RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 RAB3GAP1Q15042 981 aa27.33■■□□□ 1.97
UPF3A-201ENST00000351487 APBB1O00213 710 aa27.32■■□□□ 1.96
UPF3A-201ENST00000351487 LMO7Q8WWI1 1683 aa27.32■■□□□ 1.96
UPF3A-201ENST00000351487 L1TD1Q5T7N2 865 aaKnown RBP27.32■■□□□ 1.96
UPF3A-201ENST00000351487 DNAJC5Q9H3Z4 198 aa27.32■■□□□ 1.96
UPF3A-201ENST00000351487 C14orf37Q86TY3 774 aa27.31■■□□□ 1.96
UPF3A-201ENST00000351487 SALL3Q9BXA9 1300 aa27.3■■□□□ 1.96
UPF3A-201ENST00000351487 TRAK2O60296 914 aa27.3■■□□□ 1.96
UPF3A-201ENST00000351487 PDE1AP54750 535 aa27.3■■□□□ 1.96
UPF3A-201ENST00000351487 TNPO1Q92973 898 aaKnown RBP27.3■■□□□ 1.96
UPF3A-201ENST00000351487 RGPD2P0DJD1 1756 aa27.29■■□□□ 1.96
UPF3A-201ENST00000351487 USHBP1Q8N6Y0 703 aa27.29■■□□□ 1.96
UPF3A-201ENST00000351487 HSP90AA1P07900 732 aaKnown RBP27.28■■□□□ 1.96
UPF3A-201ENST00000351487 KCNH5Q8NCM2 988 aa27.28■■□□□ 1.96
UPF3A-201ENST00000351487 ATP8B2P98198 1209 aa27.28■■□□□ 1.96
UPF3A-201ENST00000351487 IBTKQ9P2D0 1353 aaPredicted RBP27.27■■□□□ 1.96
UPF3A-201ENST00000351487 SETD1BQ9UPS6 1966 aaKnown RBP27.27■■□□□ 1.96
UPF3A-201ENST00000351487 REC8O95072 547 aa27.26■■□□□ 1.96
UPF3A-201ENST00000351487 GBP4Q96PP9 640 aa27.26■■□□□ 1.96
UPF3A-201ENST00000351487 FSD2A1L4K1 749 aa27.26■■□□□ 1.95
UPF3A-201ENST00000351487 NBPF6Q5VWK0 638 aa27.26■■□□□ 1.95
UPF3A-201ENST00000351487 NECTIN2Q92692 538 aa27.26■■□□□ 1.95
UPF3A-201ENST00000351487 NBPF4Q96M43 638 aa27.26■■□□□ 1.95
UPF3A-201ENST00000351487 ADAMTSL3P82987 1691 aa27.26■■□□□ 1.95
UPF3A-201ENST00000351487 LRRCC1Q9C099 1032 aa27.25■■□□□ 1.95
UPF3A-201ENST00000351487 EXOC6BQ9Y2D4 811 aa27.25■■□□□ 1.95
UPF3A-201ENST00000351487 HDGFL1Q5TGJ6 251 aa27.25■■□□□ 1.95
UPF3A-201ENST00000351487 SLIT3O75094 1523 aa27.25■■□□□ 1.95
UPF3A-201ENST00000351487 NCAPD2Q15021 1401 aa27.25■■□□□ 1.95
UPF3A-201ENST00000351487 PNMA6EA0A0J9YXQ4 647 aa27.24■■□□□ 1.95
UPF3A-201ENST00000351487 HOXB7P09629 217 aa27.24■■□□□ 1.95
UPF3A-201ENST00000351487 ERC2O15083 957 aa27.23■■□□□ 1.95
UPF3A-201ENST00000351487 PSME1Q06323 249 aa27.23■■□□□ 1.95
UPF3A-201ENST00000351487 ESCO1Q5FWF5 840 aa27.22■■□□□ 1.95
UPF3A-201ENST00000351487 USP44Q9H0E7 712 aa27.22■■□□□ 1.95
UPF3A-201ENST00000351487 CAMTA1Q9Y6Y1 1673 aa27.21■■□□□ 1.95
UPF3A-201ENST00000351487 PTMSP20962 102 aa27.21■■□□□ 1.95
UPF3A-201ENST00000351487 LRRFIP2Q9Y608 721 aaKnown RBP27.21■■□□□ 1.95
UPF3A-201ENST00000351487 EIF4A1P60842 406 aaKnown RBP27.21■■□□□ 1.95
UPF3A-201ENST00000351487 CLEC17AQ6ZS10 378 aa27.21■■□□□ 1.95
UPF3A-201ENST00000351487 CHMP4AQ9BY43 222 aa27.2■■□□□ 1.95
UPF3A-201ENST00000351487 GOLGA6L3A6NEY3 463 aa27.2■■□□□ 1.94
UPF3A-201ENST00000351487 MX1P20591 662 aa27.2■■□□□ 1.94
UPF3A-201ENST00000351487 RBM33Q96EV2 1170 aaKnown RBP27.2■■□□□ 1.94
UPF3A-201ENST00000351487 UBTFL1P0CB47 393 aaPredicted RBP27.19■■□□□ 1.94
UPF3A-201ENST00000351487 TRHP20396 242 aaPredicted RBP27.19■■□□□ 1.94
UPF3A-201ENST00000351487 FOXD4L1Q9NU39 408 aa27.19■■□□□ 1.94
UPF3A-201ENST00000351487 OVOS2A0A0G2JMS6 1433 aa27.19■■□□□ 1.94
UPF3A-201ENST00000351487 NPHP4O75161 1426 aaPredicted RBP27.19■■□□□ 1.94
UPF3A-201ENST00000351487 STAP2Q9UGK3 403 aa27.18■■□□□ 1.94
UPF3A-201ENST00000351487 PHAXQ9H814 394 aaKnown RBP27.18■■□□□ 1.94
UPF3A-201ENST00000351487 TRPM3Q9HCF6 1732 aaPredicted RBP27.18■■□□□ 1.94
UPF3A-201ENST00000351487 AKAP4Q5JQC9 854 aa27.17■■□□□ 1.94
UPF3A-201ENST00000351487 SRCIN1Q9C0H9 1055 aa27.17■■□□□ 1.94
UPF3A-201ENST00000351487 GZF1Q9H116 711 aaPredicted RBP27.17■■□□□ 1.94
UPF3A-201ENST00000351487 LGR6Q9HBX8 967 aa27.17■■□□□ 1.94
UPF3A-201ENST00000351487 RTN4Q9NQC3 1192 aaKnown RBP27.17■■□□□ 1.94
UPF3A-201ENST00000351487 AOX1Q06278 1338 aa27.17■■□□□ 1.94
UPF3A-201ENST00000351487 SSH3Q8TE77 659 aa27.17■■□□□ 1.94
UPF3A-201ENST00000351487 ST18O60284 1047 aa27.16■■□□□ 1.94
UPF3A-201ENST00000351487 SKOR2Q2VWA4 1001 aaPredicted RBP27.15■■□□□ 1.94
UPF3A-201ENST00000351487 ISY1Q9ULR0 285 aaKnown RBP27.15■■□□□ 1.94
UPF3A-201ENST00000351487 PLEKHO1Q53GL0 409 aaPredicted RBP27.14■■□□□ 1.94
UPF3A-201ENST00000351487 ARHGEF25Q86VW2 580 aa27.14■■□□□ 1.94
UPF3A-201ENST00000351487 LMTK3Q96Q04 1460 aa27.14■■□□□ 1.94
UPF3A-201ENST00000351487 AMOTQ4VCS5 1084 aa27.14■■□□□ 1.94
UPF3A-201ENST00000351487 POLA2Q14181 598 aa27.13■■□□□ 1.93
UPF3A-201ENST00000351487 ZNF530Q6P9A1 599 aaPredicted RBP27.13■■□□□ 1.93
UPF3A-201ENST00000351487 PXDNQ92626 1479 aa27.13■■□□□ 1.93
UPF3A-201ENST00000351487 SSFA2P28290 1259 aa27.13■■□□□ 1.93
UPF3A-201ENST00000351487 LRRC59Q96AG4 307 aaKnown RBP27.13■■□□□ 1.93
UPF3A-201ENST00000351487 ESYT1Q9BSJ8 1104 aa27.13■■□□□ 1.93
UPF3A-201ENST00000351487 AK9Q5TCS8 1911 aa27.13■■□□□ 1.93
UPF3A-201ENST00000351487 KIF1AQ12756 1690 aa27.12■■□□□ 1.93
UPF3A-201ENST00000351487 GCP02774 474 aa27.12■■□□□ 1.93
UPF3A-201ENST00000351487 XRCC6P12956 609 aaKnown RBP eCLIP27.12■■□□□ 1.93
UPF3A-201ENST00000351487 TSHZ3Q63HK5 1081 aa27.12■■□□□ 1.93
UPF3A-201ENST00000351487 SIPA1L3O60292 1781 aaPredicted RBP27.12■■□□□ 1.93
UPF3A-201ENST00000351487 TEFQ10587 303 aa27.12■■□□□ 1.93
UPF3A-201ENST00000351487 CHPF2Q9P2E5 772 aa27.12■■□□□ 1.93
UPF3A-201ENST00000351487 RAB11FIP3O75154 756 aa27.11■■□□□ 1.93
UPF3A-201ENST00000351487 ADAMTS7Q9UKP4 1686 aa27.1■■□□□ 1.93
UPF3A-201ENST00000351487 EIF2S2P20042 333 aaKnown RBP27.1■■□□□ 1.93
UPF3A-201ENST00000351487 NUCB2P80303 420 aa27.1■■□□□ 1.93
UPF3A-201ENST00000351487 DNAAF4Q8WXU2 420 aa27.1■■□□□ 1.93
UPF3A-201ENST00000351487 CWC22Q9HCG8 908 aaKnown RBP27.1■■□□□ 1.93
UPF3A-201ENST00000351487 CYP2E1P05181 493 aaPredicted RBP27.09■■□□□ 1.93
UPF3A-201ENST00000351487 BEND3Q5T5X7 828 aa27.09■■□□□ 1.93
UPF3A-201ENST00000351487 ORAI2Q96SN7 254 aa27.09■■□□□ 1.93
UPF3A-201ENST00000351487 BTBD11A6QL63 1104 aa27.09■■□□□ 1.93
UPF3A-201ENST00000351487 KCNQ3O43525 872 aa27.09■■□□□ 1.93
UPF3A-201ENST00000351487 ZBTB7CA1YPR0 619 aa27.08■■□□□ 1.93
UPF3A-201ENST00000351487 CHMLP26374 656 aa27.08■■□□□ 1.93
UPF3A-201ENST00000351487 MST1RQ04912 1400 aa27.08■■□□□ 1.93
UPF3A-201ENST00000351487 PPP1R42Q7Z4L9 355 aa27.08■■□□□ 1.93
UPF3A-201ENST00000351487 RNMTO43148 476 aaKnown RBP27.08■■□□□ 1.92
UPF3A-201ENST00000351487 MRE11P49959 708 aa27.08■■□□□ 1.92
UPF3A-201ENST00000351487 GOLGA6L22H0YM25 854 aa27.07■■□□□ 1.92
UPF3A-201ENST00000351487 FAM43AQ8N2R8 423 aa27.07■■□□□ 1.92
UPF3A-201ENST00000351487 ADCY9O60503 1353 aa27.07■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms