RNA–Protein interactions for RNA: ENST00000355430.4

COLCA1-201, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,442 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-201ENST00000355430 UPF3BQ9BZI7 483 aaKnown RBP14.67□□□□□ -0.06
COLCA1-201ENST00000355430 KCNA6P17658 529 aa14.67□□□□□ -0.06
COLCA1-201ENST00000355430 MX1P20591 662 aa14.67□□□□□ -0.06
COLCA1-201ENST00000355430 CREBRFQ8IUR6 639 aa14.67□□□□□ -0.06
COLCA1-201ENST00000355430 CYP46A1Q9Y6A2 500 aa14.67□□□□□ -0.06
COLCA1-201ENST00000355430 CFAP74Q9C0B2 1584 aa14.67□□□□□ -0.06
COLCA1-201ENST00000355430 TTC22Q5TAA0 569 aa14.67□□□□□ -0.06
COLCA1-201ENST00000355430 IGHMBP2P38935 993 aaKnown RBP14.66□□□□□ -0.06
COLCA1-201ENST00000355430 CWC27Q6UX04 472 aaKnown RBP14.66□□□□□ -0.06
COLCA1-201ENST00000355430 ANKRD24Q8TF21 1146 aa14.66□□□□□ -0.06
COLCA1-201ENST00000355430 SLC3A2P08195 630 aaKnown RBP14.66□□□□□ -0.06
COLCA1-201ENST00000355430 RBM5P52756 815 aaKnown RBP eCLIP14.66□□□□□ -0.06
COLCA1-201ENST00000355430 CCDC158Q5M9N0 1113 aa14.66□□□□□ -0.06
COLCA1-201ENST00000355430 HSP90AB3PQ58FF7 597 aa14.66□□□□□ -0.06
COLCA1-201ENST00000355430 RBM27Q9P2N5 1060 aaKnown RBP14.66□□□□□ -0.06
COLCA1-201ENST00000355430 SRGAP3O43295 1099 aa14.65□□□□□ -0.06
COLCA1-201ENST00000355430 DDB1Q16531 1140 aa14.65□□□□□ -0.06
COLCA1-201ENST00000355430 USHBP1Q8N6Y0 703 aa14.65□□□□□ -0.06
COLCA1-201ENST00000355430 A0A087WZG4 1122 aa14.65□□□□□ -0.06
COLCA1-201ENST00000355430 SNX21Q969T3 373 aa14.65□□□□□ -0.06
COLCA1-201ENST00000355430 PKNOX2Q96KN3 472 aa14.65□□□□□ -0.06
COLCA1-201ENST00000355430 STK3Q13188 491 aa14.65□□□□□ -0.06
COLCA1-201ENST00000355430 TPD52L1Q16890 204 aaPredicted RBP14.65□□□□□ -0.06
COLCA1-201ENST00000355430 CPLX1O14810 134 aa14.64□□□□□ -0.07
COLCA1-201ENST00000355430 WDHD1O75717 1129 aaPredicted RBP14.64□□□□□ -0.07
COLCA1-201ENST00000355430 AEBP1Q8IUX7 1158 aa14.64□□□□□ -0.07
COLCA1-201ENST00000355430 SMARCC1Q92922 1105 aaPredicted RBP14.64□□□□□ -0.07
COLCA1-201ENST00000355430 HMGN5P82970 282 aaKnown RBP14.64□□□□□ -0.07
COLCA1-201ENST00000355430 CCDC192P0DO97 292 aa14.64□□□□□ -0.07
COLCA1-201ENST00000355430 KLHL40Q2TBA0 621 aa14.64□□□□□ -0.07
COLCA1-201ENST00000355430 TTC39AQ5SRH9 613 aa14.64□□□□□ -0.07
COLCA1-201ENST00000355430 NFXL1Q6ZNB6 911 aa14.64□□□□□ -0.07
COLCA1-201ENST00000355430 MRPL50Q8N5N7 158 aaKnown RBP14.64□□□□□ -0.07
COLCA1-201ENST00000355430 JAKMIP1Q96N16 626 aaKnown RBP14.64□□□□□ -0.07
COLCA1-201ENST00000355430 TMOD2Q9NZR1 351 aa14.64□□□□□ -0.07
COLCA1-201ENST00000355430 NPC1L1Q9UHC9 1359 aa14.64□□□□□ -0.07
COLCA1-201ENST00000355430 CLCN1P35523 988 aa14.63□□□□□ -0.07
COLCA1-201ENST00000355430 TRIM29Q14134 588 aa14.63□□□□□ -0.07
COLCA1-201ENST00000355430 PDRG1Q9NUG6 133 aa14.63□□□□□ -0.07
COLCA1-201ENST00000355430 PDCP20941 246 aa14.63□□□□□ -0.07
COLCA1-201ENST00000355430 CEBPZQ03701 1054 aaKnown RBP14.63□□□□□ -0.07
COLCA1-201ENST00000355430 HOMER1Q86YM7 354 aa14.63□□□□□ -0.07
COLCA1-201ENST00000355430 CCAR2Q8N163 923 aaKnown RBP14.63□□□□□ -0.07
COLCA1-201ENST00000355430 DNAJC2Q99543 621 aaKnown RBP14.63□□□□□ -0.07
COLCA1-201ENST00000355430 IKQ13123 557 aaPredicted RBP14.63□□□□□ -0.07
COLCA1-201ENST00000355430 POLD1P28340 1107 aa14.63□□□□□ -0.07
COLCA1-201ENST00000355430 HIP1O00291 1037 aa14.63□□□□□ -0.07
COLCA1-201ENST00000355430 ZSCAN23Q3MJ62 389 aa14.63□□□□□ -0.07
COLCA1-201ENST00000355430 RPGRQ92834 1020 aaKnown RBP14.63□□□□□ -0.07
COLCA1-201ENST00000355430 ZBTB40Q9NUA8 1239 aa14.63□□□□□ -0.07
COLCA1-201ENST00000355430 RFC4P35249 363 aa14.62□□□□□ -0.07
COLCA1-201ENST00000355430 TSHZ3Q63HK5 1081 aa14.62□□□□□ -0.07
COLCA1-201ENST00000355430 FMNL2Q96PY5 1086 aa14.62□□□□□ -0.07
COLCA1-201ENST00000355430 LARP1BQ659C4 914 aaKnown RBP14.62□□□□□ -0.07
COLCA1-201ENST00000355430 RALYLQ86SE5 291 aaKnown RBP14.62□□□□□ -0.07
COLCA1-201ENST00000355430 SIL1Q9H173 461 aa14.62□□□□□ -0.07
COLCA1-201ENST00000355430 CASTP20810 708 aaKnown RBP14.62□□□□□ -0.07
COLCA1-201ENST00000355430 SMC5Q8IY18 1101 aa14.62□□□□□ -0.07
COLCA1-201ENST00000355430 ARHGAP45Q92619 1136 aa14.62□□□□□ -0.07
COLCA1-201ENST00000355430 MBD5Q9P267 1494 aa14.62□□□□□ -0.07
COLCA1-201ENST00000355430 TNMDQ9H2S6 317 aa14.61□□□□□ -0.07
COLCA1-201ENST00000355430 ATP7AQ04656 1500 aa14.61□□□□□ -0.07
COLCA1-201ENST00000355430 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.61□□□□□ -0.07
COLCA1-201ENST00000355430 BCORL1Q5H9F3 1711 aa14.61□□□□□ -0.07
COLCA1-201ENST00000355430 MAGI2Q86UL8 1455 aa14.61□□□□□ -0.07
COLCA1-201ENST00000355430 TAF7Q15545 349 aaPredicted RBP14.61□□□□□ -0.07
COLCA1-201ENST00000355430 ZCRB1Q8TBF4 217 aaKnown RBP14.61□□□□□ -0.07
COLCA1-201ENST00000355430 GDPD2Q9HCC8 539 aa14.61□□□□□ -0.07
COLCA1-201ENST00000355430 TARBP1Q13395 1621 aaKnown RBP14.61□□□□□ -0.07
COLCA1-201ENST00000355430 SDSP20132 328 aa14.6□□□□□ -0.07
COLCA1-201ENST00000355430 KRT85P78386 507 aa14.6□□□□□ -0.07
COLCA1-201ENST00000355430 RAB3GAP1Q15042 981 aa14.6□□□□□ -0.07
COLCA1-201ENST00000355430 AACSQ86V21 672 aa14.6□□□□□ -0.07
COLCA1-201ENST00000355430 C16orf71Q8IYS4 520 aaPredicted RBP14.6□□□□□ -0.07
COLCA1-201ENST00000355430 CCDC43Q96MW1 224 aaKnown RBP14.6□□□□□ -0.07
COLCA1-201ENST00000355430 PTPRCP08575 1304 aa14.6□□□□□ -0.07
COLCA1-201ENST00000355430 C8orf58Q8NAV2 365 aa14.6□□□□□ -0.07
COLCA1-201ENST00000355430 RRAGDQ9NQL2 400 aaPredicted RBP14.6□□□□□ -0.07
COLCA1-201ENST00000355430 CCDC83Q8IWF9 413 aa14.59□□□□□ -0.07
COLCA1-201ENST00000355430 SDF4Q9BRK5 362 aa14.59□□□□□ -0.07
COLCA1-201ENST00000355430 LRRFIP2Q9Y608 721 aaKnown RBP14.59□□□□□ -0.07
COLCA1-201ENST00000355430 TSPYL6Q8N831 410 aa14.59□□□□□ -0.07
COLCA1-201ENST00000355430 CDCA7Q9BWT1 371 aaPredicted RBP14.59□□□□□ -0.07
COLCA1-201ENST00000355430 LARP6Q9BRS8 491 aaKnown RBP14.59□□□□□ -0.07
COLCA1-201ENST00000355430 TRPM2O94759 1503 aa14.58□□□□□ -0.07
COLCA1-201ENST00000355430 NAT10Q9H0A0 1025 aaKnown RBP14.58□□□□□ -0.07
COLCA1-201ENST00000355430 ZSCAN31Q96LW9 406 aaPredicted RBP14.58□□□□□ -0.08
COLCA1-201ENST00000355430 KINO60870 393 aaKnown RBP14.58□□□□□ -0.08
COLCA1-201ENST00000355430 SART3Q15020 963 aaKnown RBP14.58□□□□□ -0.08
COLCA1-201ENST00000355430 TNNT3P45378 269 aaPredicted RBP14.58□□□□□ -0.08
COLCA1-201ENST00000355430 CCDC183Q5T5S1 534 aa14.58□□□□□ -0.08
COLCA1-201ENST00000355430 PPIP5K1Q6PFW1 1433 aa14.57□□□□□ -0.08
COLCA1-201ENST00000355430 MEIS3Q99687 375 aa14.57□□□□□ -0.08
COLCA1-201ENST00000355430 ST5P78524 1137 aa14.57□□□□□ -0.08
COLCA1-201ENST00000355430 ANKRD1Q15327 319 aa14.57□□□□□ -0.08
COLCA1-201ENST00000355430 NUP62CLQ9H1M0 184 aa14.57□□□□□ -0.08
COLCA1-201ENST00000355430 LARP1Q6PKG0 1096 aaKnown RBP14.57□□□□□ -0.08
COLCA1-201ENST00000355430 SPATA32Q96LK8 384 aa14.57□□□□□ -0.08
COLCA1-201ENST00000355430 KDM4AO75164 1064 aa14.57□□□□□ -0.08
COLCA1-201ENST00000355430 IL2RBP14784 551 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms