RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 ZFYVE9O95405 1425 aa10.55□□□□□ -0.72
VPS13A-201ENST00000355766 KANK1Q14678 1352 aa10.54□□□□□ -0.72
VPS13A-201ENST00000355766 CCDC24Q8N4L8 307 aa10.54□□□□□ -0.72
VPS13A-201ENST00000355766 CFAP65Q6ZU64 1925 aaKnown RBP10.53□□□□□ -0.72
VPS13A-201ENST00000355766 WNT7AO00755 349 aa10.53□□□□□ -0.72
VPS13A-201ENST00000355766 PCDHGC3Q9UN70 934 aa10.53□□□□□ -0.72
VPS13A-201ENST00000355766 CHD2O14647 1828 aaKnown RBP10.53□□□□□ -0.72
VPS13A-201ENST00000355766 AFF2P51816 1311 aa10.53□□□□□ -0.72
VPS13A-201ENST00000355766 FDX1P10109 184 aa10.52□□□□□ -0.73
VPS13A-201ENST00000355766 JUNDP17535 347 aa10.52□□□□□ -0.73
VPS13A-201ENST00000355766 TTLL12Q14166 644 aaPredicted RBP10.52□□□□□ -0.73
VPS13A-201ENST00000355766 AMHR2Q16671 573 aa10.52□□□□□ -0.73
VPS13A-201ENST00000355766 SPIRE2Q8WWL2 714 aa10.52□□□□□ -0.73
VPS13A-201ENST00000355766 ZNF775Q96BV0 537 aaPredicted RBP10.52□□□□□ -0.73
VPS13A-201ENST00000355766 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.52□□□□□ -0.73
VPS13A-201ENST00000355766 TTC24A2A3L6 582 aaPredicted RBP10.51□□□□□ -0.73
VPS13A-201ENST00000355766 AVPP01185 164 aa10.51□□□□□ -0.73
VPS13A-201ENST00000355766 RETREG3Q86VR2 466 aa10.51□□□□□ -0.73
VPS13A-201ENST00000355766 BCANQ96GW7 911 aa10.51□□□□□ -0.73
VPS13A-201ENST00000355766 ASXL1Q8IXJ9 1541 aa10.51□□□□□ -0.73
VPS13A-201ENST00000355766 ABCC5O15440 1437 aa10.5□□□□□ -0.73
VPS13A-201ENST00000355766 DCCP43146 1447 aa10.5□□□□□ -0.73
VPS13A-201ENST00000355766 SETD5Q9C0A6 1442 aa10.5□□□□□ -0.73
VPS13A-201ENST00000355766 RIMS2Q9UQ26 1411 aa10.5□□□□□ -0.73
VPS13A-201ENST00000355766 NUTM2BA6NNL0 878 aaPredicted RBP10.5□□□□□ -0.73
VPS13A-201ENST00000355766 NUTM2EB1AL46 878 aaPredicted RBP10.5□□□□□ -0.73
VPS13A-201ENST00000355766 NUTM2AQ8IVF1 878 aaPredicted RBP10.5□□□□□ -0.73
VPS13A-201ENST00000355766 CRIPAKQ8N1N5 446 aa10.5□□□□□ -0.73
VPS13A-201ENST00000355766 MRGPRX2Q96LB1 330 aa10.5□□□□□ -0.73
VPS13A-201ENST00000355766 ADAMTS13Q76LX8 1427 aa10.5□□□□□ -0.73
VPS13A-201ENST00000355766 RPRD2Q5VT52 1461 aaKnown RBP10.49□□□□□ -0.73
VPS13A-201ENST00000355766 NHSL1Q5SYE7 1610 aa10.49□□□□□ -0.73
VPS13A-201ENST00000355766 NDUFV2P19404 249 aa10.49□□□□□ -0.73
VPS13A-201ENST00000355766 GIGYF2Q6Y7W6 1299 aaKnown RBP10.49□□□□□ -0.73
VPS13A-201ENST00000355766 BRINP3Q76B58 766 aa10.49□□□□□ -0.73
VPS13A-201ENST00000355766 C14orf37Q86TY3 774 aa10.49□□□□□ -0.73
VPS13A-201ENST00000355766 SNIP1Q8TAD8 396 aaKnown RBP10.49□□□□□ -0.73
VPS13A-201ENST00000355766 SLC52A1Q9NWF4 448 aa10.49□□□□□ -0.73
VPS13A-201ENST00000355766 DACH1Q9UI36 760 aa10.49□□□□□ -0.73
VPS13A-201ENST00000355766 ATAD2Q6PL18 1390 aa10.49□□□□□ -0.73
VPS13A-201ENST00000355766 GCC2Q8IWJ2 1684 aa10.48□□□□□ -0.73
VPS13A-201ENST00000355766 C6orf229H3BNL8 230 aa10.48□□□□□ -0.73
VPS13A-201ENST00000355766 PPP1R15AO75807 674 aaPredicted RBP10.48□□□□□ -0.73
VPS13A-201ENST00000355766 ATF3P18847 181 aa10.48□□□□□ -0.73
VPS13A-201ENST00000355766 RBM6P78332 1123 aaKnown RBP10.48□□□□□ -0.73
VPS13A-201ENST00000355766 C19orf44Q9H6X5 657 aa10.48□□□□□ -0.73
VPS13A-201ENST00000355766 RRP7BPQ9NSQ0 103 aa10.48□□□□□ -0.73
VPS13A-201ENST00000355766 TBX22Q9Y458 520 aa10.48□□□□□ -0.73
VPS13A-201ENST00000355766 PIK3R4Q99570 1358 aa10.48□□□□□ -0.73
VPS13A-201ENST00000355766 DAPK1P53355 1430 aa10.48□□□□□ -0.73
VPS13A-201ENST00000355766 SETBP1Q9Y6X0 1596 aa10.48□□□□□ -0.73
VPS13A-201ENST00000355766 TMEM131LA2VDJ0 1609 aa10.47□□□□□ -0.73
VPS13A-201ENST00000355766 MOXD2PA6NHM9 499 aa10.47□□□□□ -0.73
VPS13A-201ENST00000355766 SMPD1P17405 629 aa10.47□□□□□ -0.73
VPS13A-201ENST00000355766 SKOR1P84550 965 aa10.47□□□□□ -0.73
VPS13A-201ENST00000355766 TRPM2O94759 1503 aa10.47□□□□□ -0.73
VPS13A-201ENST00000355766 AXIN1O15169 862 aa10.46□□□□□ -0.73
VPS13A-201ENST00000355766 NUTM2DQ5VT03 806 aaPredicted RBP10.46□□□□□ -0.73
VPS13A-201ENST00000355766 PTCRAQ6ISU1 281 aaPredicted RBP10.46□□□□□ -0.73
VPS13A-201ENST00000355766 PNPLA6Q8IY17 1366 aa10.46□□□□□ -0.74
VPS13A-201ENST00000355766 MST1RQ04912 1400 aa10.46□□□□□ -0.74
VPS13A-201ENST00000355766 PTPN23Q9H3S7 1636 aa10.45□□□□□ -0.74
VPS13A-201ENST00000355766 RRBP1Q9P2E9 1410 aaKnown RBP10.45□□□□□ -0.74
VPS13A-201ENST00000355766 J3QL48 77 aa10.45□□□□□ -0.74
VPS13A-201ENST00000355766 SMCPP49901 116 aaPredicted RBP10.45□□□□□ -0.74
VPS13A-201ENST00000355766 CTC1Q2NKJ3 1217 aa10.45□□□□□ -0.74
VPS13A-201ENST00000355766 RC3H1Q5TC82 1133 aaKnown RBP10.45□□□□□ -0.74
VPS13A-201ENST00000355766 C8orf37Q96NL8 207 aa10.45□□□□□ -0.74
VPS13A-201ENST00000355766 NUDT12Q9BQG2 462 aa10.45□□□□□ -0.74
VPS13A-201ENST00000355766 BEGAINQ9BUH8 593 aa10.45□□□□□ -0.74
VPS13A-201ENST00000355766 PCGF6Q9BYE7 350 aa10.45□□□□□ -0.74
VPS13A-201ENST00000355766 QTRT2Q9H974 415 aaKnown RBP10.45□□□□□ -0.74
VPS13A-201ENST00000355766 ANKRD30AQ9BXX3 1397 aa10.44□□□□□ -0.74
VPS13A-201ENST00000355766 WNT7BP56706 349 aa10.44□□□□□ -0.74
VPS13A-201ENST00000355766 XRN1Q8IZH2 1706 aaKnown RBP10.44□□□□□ -0.74
VPS13A-201ENST00000355766 PTPRUQ92729 1446 aa10.43□□□□□ -0.74
VPS13A-201ENST00000355766 MYO5BQ9ULV0 1848 aa10.43□□□□□ -0.74
VPS13A-201ENST00000355766 TRIM66O15016 1216 aa10.43□□□□□ -0.74
VPS13A-201ENST00000355766 PARP9Q8IXQ6 854 aa10.43□□□□□ -0.74
VPS13A-201ENST00000355766 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.43□□□□□ -0.74
VPS13A-201ENST00000355766 NGLY1Q96IV0 654 aa10.43□□□□□ -0.74
VPS13A-201ENST00000355766 MS4A1P11836 297 aa10.42□□□□□ -0.74
VPS13A-201ENST00000355766 KANK4Q5T7N3 995 aaPredicted RBP10.42□□□□□ -0.74
VPS13A-201ENST00000355766 LRRC59Q96AG4 307 aaKnown RBP10.42□□□□□ -0.74
VPS13A-201ENST00000355766 UNC13BO14795 1591 aa10.42□□□□□ -0.74
VPS13A-201ENST00000355766 ADGRL2O95490 1459 aa10.42□□□□□ -0.74
VPS13A-201ENST00000355766 TBC1D2Q9BYX2 928 aa10.41□□□□□ -0.74
VPS13A-201ENST00000355766 GMPR2Q9P2T1 348 aaKnown RBP10.41□□□□□ -0.74
VPS13A-201ENST00000355766 CCNYL3P0C7X3 344 aa10.4□□□□□ -0.74
VPS13A-201ENST00000355766 PRR7Q8TB68 274 aa10.4□□□□□ -0.74
VPS13A-201ENST00000355766 HPS1Q92902 700 aa10.4□□□□□ -0.74
VPS13A-201ENST00000355766 AK7Q96M32 723 aa10.4□□□□□ -0.74
VPS13A-201ENST00000355766 AMOTL2Q9Y2J4 779 aa10.4□□□□□ -0.74
VPS13A-201ENST00000355766 ATRNO75882 1429 aa10.4□□□□□ -0.75
VPS13A-201ENST00000355766 ADGRL3Q9HAR2 1447 aa10.4□□□□□ -0.75
VPS13A-201ENST00000355766 MTMR2Q13614 643 aa10.39□□□□□ -0.75
VPS13A-201ENST00000355766 EP400Q96L91 3159 aa10.39□□□□□ -0.75
VPS13A-201ENST00000355766 LAMC1P11047 1609 aa10.39□□□□□ -0.75
VPS13A-201ENST00000355766 NRXN3Q9Y4C0 1643 aa10.39□□□□□ -0.75
VPS13A-201ENST00000355766 PTCH1Q13635 1447 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms