RNA–Protein interactions for RNA: ENST00000360495.9

CCDC144A-203, Transcript of coiled-coil domain containing 144A, humanhuman

TSL 1 (best)

Gene CCDC144A, Length 5,545 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144A-203ENST00000360495 ZSWIM4Q9H7M6 989 aa15.6■□□□□ 0.09
CCDC144A-203ENST00000360495 WASF1Q92558 559 aa15.6■□□□□ 0.09
CCDC144A-203ENST00000360495 CEP63Q96MT8 703 aa15.6■□□□□ 0.09
CCDC144A-203ENST00000360495 SH2B1Q9NRF2 756 aaPredicted RBP15.6■□□□□ 0.09
CCDC144A-203ENST00000360495 CTNNA3Q9UI47 895 aa15.6■□□□□ 0.09
CCDC144A-203ENST00000360495 USO1O60763 962 aaKnown RBP15.59■□□□□ 0.09
CCDC144A-203ENST00000360495 UBE4AQ14139 1066 aa15.59■□□□□ 0.09
CCDC144A-203ENST00000360495 HLTFQ14527 1009 aaKnown RBP eCLIP15.59■□□□□ 0.09
CCDC144A-203ENST00000360495 NUP88Q99567 741 aaPredicted RBP15.59■□□□□ 0.09
CCDC144A-203ENST00000360495 SRGAP3O43295 1099 aa15.59■□□□□ 0.09
CCDC144A-203ENST00000360495 FKBP15Q5T1M5 1219 aa15.59■□□□□ 0.09
CCDC144A-203ENST00000360495 SOGA3Q5TF21 947 aa15.59■□□□□ 0.09
CCDC144A-203ENST00000360495 LRSAM1Q6UWE0 723 aa15.59■□□□□ 0.09
CCDC144A-203ENST00000360495 HSPA4P34932 840 aa15.59■□□□□ 0.09
CCDC144A-203ENST00000360495 STX1AQ16623 288 aa15.59■□□□□ 0.09
CCDC144A-203ENST00000360495 GNG11P61952 73 aa15.58■□□□□ 0.09
CCDC144A-203ENST00000360495 MAATS1Q7Z4T9 603 aa15.58■□□□□ 0.09
CCDC144A-203ENST00000360495 YEATS4O95619 227 aa15.58■□□□□ 0.08
CCDC144A-203ENST00000360495 ZNF165P49910 485 aa15.58■□□□□ 0.08
CCDC144A-203ENST00000360495 PRPF40BQ6NWY9 871 aaKnown RBP15.58■□□□□ 0.08
CCDC144A-203ENST00000360495 LIG1P18858 919 aa15.58■□□□□ 0.08
CCDC144A-203ENST00000360495 NAA15Q9BXJ9 866 aaKnown RBP15.58■□□□□ 0.08
CCDC144A-203ENST00000360495 ARFGAP3Q9NP61 516 aa15.58■□□□□ 0.08
CCDC144A-203ENST00000360495 GSTTP1A0A1W2PQM5 241 aa15.58■□□□□ 0.08
CCDC144A-203ENST00000360495 SSR1P43307 286 aaKnown RBP15.58■□□□□ 0.08
CCDC144A-203ENST00000360495 CCDC12Q8WUD4 166 aaPredicted RBP15.58■□□□□ 0.08
CCDC144A-203ENST00000360495 ZKSCAN5Q9Y2L8 839 aa15.58■□□□□ 0.08
CCDC144A-203ENST00000360495 ATP2C2O75185 946 aa15.57■□□□□ 0.08
CCDC144A-203ENST00000360495 HCLS1P14317 486 aaPredicted RBP15.57■□□□□ 0.08
CCDC144A-203ENST00000360495 PSME1Q06323 249 aa15.57■□□□□ 0.08
CCDC144A-203ENST00000360495 CCDC150Q8NCX0 1101 aa15.57■□□□□ 0.08
CCDC144A-203ENST00000360495 CACNA2D4Q7Z3S7 1137 aa15.57■□□□□ 0.08
CCDC144A-203ENST00000360495 NUTM1Q86Y26 1132 aa15.57■□□□□ 0.08
CCDC144A-203ENST00000360495 MICALL1Q8N3F8 863 aa15.57■□□□□ 0.08
CCDC144A-203ENST00000360495 TTC31Q49AM3 519 aaPredicted RBP15.56■□□□□ 0.08
CCDC144A-203ENST00000360495 CNNM1Q9NRU3 951 aa15.56■□□□□ 0.08
CCDC144A-203ENST00000360495 MX1P20591 662 aa15.56■□□□□ 0.08
CCDC144A-203ENST00000360495 PLCD3Q8N3E9 789 aa15.56■□□□□ 0.08
CCDC144A-203ENST00000360495 FSIP1Q8NA03 581 aa15.56■□□□□ 0.08
CCDC144A-203ENST00000360495 EXOC6BQ9Y2D4 811 aa15.56■□□□□ 0.08
CCDC144A-203ENST00000360495 SMARCA4P51532 1647 aa15.56■□□□□ 0.08
CCDC144A-203ENST00000360495 IGSF3O75054 1194 aa15.55■□□□□ 0.08
CCDC144A-203ENST00000360495 TMEM132EQ6IEE7 984 aa15.55■□□□□ 0.08
CCDC144A-203ENST00000360495 ZSCAN25Q6NSZ9 544 aa15.55■□□□□ 0.08
CCDC144A-203ENST00000360495 CEP112Q8N8E3 955 aa15.55■□□□□ 0.08
CCDC144A-203ENST00000360495 UBAC1Q9BSL1 405 aa15.55■□□□□ 0.08
CCDC144A-203ENST00000360495 CETN2P41208 172 aa15.55■□□□□ 0.08
CCDC144A-203ENST00000360495 SPATA24Q86W54 205 aa15.55■□□□□ 0.08
CCDC144A-203ENST00000360495 SMAP1Q8IYB5 467 aaPredicted RBP15.55■□□□□ 0.08
CCDC144A-203ENST00000360495 LIMCH1Q9UPQ0 1083 aa15.55■□□□□ 0.08
CCDC144A-203ENST00000360495 FKBP4Q02790 459 aaKnown RBP eCLIP15.55■□□□□ 0.08
CCDC144A-203ENST00000360495 WIZO95785 1651 aa15.55■□□□□ 0.08
CCDC144A-203ENST00000360495 ALS2CR12Q96Q35 445 aa15.55■□□□□ 0.08
CCDC144A-203ENST00000360495 STAMBPO95630 424 aa15.54■□□□□ 0.08
CCDC144A-203ENST00000360495 MCM6Q14566 821 aa15.54■□□□□ 0.08
CCDC144A-203ENST00000360495 ZNF428Q96B54 188 aa15.54■□□□□ 0.08
CCDC144A-203ENST00000360495 TBC1D32Q96NH3 1257 aa15.54■□□□□ 0.08
CCDC144A-203ENST00000360495 HSF2BPO75031 334 aa15.54■□□□□ 0.08
CCDC144A-203ENST00000360495 CAPN2P17655 700 aa15.54■□□□□ 0.08
CCDC144A-203ENST00000360495 UBE2HP62256 183 aa15.54■□□□□ 0.08
CCDC144A-203ENST00000360495 NBPF8Q3BBV2 869 aa15.54■□□□□ 0.08
CCDC144A-203ENST00000360495 BIN1O00499 593 aa15.54■□□□□ 0.08
CCDC144A-203ENST00000360495 SMARCA5O60264 1052 aaPredicted RBP15.54■□□□□ 0.08
CCDC144A-203ENST00000360495 RRBP1Q9P2E9 1410 aaKnown RBP15.54■□□□□ 0.08
CCDC144A-203ENST00000360495 VPS36Q86VN1 386 aa15.53■□□□□ 0.08
CCDC144A-203ENST00000360495 CAVIN2O95810 425 aa15.53■□□□□ 0.08
CCDC144A-203ENST00000360495 NLRP2Q9NX02 1062 aa15.53■□□□□ 0.08
CCDC144A-203ENST00000360495 STX6O43752 255 aa15.53■□□□□ 0.08
CCDC144A-203ENST00000360495 GUCY1B3Q02153 619 aa15.53■□□□□ 0.08
CCDC144A-203ENST00000360495 TDRD12Q587J7 1177 aaKnown RBP15.53■□□□□ 0.08
CCDC144A-203ENST00000360495 CNNM3Q8NE01 707 aa15.53■□□□□ 0.08
CCDC144A-203ENST00000360495 DDX54Q8TDD1 881 aaKnown RBP15.53■□□□□ 0.08
CCDC144A-203ENST00000360495 C8orf76Q96K31 380 aa15.53■□□□□ 0.08
CCDC144A-203ENST00000360495 ZNF644Q9H582 1327 aaPredicted RBP15.53■□□□□ 0.08
CCDC144A-203ENST00000360495 CUX1P39880 1505 aa15.53■□□□□ 0.08
CCDC144A-203ENST00000360495 SRRTQ9BXP5 876 aaKnown RBP15.52■□□□□ 0.08
CCDC144A-203ENST00000360495 TFIP11Q9UBB9 837 aaKnown RBP15.52■□□□□ 0.08
CCDC144A-203ENST00000360495 ANKRD50Q9ULJ7 1429 aa15.52■□□□□ 0.08
CCDC144A-203ENST00000360495 RAB11FIP3O75154 756 aa15.52■□□□□ 0.08
CCDC144A-203ENST00000360495 SKILP12757 684 aa15.52■□□□□ 0.08
CCDC144A-203ENST00000360495 NUTM2GQ5VZR2 741 aa15.52■□□□□ 0.08
CCDC144A-203ENST00000360495 MATR3P43243 847 aaKnown RBP eCLIP15.52■□□□□ 0.07
CCDC144A-203ENST00000360495 WWC2Q6AWC2 1192 aa15.52■□□□□ 0.07
CCDC144A-203ENST00000360495 GIMAP6Q6P9H5 292 aa15.52■□□□□ 0.07
CCDC144A-203ENST00000360495 C10orf67Q8IYJ2 551 aa15.52■□□□□ 0.07
CCDC144A-203ENST00000360495 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.52■□□□□ 0.07
CCDC144A-203ENST00000360495 DNAI1Q9UI46 699 aa15.52■□□□□ 0.07
CCDC144A-203ENST00000360495 V9GYY5 206 aaPredicted RBP15.52■□□□□ 0.07
CCDC144A-203ENST00000360495 SLU7O95391 586 aaKnown RBP15.52■□□□□ 0.07
CCDC144A-203ENST00000360495 CCDC186Q7Z3E2 898 aa15.52■□□□□ 0.07
CCDC144A-203ENST00000360495 CEP57Q86XR8 500 aa15.52■□□□□ 0.07
CCDC144A-203ENST00000360495 FBF1Q8TES7 1133 aa15.52■□□□□ 0.07
CCDC144A-203ENST00000360495 RASSF4Q9H2L5 321 aa15.52■□□□□ 0.07
CCDC144A-203ENST00000360495 GNL3LQ9NVN8 582 aaKnown RBP15.52■□□□□ 0.07
CCDC144A-203ENST00000360495 C6orf163Q5TEZ5 329 aa15.51■□□□□ 0.07
CCDC144A-203ENST00000360495 JADE2Q9NQC1 790 aa15.51■□□□□ 0.07
CCDC144A-203ENST00000360495 FAM177BA6PVY3 158 aa15.51■□□□□ 0.07
CCDC144A-203ENST00000360495 TDO2P48775 406 aa15.51■□□□□ 0.07
CCDC144A-203ENST00000360495 ATP2B2Q01814 1243 aa15.51■□□□□ 0.07
CCDC144A-203ENST00000360495 NLRP6P59044 892 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms