RNA–Protein interactions for RNA: ENST00000366170.6

VSTM1-202, Transcript of V-set and transmembrane domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene VSTM1, Length 654 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSTM1-202ENST00000366170 SHANK3Q9BYB0 1731 aa16.84■□□□□ 0.29
VSTM1-202ENST00000366170 SCN11AQ9UI33 1791 aa16.84■□□□□ 0.29
VSTM1-202ENST00000366170 DUSP27Q5VZP5 1158 aa16.84■□□□□ 0.29
VSTM1-202ENST00000366170 TSR2Q969E8 191 aaKnown RBP16.84■□□□□ 0.29
VSTM1-202ENST00000366170 KDM6AO15550 1401 aaPredicted RBP16.84■□□□□ 0.29
VSTM1-202ENST00000366170 LRRC37A3O60309 1634 aa16.83■□□□□ 0.28
VSTM1-202ENST00000366170 KRT27Q7Z3Y8 459 aa16.83■□□□□ 0.28
VSTM1-202ENST00000366170 SYTL4Q96C24 671 aaPredicted RBP16.83■□□□□ 0.28
VSTM1-202ENST00000366170 MBIPQ9NS73 344 aa16.83■□□□□ 0.28
VSTM1-202ENST00000366170 TMOD3Q9NYL9 352 aa16.83■□□□□ 0.28
VSTM1-202ENST00000366170 THSD7AQ9UPZ6 1657 aa16.82■□□□□ 0.28
VSTM1-202ENST00000366170 PRIM1P49642 420 aaKnown RBP16.82■□□□□ 0.28
VSTM1-202ENST00000366170 ACSBG1Q96GR2 724 aa16.82■□□□□ 0.28
VSTM1-202ENST00000366170 FANCIQ9NVI1 1328 aa16.81■□□□□ 0.28
VSTM1-202ENST00000366170 EXOSC9Q06265 439 aaKnown RBP16.81■□□□□ 0.28
VSTM1-202ENST00000366170 FAM182BQ5T319 152 aa16.81■□□□□ 0.28
VSTM1-202ENST00000366170 SLC39A6Q13433 755 aa16.79■□□□□ 0.28
VSTM1-202ENST00000366170 TTC5Q8N0Z6 440 aa16.79■□□□□ 0.28
VSTM1-202ENST00000366170 PIGBQ92521 554 aa16.79■□□□□ 0.28
VSTM1-202ENST00000366170 ADAMTS7Q9UKP4 1686 aa16.78■□□□□ 0.28
VSTM1-202ENST00000366170 KCNQ3O43525 872 aa16.78■□□□□ 0.28
VSTM1-202ENST00000366170 FAM196AQ6ZSG2 479 aa16.78■□□□□ 0.28
VSTM1-202ENST00000366170 ELL2O00472 640 aaPredicted RBP16.77■□□□□ 0.28
VSTM1-202ENST00000366170 ZNF790Q6PG37 636 aa16.77■□□□□ 0.28
VSTM1-202ENST00000366170 BRWD3Q6RI45 1802 aa16.77■□□□□ 0.27
VSTM1-202ENST00000366170 ITGB4P16144 1822 aa16.76■□□□□ 0.27
VSTM1-202ENST00000366170 KCNQ2O43526 872 aa16.76■□□□□ 0.27
VSTM1-202ENST00000366170 EIF4A1P60842 406 aaKnown RBP16.76■□□□□ 0.27
VSTM1-202ENST00000366170 C8orf58Q8NAV2 365 aa16.76■□□□□ 0.27
VSTM1-202ENST00000366170 TWISTNBQ3B726 338 aaPredicted RBP16.75■□□□□ 0.27
VSTM1-202ENST00000366170 CT47B1P0C2W7 299 aaPredicted RBP16.74■□□□□ 0.27
VSTM1-202ENST00000366170 FMNL2Q96PY5 1086 aa16.74■□□□□ 0.27
VSTM1-202ENST00000366170 ATG3Q9NT62 314 aa16.74■□□□□ 0.27
VSTM1-202ENST00000366170 ASAP1Q9ULH1 1129 aa16.74■□□□□ 0.27
VSTM1-202ENST00000366170 SIPA1L3O60292 1781 aaPredicted RBP16.74■□□□□ 0.27
VSTM1-202ENST00000366170 BCL9O00512 1426 aa16.73■□□□□ 0.27
VSTM1-202ENST00000366170 RGS12O14924 1447 aa16.73■□□□□ 0.27
VSTM1-202ENST00000366170 KRT24Q2M2I5 525 aa16.73■□□□□ 0.27
VSTM1-202ENST00000366170 TSPYL6Q8N831 410 aa16.73■□□□□ 0.27
VSTM1-202ENST00000366170 RCAN3Q9UKA8 241 aa16.73■□□□□ 0.27
VSTM1-202ENST00000366170 MRC1P22897 1456 aa16.73■□□□□ 0.27
VSTM1-202ENST00000366170 PTCD1O75127 700 aaKnown RBP16.72■□□□□ 0.27
VSTM1-202ENST00000366170 VAMP4O75379 141 aa16.72■□□□□ 0.27
VSTM1-202ENST00000366170 SMARCC1Q92922 1105 aaPredicted RBP16.72■□□□□ 0.27
VSTM1-202ENST00000366170 RBM42Q9BTD8 480 aaKnown RBP16.72■□□□□ 0.27
VSTM1-202ENST00000366170 CHMP4AQ9BY43 222 aa16.72■□□□□ 0.27
VSTM1-202ENST00000366170 DOT1LQ8TEK3 1739 aa16.72■□□□□ 0.27
VSTM1-202ENST00000366170 TOGARAM1Q9Y4F4 1720 aa16.72■□□□□ 0.27
VSTM1-202ENST00000366170 ZNF496Q96IT1 587 aaPredicted RBP16.71■□□□□ 0.27
VSTM1-202ENST00000366170 BCL11BQ9C0K0 894 aaPredicted RBP16.71■□□□□ 0.27
VSTM1-202ENST00000366170 KDM3BQ7LBC6 1761 aa16.7■□□□□ 0.26
VSTM1-202ENST00000366170 GIGYF1O75420 1035 aaPredicted RBP16.7■□□□□ 0.26
VSTM1-202ENST00000366170 TRIM37O94972 964 aa16.7■□□□□ 0.26
VSTM1-202ENST00000366170 SNRPA1P09661 255 aaKnown RBP16.7■□□□□ 0.26
VSTM1-202ENST00000366170 ZNF428Q96B54 188 aa16.7■□□□□ 0.26
VSTM1-202ENST00000366170 SOS1Q07889 1333 aaPredicted RBP16.7■□□□□ 0.26
VSTM1-202ENST00000366170 EIF2S2P20042 333 aaKnown RBP16.69■□□□□ 0.26
VSTM1-202ENST00000366170 PTF1AQ7RTS3 328 aa16.69■□□□□ 0.26
VSTM1-202ENST00000366170 UPF1Q92900 1129 aaKnown RBP eCLIP16.68■□□□□ 0.26
VSTM1-202ENST00000366170 TEX13AQ9BXU3 409 aaPredicted RBP16.68■□□□□ 0.26
VSTM1-202ENST00000366170 SBF2Q86WG5 1849 aa16.68■□□□□ 0.26
VSTM1-202ENST00000366170 TCERG1O14776 1098 aaKnown RBP16.67■□□□□ 0.26
VSTM1-202ENST00000366170 HOXB7P09629 217 aa16.67■□□□□ 0.26
VSTM1-202ENST00000366170 RARSP54136 660 aaKnown RBP16.67■□□□□ 0.26
VSTM1-202ENST00000366170 ALDH1L2Q3SY69 923 aa16.67■□□□□ 0.26
VSTM1-202ENST00000366170 CCDC30Q5VVM6 783 aa16.67■□□□□ 0.26
VSTM1-202ENST00000366170 NECTIN2Q92692 538 aa16.67■□□□□ 0.26
VSTM1-202ENST00000366170 HEG1Q9ULI3 1381 aa16.66■□□□□ 0.26
VSTM1-202ENST00000366170 HDGFL1Q5TGJ6 251 aa16.66■□□□□ 0.26
VSTM1-202ENST00000366170 VSIG10Q8N0Z9 540 aa16.66■□□□□ 0.26
VSTM1-202ENST00000366170 STK31Q9BXU1 1019 aa16.66■□□□□ 0.26
VSTM1-202ENST00000366170 SUPT16HQ9Y5B9 1047 aaKnown RBP16.66■□□□□ 0.26
VSTM1-202ENST00000366170 PRAMEF22A3QJZ6 481 aa16.65■□□□□ 0.26
VSTM1-202ENST00000366170 SSH1Q8WYL5 1049 aa16.65■□□□□ 0.26
VSTM1-202ENST00000366170 SMC4Q9NTJ3 1288 aa16.65■□□□□ 0.26
VSTM1-202ENST00000366170 USP16Q9Y5T5 823 aa16.65■□□□□ 0.26
VSTM1-202ENST00000366170 LOC102724428A0A0B4J2F2 783 aa16.64■□□□□ 0.25
VSTM1-202ENST00000366170 BCAR3O75815 825 aa16.64■□□□□ 0.25
VSTM1-202ENST00000366170 ATP6V1AP38606 617 aa16.64■□□□□ 0.25
VSTM1-202ENST00000366170 SIK1P57059 783 aa16.64■□□□□ 0.25
VSTM1-202ENST00000366170 BCL2L13Q9BXK5 485 aa16.64■□□□□ 0.25
VSTM1-202ENST00000366170 NHSQ6T4R5 1651 aa16.64■□□□□ 0.25
VSTM1-202ENST00000366170 PALLDQ8WX93 1383 aa16.64■□□□□ 0.25
VSTM1-202ENST00000366170 STARD3NLO95772 234 aa16.63■□□□□ 0.25
VSTM1-202ENST00000366170 APBA3O96018 575 aa16.63■□□□□ 0.25
VSTM1-202ENST00000366170 SLC4A2P04920 1241 aa16.63■□□□□ 0.25
VSTM1-202ENST00000366170 BTAF1O14981 1849 aa16.62■□□□□ 0.25
VSTM1-202ENST00000366170 DNAJC10Q8IXB1 793 aa16.62■□□□□ 0.25
VSTM1-202ENST00000366170 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.62■□□□□ 0.25
VSTM1-202ENST00000366170 SLC4A9Q96Q91 983 aa16.62■□□□□ 0.25
VSTM1-202ENST00000366170 DBF4Q9UBU7 674 aaPredicted RBP16.62■□□□□ 0.25
VSTM1-202ENST00000366170 KCPQ6ZWJ8 1503 aa16.61■□□□□ 0.25
VSTM1-202ENST00000366170 PAPPAQ13219 1627 aa16.61■□□□□ 0.25
VSTM1-202ENST00000366170 MRPL50Q8N5N7 158 aaKnown RBP16.61■□□□□ 0.25
VSTM1-202ENST00000366170 FRAT1Q92837 279 aaPredicted RBP16.61■□□□□ 0.25
VSTM1-202ENST00000366170 UBR2Q8IWV8 1755 aa16.61■□□□□ 0.25
VSTM1-202ENST00000366170 IPO8O15397 1037 aaKnown RBP16.6■□□□□ 0.25
VSTM1-202ENST00000366170 CANXP27824 592 aaKnown RBP16.6■□□□□ 0.25
VSTM1-202ENST00000366170 SF3B2Q13435 895 aaKnown RBP16.6■□□□□ 0.25
VSTM1-202ENST00000366170 A1BGP04217 495 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms