RNA–Protein interactions for RNA: ENST00000361866.7

COL6A1-201, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL6A1, Length 4,238 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-201ENST00000361866 LIMCH1Q9UPQ0 1083 aa16.52■□□□□ 0.24
COL6A1-201ENST00000361866 ADGRL1O94910 1474 aa16.52■□□□□ 0.24
COL6A1-201ENST00000361866 BCORL1Q5H9F3 1711 aa16.52■□□□□ 0.24
COL6A1-201ENST00000361866 PDILTQ8N807 584 aa16.52■□□□□ 0.23
COL6A1-201ENST00000361866 NECAB1Q8N987 351 aa16.52■□□□□ 0.23
COL6A1-201ENST00000361866 KIF1BPQ96EK5 621 aa16.52■□□□□ 0.23
COL6A1-201ENST00000361866 IGSF3O75054 1194 aa16.51■□□□□ 0.23
COL6A1-201ENST00000361866 CCDC8Q9H0W5 538 aaPredicted RBP16.51■□□□□ 0.23
COL6A1-201ENST00000361866 PPP4R3BQ5MIZ7 849 aa16.51■□□□□ 0.23
COL6A1-201ENST00000361866 CEP85Q6P2H3 762 aa16.51■□□□□ 0.23
COL6A1-201ENST00000361866 NSD2O96028 1365 aa16.51■□□□□ 0.23
COL6A1-201ENST00000361866 NCKAP5LQ9HCH0 1330 aa16.51■□□□□ 0.23
COL6A1-201ENST00000361866 MYL6BP14649 208 aa16.5■□□□□ 0.23
COL6A1-201ENST00000361866 ESYT1Q9BSJ8 1104 aa16.5■□□□□ 0.23
COL6A1-201ENST00000361866 NPC1L1Q9UHC9 1359 aa16.5■□□□□ 0.23
COL6A1-201ENST00000361866 GJB2P29033 226 aa16.5■□□□□ 0.23
COL6A1-201ENST00000361866 CPLX2Q6PUV4 134 aaKnown RBP16.5■□□□□ 0.23
COL6A1-201ENST00000361866 C17orf53Q8N3J3 647 aaPredicted RBP16.5■□□□□ 0.23
COL6A1-201ENST00000361866 NOLC1Q14978 699 aaKnown RBP eCLIP16.5■□□□□ 0.23
COL6A1-201ENST00000361866 ZNF530Q6P9A1 599 aaPredicted RBP16.5■□□□□ 0.23
COL6A1-201ENST00000361866 TRMT1Q9NXH9 659 aaKnown RBP16.5■□□□□ 0.23
COL6A1-201ENST00000361866 A0A1W2PP64 1363 aa16.49■□□□□ 0.23
COL6A1-201ENST00000361866 PPP1R42Q7Z4L9 355 aa16.49■□□□□ 0.23
COL6A1-201ENST00000361866 DYNC1I1O14576 645 aa16.49■□□□□ 0.23
COL6A1-201ENST00000361866 NLRP2Q9NX02 1062 aa16.49■□□□□ 0.23
COL6A1-201ENST00000361866 KIF21AQ7Z4S6 1674 aa16.49■□□□□ 0.23
COL6A1-201ENST00000361866 FSD2A1L4K1 749 aa16.49■□□□□ 0.23
COL6A1-201ENST00000361866 WASLO00401 505 aaPredicted RBP16.49■□□□□ 0.23
COL6A1-201ENST00000361866 STK38Q15208 465 aa16.49■□□□□ 0.23
COL6A1-201ENST00000361866 GLRX3O76003 335 aaKnown RBP16.48■□□□□ 0.23
COL6A1-201ENST00000361866 CPA1P15085 419 aa16.48■□□□□ 0.23
COL6A1-201ENST00000361866 GUCY1B3Q02153 619 aa16.48■□□□□ 0.23
COL6A1-201ENST00000361866 RALYLQ86SE5 291 aaKnown RBP16.48■□□□□ 0.23
COL6A1-201ENST00000361866 CCDC34Q96HJ3 373 aa16.48■□□□□ 0.23
COL6A1-201ENST00000361866 NAT10Q9H0A0 1025 aaKnown RBP16.48■□□□□ 0.23
COL6A1-201ENST00000361866 ERICH4A6NGS2 130 aa16.48■□□□□ 0.23
COL6A1-201ENST00000361866 FOXO3O43524 673 aa16.48■□□□□ 0.23
COL6A1-201ENST00000361866 TRDNQ13061 729 aa16.48■□□□□ 0.23
COL6A1-201ENST00000361866 TTLL5Q6EMB2 1281 aa16.48■□□□□ 0.23
COL6A1-201ENST00000361866 INSRP06213 1382 aa16.48■□□□□ 0.23
COL6A1-201ENST00000361866 GNAT3A8MTJ3 354 aa16.48■□□□□ 0.23
COL6A1-201ENST00000361866 TSC1Q92574 1164 aa16.48■□□□□ 0.23
COL6A1-201ENST00000361866 MCM5P33992 734 aa16.47■□□□□ 0.23
COL6A1-201ENST00000361866 TRIM29Q14134 588 aa16.47■□□□□ 0.23
COL6A1-201ENST00000361866 NFXL1Q6ZNB6 911 aa16.47■□□□□ 0.23
COL6A1-201ENST00000361866 ZSCAN31Q96LW9 406 aaPredicted RBP16.47■□□□□ 0.23
COL6A1-201ENST00000361866 PPP6R1Q9UPN7 881 aa16.47■□□□□ 0.23
COL6A1-201ENST00000361866 SHANK2Q9UPX8 1470 aa16.47■□□□□ 0.23
COL6A1-201ENST00000361866 PTPRCP08575 1304 aa16.47■□□□□ 0.23
COL6A1-201ENST00000361866 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.47■□□□□ 0.23
COL6A1-201ENST00000361866 DUOX2Q9NRD8 1548 aa16.47■□□□□ 0.23
COL6A1-201ENST00000361866 DNM1Q05193 864 aaKnown RBP16.46■□□□□ 0.23
COL6A1-201ENST00000361866 GOLGA6L1Q8N7Z2 621 aa16.46■□□□□ 0.23
COL6A1-201ENST00000361866 LMBRD1Q9NUN5 540 aa16.46■□□□□ 0.23
COL6A1-201ENST00000361866 TMEM63CQ9P1W3 806 aa16.46■□□□□ 0.23
COL6A1-201ENST00000361866 ADAMTS12P58397 1594 aa16.46■□□□□ 0.23
COL6A1-201ENST00000361866 TNNT1P13805 278 aa16.46■□□□□ 0.23
COL6A1-201ENST00000361866 FANCAO15360 1455 aa16.46■□□□□ 0.23
COL6A1-201ENST00000361866 PLCH2O75038 1416 aa16.46■□□□□ 0.23
COL6A1-201ENST00000361866 UBE2HP62256 183 aa16.46■□□□□ 0.22
COL6A1-201ENST00000361866 G2E3Q7L622 706 aa16.46■□□□□ 0.22
COL6A1-201ENST00000361866 ERC1Q8IUD2 1116 aa16.46■□□□□ 0.22
COL6A1-201ENST00000361866 GSPT1P15170 499 aaKnown RBP16.45■□□□□ 0.22
COL6A1-201ENST00000361866 RAPGEF4Q8WZA2 1011 aa16.45■□□□□ 0.22
COL6A1-201ENST00000361866 NOL7Q9UMY1 257 aaKnown RBP16.45■□□□□ 0.22
COL6A1-201ENST00000361866 HIP1O00291 1037 aa16.44■□□□□ 0.22
COL6A1-201ENST00000361866 ZSCAN22P10073 491 aaPredicted RBP16.44■□□□□ 0.22
COL6A1-201ENST00000361866 ANKRD1Q15327 319 aa16.44■□□□□ 0.22
COL6A1-201ENST00000361866 ARGLU1Q9NWB6 273 aaPredicted RBP16.44■□□□□ 0.22
COL6A1-201ENST00000361866 PI4KAP2A4QPH2 592 aa16.44■□□□□ 0.22
COL6A1-201ENST00000361866 TEX35Q5T0J7 233 aa16.44■□□□□ 0.22
COL6A1-201ENST00000361866 PI4KAP1Q8N8J0 262 aa16.44■□□□□ 0.22
COL6A1-201ENST00000361866 BTBD11A6QL63 1104 aa16.44■□□□□ 0.22
COL6A1-201ENST00000361866 ZNF165P49910 485 aa16.43■□□□□ 0.22
COL6A1-201ENST00000361866 CLIP2Q9UDT6 1046 aa16.43■□□□□ 0.22
COL6A1-201ENST00000361866 RHPN1Q8TCX5 695 aa16.43■□□□□ 0.22
COL6A1-201ENST00000361866 PTPRTO14522 1441 aa16.43■□□□□ 0.22
COL6A1-201ENST00000361866 CCDC186Q7Z3E2 898 aa16.43■□□□□ 0.22
COL6A1-201ENST00000361866 EIF2AK4Q9P2K8 1649 aaKnown RBP16.43■□□□□ 0.22
COL6A1-201ENST00000361866 WDR7Q9Y4E6 1490 aa16.43■□□□□ 0.22
COL6A1-201ENST00000361866 RBM33Q96EV2 1170 aaKnown RBP16.43■□□□□ 0.22
COL6A1-201ENST00000361866 SKIDA1Q1XH10 827 aa16.42■□□□□ 0.22
COL6A1-201ENST00000361866 GADD45BO75293 160 aaPredicted RBP16.42■□□□□ 0.22
COL6A1-201ENST00000361866 SERPINC1P01008 464 aa16.42■□□□□ 0.22
COL6A1-201ENST00000361866 MBD5Q9P267 1494 aa16.42■□□□□ 0.22
COL6A1-201ENST00000361866 AKAP17AQ02040 695 aaKnown RBP16.42■□□□□ 0.22
COL6A1-201ENST00000361866 PTPN14Q15678 1187 aa16.42■□□□□ 0.22
COL6A1-201ENST00000361866 THEMISQ8N1K5 641 aaPredicted RBP16.42■□□□□ 0.22
COL6A1-201ENST00000361866 CHMP4CQ96CF2 233 aa16.42■□□□□ 0.22
COL6A1-201ENST00000361866 EIF4A2Q14240 407 aaKnown RBP16.41■□□□□ 0.22
COL6A1-201ENST00000361866 PLEKHO1Q53GL0 409 aaPredicted RBP16.41■□□□□ 0.22
COL6A1-201ENST00000361866 ESCO1Q5FWF5 840 aa16.41■□□□□ 0.22
COL6A1-201ENST00000361866 FAM173BQ6P4H8 233 aa16.41■□□□□ 0.22
COL6A1-201ENST00000361866 SCAND2PQ9GZW5 306 aaPredicted RBP16.41■□□□□ 0.22
COL6A1-201ENST00000361866 MPRIPQ6WCQ1 1025 aa16.41■□□□□ 0.22
COL6A1-201ENST00000361866 DNAAF4Q8WXU2 420 aa16.41■□□□□ 0.22
COL6A1-201ENST00000361866 JARID2Q92833 1246 aaPredicted RBP16.41■□□□□ 0.22
COL6A1-201ENST00000361866 TRERF1Q96PN7 1200 aa16.41■□□□□ 0.22
COL6A1-201ENST00000361866 CCDC85AQ96PX6 553 aaPredicted RBP16.41■□□□□ 0.22
COL6A1-201ENST00000361866 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms