RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 DCAF5Q96JK2 942 aa11.89□□□□□ -0.51
USP4-202ENST00000351842 COL14A1Q05707 1796 aaKnown RBP11.89□□□□□ -0.51
USP4-202ENST00000351842 RCAN3Q9UKA8 241 aa11.89□□□□□ -0.51
USP4-202ENST00000351842 PLCH1Q4KWH8 1693 aa11.89□□□□□ -0.51
USP4-202ENST00000351842 MYL6BP14649 208 aa11.88□□□□□ -0.51
USP4-202ENST00000351842 RBM6P78332 1123 aaKnown RBP11.88□□□□□ -0.51
USP4-202ENST00000351842 SMC4Q9NTJ3 1288 aa11.88□□□□□ -0.51
USP4-202ENST00000351842 AIMP1Q12904 312 aaKnown RBP11.88□□□□□ -0.51
USP4-202ENST00000351842 TWISTNBQ3B726 338 aaPredicted RBP11.88□□□□□ -0.51
USP4-202ENST00000351842 PIGBQ92521 554 aa11.88□□□□□ -0.51
USP4-202ENST00000351842 CFAP44Q96MT7 982 aa11.88□□□□□ -0.51
USP4-202ENST00000351842 KRT27Q7Z3Y8 459 aa11.88□□□□□ -0.51
USP4-202ENST00000351842 SLC52A2Q9HAB3 445 aa11.88□□□□□ -0.51
USP4-202ENST00000351842 ERICH6Q7L0X2 663 aa11.87□□□□□ -0.51
USP4-202ENST00000351842 ZNF496Q96IT1 587 aaPredicted RBP11.87□□□□□ -0.51
USP4-202ENST00000351842 LMO7Q8WWI1 1683 aa11.87□□□□□ -0.51
USP4-202ENST00000351842 CALD1Q05682 793 aaKnown RBP11.87□□□□□ -0.51
USP4-202ENST00000351842 WDR63Q8IWG1 891 aa11.87□□□□□ -0.51
USP4-202ENST00000351842 OVOS2A0A0G2JMS6 1433 aa11.87□□□□□ -0.51
USP4-202ENST00000351842 COL22A1Q8NFW1 1626 aaPredicted RBP11.87□□□□□ -0.51
USP4-202ENST00000351842 TNNQ9UQP3 1299 aa11.86□□□□□ -0.51
USP4-202ENST00000351842 ZNF521Q96K83 1311 aa11.86□□□□□ -0.51
USP4-202ENST00000351842 FKBP8Q14318 412 aa11.86□□□□□ -0.51
USP4-202ENST00000351842 HSP90AB1P08238 724 aaKnown RBP11.86□□□□□ -0.51
USP4-202ENST00000351842 KDM6AO15550 1401 aaPredicted RBP11.85□□□□□ -0.51
USP4-202ENST00000351842 ZNF790Q6PG37 636 aa11.85□□□□□ -0.51
USP4-202ENST00000351842 IFT57Q9NWB7 429 aa11.85□□□□□ -0.51
USP4-202ENST00000351842 THRAP3Q9Y2W1 955 aaKnown RBP11.85□□□□□ -0.51
USP4-202ENST00000351842 DLG5Q8TDM6 1919 aa11.85□□□□□ -0.51
USP4-202ENST00000351842 NEFLP07196 543 aa11.85□□□□□ -0.51
USP4-202ENST00000351842 HDGFL1Q5TGJ6 251 aa11.84□□□□□ -0.51
USP4-202ENST00000351842 BARGINQ6ZT62 677 aa11.84□□□□□ -0.51
USP4-202ENST00000351842 USP54Q70EL1 1684 aa11.84□□□□□ -0.51
USP4-202ENST00000351842 SLC4A10Q6U841 1118 aa11.84□□□□□ -0.51
USP4-202ENST00000351842 CCDC27Q2M243 656 aa11.84□□□□□ -0.51
USP4-202ENST00000351842 SSH1Q8WYL5 1049 aa11.84□□□□□ -0.51
USP4-202ENST00000351842 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.84□□□□□ -0.512e-6■■■□□ 16.6
USP4-202ENST00000351842 RGPD1P0DJD0 1748 aa11.83□□□□□ -0.51
USP4-202ENST00000351842 CHL1O00533 1208 aa11.83□□□□□ -0.52
USP4-202ENST00000351842 CDCA7Q9BWT1 371 aaPredicted RBP11.83□□□□□ -0.52
USP4-202ENST00000351842 USP16Q9Y5T5 823 aa11.83□□□□□ -0.52
USP4-202ENST00000351842 SLC4A2P04920 1241 aa11.83□□□□□ -0.52
USP4-202ENST00000351842 C20orf194Q5TEA3 1177 aa11.82□□□□□ -0.52
USP4-202ENST00000351842 A1BGP04217 495 aa11.82□□□□□ -0.52
USP4-202ENST00000351842 ATP6V1AP38606 617 aa11.82□□□□□ -0.52
USP4-202ENST00000351842 RTL5Q5HYW3 569 aaPredicted RBP11.82□□□□□ -0.52
USP4-202ENST00000351842 DNAJC10Q8IXB1 793 aa11.82□□□□□ -0.52
USP4-202ENST00000351842 F6X3S4 739 aa11.81□□□□□ -0.52
USP4-202ENST00000351842 PHF14O94880 888 aa11.81□□□□□ -0.52
USP4-202ENST00000351842 NPM2Q86SE8 214 aaKnown RBP11.81□□□□□ -0.52
USP4-202ENST00000351842 PANK1Q8TE04 598 aa11.81□□□□□ -0.52
USP4-202ENST00000351842 CHPF2Q9P2E5 772 aa11.81□□□□□ -0.52
USP4-202ENST00000351842 APBA3O96018 575 aa11.81□□□□□ -0.52
USP4-202ENST00000351842 PROSER3Q2NL68 480 aa11.81□□□□□ -0.52
USP4-202ENST00000351842 STK31Q9BXU1 1019 aa11.81□□□□□ -0.52
USP4-202ENST00000351842 ATG3Q9NT62 314 aa11.81□□□□□ -0.52
USP4-202ENST00000351842 FAM208AQ9UK61 1670 aaKnown RBP11.81□□□□□ -0.52
USP4-202ENST00000351842 MSH5O43196 834 aa11.81□□□□□ -0.52
USP4-202ENST00000351842 EIF4A1P60842 406 aaKnown RBP11.81□□□□□ -0.52
USP4-202ENST00000351842 G2E3Q7L622 706 aa11.81□□□□□ -0.52
USP4-202ENST00000351842 FAM177BA6PVY3 158 aa11.8□□□□□ -0.52
USP4-202ENST00000351842 PHAXQ9H814 394 aaKnown RBP11.8□□□□□ -0.52
USP4-202ENST00000351842 VAMP4O75379 141 aa11.8□□□□□ -0.52
USP4-202ENST00000351842 FKBP5Q13451 457 aaPredicted RBP11.8□□□□□ -0.52
USP4-202ENST00000351842 DEFB132Q7Z7B7 95 aa11.8□□□□□ -0.52
USP4-202ENST00000351842 FMNL2Q96PY5 1086 aa11.8□□□□□ -0.52
USP4-202ENST00000351842 NOB1Q9ULX3 412 aaKnown RBP11.8□□□□□ -0.52
USP4-202ENST00000351842 TNS2Q63HR2 1409 aa11.8□□□□□ -0.52
USP4-202ENST00000351842 GLI3P10071 1580 aa11.79□□□□□ -0.52
USP4-202ENST00000351842 ATRNO75882 1429 aa11.79□□□□□ -0.52
USP4-202ENST00000351842 HTATSF1O43719 755 aaKnown RBP11.79□□□□□ -0.52
USP4-202ENST00000351842 FTSJ3Q8IY81 847 aaKnown RBP11.79□□□□□ -0.52
USP4-202ENST00000351842 ZNF853P0CG23 659 aa11.79□□□□□ -0.52
USP4-202ENST00000351842 RARSP54136 660 aaKnown RBP11.79□□□□□ -0.52
USP4-202ENST00000351842 ERVV-2B6SEH9 535 aa11.79□□□□□ -0.52
USP4-202ENST00000351842 COG6Q9Y2V7 657 aa11.79□□□□□ -0.52
USP4-202ENST00000351842 DISP2A7MBM2 1401 aa11.78□□□□□ -0.52
USP4-202ENST00000351842 CEMIPQ8WUJ3 1361 aa11.78□□□□□ -0.52
USP4-202ENST00000351842 JARID2Q92833 1246 aaPredicted RBP11.78□□□□□ -0.52
USP4-202ENST00000351842 GIGYF1O75420 1035 aaPredicted RBP11.77□□□□□ -0.52
USP4-202ENST00000351842 NRAPQ86VF7 1730 aa11.77□□□□□ -0.52
USP4-202ENST00000351842 LOC102724428A0A0B4J2F2 783 aa11.77□□□□□ -0.53
USP4-202ENST00000351842 SIK1P57059 783 aa11.77□□□□□ -0.53
USP4-202ENST00000351842 EN1Q05925 392 aaPredicted RBP11.77□□□□□ -0.53
USP4-202ENST00000351842 FAM196AQ6ZSG2 479 aa11.77□□□□□ -0.53
USP4-202ENST00000351842 ZBTB3Q9H5J0 574 aa11.77□□□□□ -0.53
USP4-202ENST00000351842 CCNL1Q9UK58 526 aaPredicted RBP11.77□□□□□ -0.53
USP4-202ENST00000351842 SLC4A9Q96Q91 983 aa11.77□□□□□ -0.53
USP4-202ENST00000351842 TBC1D2BQ9UPU7 963 aa11.77□□□□□ -0.53
USP4-202ENST00000351842 SNRPA1P09661 255 aaKnown RBP11.76□□□□□ -0.53
USP4-202ENST00000351842 ITPRIPQ8IWB1 547 aa11.76□□□□□ -0.53
USP4-202ENST00000351842 PALLDQ8WX93 1383 aa11.76□□□□□ -0.53
USP4-202ENST00000351842 IL16Q14005 1332 aa11.76□□□□□ -0.53
USP4-202ENST00000351842 RGS12O14924 1447 aa11.76□□□□□ -0.53
USP4-202ENST00000351842 NCAPD2Q15021 1401 aa11.75□□□□□ -0.53
USP4-202ENST00000351842 RRP1P56182 461 aaKnown RBP11.75□□□□□ -0.53
USP4-202ENST00000351842 SF3B2Q13435 895 aaKnown RBP11.75□□□□□ -0.53
USP4-202ENST00000351842 NWD2Q9ULI1 1742 aa11.75□□□□□ -0.53
USP4-202ENST00000351842 NKX1-1Q15270 411 aaPredicted RBP11.75□□□□□ -0.53
USP4-202ENST00000351842 CCDC30Q5VVM6 783 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 96.8 ms