C7 697 aa12.06□□□□□ -0.48
HMGB1P39-201ENST00000366304 KDM2BQ8NHM5 1336 aa12.06□□□□□ -0.48
HMGB1P39-201ENST00000366304 NCAPD2Q15021 1401 aa12.05□□□□□ -0.48
HMGB1P39-201ENST00000366304 DDR1Q08345 913 aa12.05□□□□□ -0.48
HMGB1P39-201ENST00000366304 NLGN1Q8N2Q7 840 aa12.05□□□□□ -0.48
HMGB1P39-201ENST00000366304 CCDC87Q9NVE4 849 aa12.05□□□□□ -0.48
HMGB1P39-201ENST00000366304 TNRC6CQ9HCJ0 1690 aaKnown RBP12.04□□□□□ -0.48
HMGB1P39-201ENST00000366304 HMGB2P26583 209 aaKnown RBP12.04□□□□□ -0.48
HMGB1P39-201ENST00000366304 RASSF7Q02833 373 aa12.04□□□□□ -0.48
HMGB1P39-201ENST00000366304 NEUROD1Q13562 356 aa12.04□□□□□ -0.48
HMGB1P39-201ENST00000366304 TRAPPC3LQ5T215 181 aa12.04□□□□□ -0.48
HMGB1P39-201ENST00000366304 TESK2Q96S53 571 aa12.04□□□□□ -0.48
HMGB1P39-201ENST00000366304 CARD11Q9BXL7 1154 aa12.04□□□□□ -0.48
HMGB1P39-201ENST00000366304 PIM2Q9P1W9 311 aa12.04□□□□□ -0.48
HMGB1P39-201ENST00000366304 ARFGEF1Q9Y6D6 1849 aa12.04□□□□□ -0.48
HMGB1P39-201ENST00000366304 KDM6AO15550 1401 aaPredicted RBP12.03□□□□□ -0.48
HMGB1P39-201ENST00000366304 SMG6Q86US8 1419 aaKnown RBP12.03□□□□□ -0.48
HMGB1P39-201ENST00000366304 POTECB2RU33 542 aa12.03□□□□□ -0.48
HMGB1P39-201ENST00000366304 DALRD3Q5D0E6 543 aaKnown RBP12.03□□□□□ -0.48
HMGB1P39-201ENST00000366304 PUS7Q96PZ0 661 aaKnown RBP12.03□□□□□ -0.48
HMGB1P39-201ENST00000366304 TMOD3Q9NYL9 352 aa12.03□□□□□ -0.48
HMGB1P39-201ENST00000366304 SRP68Q9UHB9 627 aaKnown RBP12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms