RNA–Protein interactions for RNA: ENST00000349379.5

SNX3-202, Transcript of sorting nexin 3, humanhuman

TSL 2 BASIC

Gene SNX3, Length 890 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3-202ENST00000349379 AKT1S1Q96B36 256 aa29.51■■■□□ 2.31
SNX3-202ENST00000349379 ATG3Q9NT62 314 aa29.51■■■□□ 2.31
SNX3-202ENST00000349379 RNMTO43148 476 aaKnown RBP29.5■■■□□ 2.31
SNX3-202ENST00000349379 LGR6Q9HBX8 967 aa29.5■■■□□ 2.31
SNX3-202ENST00000349379 C4BP0C0L5 1744 aa29.5■■■□□ 2.31
SNX3-202ENST00000349379 MAP3K5Q99683 1374 aa29.5■■■□□ 2.31
SNX3-202ENST00000349379 CICQ96RK0 1608 aaPredicted RBP29.49■■■□□ 2.31
SNX3-202ENST00000349379 COL5A3P25940 1745 aaPredicted RBP29.48■■■□□ 2.31
SNX3-202ENST00000349379 NFATC2IPQ8NCF5 419 aa29.47■■■□□ 2.31
SNX3-202ENST00000349379 UBR3Q6ZT12 1888 aa29.46■■■□□ 2.31
SNX3-202ENST00000349379 LOC102724428A0A0B4J2F2 783 aa29.46■■■□□ 2.31
SNX3-202ENST00000349379 SIK1P57059 783 aa29.46■■■□□ 2.31
SNX3-202ENST00000349379 SLC52A2Q9HAB3 445 aa29.46■■■□□ 2.31
SNX3-202ENST00000349379 UBR2Q8IWV8 1755 aa29.46■■■□□ 2.31
SNX3-202ENST00000349379 GNAT3A8MTJ3 354 aa29.45■■■□□ 2.31
SNX3-202ENST00000349379 PLEKHF1Q96S99 279 aa29.44■■■□□ 2.3
SNX3-202ENST00000349379 PDGFDQ9GZP0 370 aaPredicted RBP29.44■■■□□ 2.3
SNX3-202ENST00000349379 CEMIPQ8WUJ3 1361 aa29.43■■■□□ 2.3
SNX3-202ENST00000349379 HMGB2P26583 209 aaKnown RBP29.43■■■□□ 2.3
SNX3-202ENST00000349379 TJP1Q07157 1748 aa29.42■■■□□ 2.3
SNX3-202ENST00000349379 COL24A1Q17RW2 1714 aa29.42■■■□□ 2.3
SNX3-202ENST00000349379 IL17REQ8NFR9 667 aa29.42■■■□□ 2.3
SNX3-202ENST00000349379 SLC4A9Q96Q91 983 aa29.4■■■□□ 2.3
SNX3-202ENST00000349379 ITPK1Q13572 414 aa29.39■■■□□ 2.3
SNX3-202ENST00000349379 MYH14Q7Z406 1995 aaKnown RBP29.38■■■□□ 2.29
SNX3-202ENST00000349379 KCPQ6ZWJ8 1503 aa29.38■■■□□ 2.29
SNX3-202ENST00000349379 PNPLA7Q6ZV29 1317 aa29.38■■■□□ 2.29
SNX3-202ENST00000349379 SRCAPQ6ZRS2 3230 aa29.37■■■□□ 2.29
SNX3-202ENST00000349379 ATP6V1AP38606 617 aa29.37■■■□□ 2.29
SNX3-202ENST00000349379 LINC00116Q8NCU8 138 aa29.36■■■□□ 2.29
SNX3-202ENST00000349379 PNNQ9H307 717 aaKnown RBP29.36■■■□□ 2.29
SNX3-202ENST00000349379 TFCP2L1Q9NZI6 479 aa29.35■■■□□ 2.29
SNX3-202ENST00000349379 HTATSF1O43719 755 aaKnown RBP29.34■■■□□ 2.29
SNX3-202ENST00000349379 RBM42Q9BTD8 480 aaKnown RBP29.34■■■□□ 2.29
SNX3-202ENST00000349379 NEFMP07197 916 aa29.33■■■□□ 2.29
SNX3-202ENST00000349379 SPON1Q9HCB6 807 aa29.32■■■□□ 2.28
SNX3-202ENST00000349379 TEFQ10587 303 aa29.31■■■□□ 2.28
SNX3-202ENST00000349379 PTCD1O75127 700 aaKnown RBP29.3■■■□□ 2.28
SNX3-202ENST00000349379 ZBTB7AO95365 584 aa29.3■■■□□ 2.28
SNX3-202ENST00000349379 SLC39A6Q13433 755 aa29.3■■■□□ 2.28
SNX3-202ENST00000349379 NFE2L2Q16236 605 aa29.3■■■□□ 2.28
SNX3-202ENST00000349379 MTFR1LQ9H019 292 aa29.3■■■□□ 2.28
SNX3-202ENST00000349379 MAPK8IP3Q9UPT6 1336 aa29.29■■■□□ 2.28
SNX3-202ENST00000349379 SLC16A10Q8TF71 515 aa29.29■■■□□ 2.28
SNX3-202ENST00000349379 RTF1Q92541 710 aaKnown RBP29.29■■■□□ 2.28
SNX3-202ENST00000349379 AMIGO3Q86WK7 504 aa29.28■■■□□ 2.28
SNX3-202ENST00000349379 AK7Q96M32 723 aa29.28■■■□□ 2.28
SNX3-202ENST00000349379 CNTNAP4Q9C0A0 1308 aa29.27■■■□□ 2.28
SNX3-202ENST00000349379 PTGER2P43116 358 aa29.27■■■□□ 2.28
SNX3-202ENST00000349379 WDR43Q15061 677 aaKnown RBP eCLIP29.27■■■□□ 2.28
SNX3-202ENST00000349379 MCM10Q7L590 875 aa29.27■■■□□ 2.28
SNX3-202ENST00000349379 COL23A1Q86Y22 540 aaPredicted RBP29.27■■■□□ 2.28
SNX3-202ENST00000349379 KDM3BQ7LBC6 1761 aa29.26■■■□□ 2.28
SNX3-202ENST00000349379 ANP32CO43423 234 aa29.26■■■□□ 2.27
SNX3-202ENST00000349379 DCTN1Q14203 1278 aa29.26■■■□□ 2.27
SNX3-202ENST00000349379 RC3H1Q5TC82 1133 aaKnown RBP29.26■■■□□ 2.27
SNX3-202ENST00000349379 FLAD1Q8NFF5 587 aa29.26■■■□□ 2.27
SNX3-202ENST00000349379 SGIP1Q9BQI5 828 aa29.26■■■□□ 2.27
SNX3-202ENST00000349379 ADAMTS8Q9UP79 889 aa29.26■■■□□ 2.27
SNX3-202ENST00000349379 C4AP0C0L4 1744 aa29.25■■■□□ 2.27
SNX3-202ENST00000349379 CCDC184Q52MB2 194 aa29.24■■■□□ 2.27
SNX3-202ENST00000349379 ZNF790Q6PG37 636 aa29.24■■■□□ 2.27
SNX3-202ENST00000349379 SSFA2P28290 1259 aa29.23■■■□□ 2.27
SNX3-202ENST00000349379 VSIG10Q8N0Z9 540 aa29.23■■■□□ 2.27
SNX3-202ENST00000349379 ATF5Q9Y2D1 282 aaPredicted RBP29.23■■■□□ 2.27
SNX3-202ENST00000349379 GNPATO15228 680 aa29.22■■■□□ 2.27
SNX3-202ENST00000349379 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP29.21■■■□□ 2.27
SNX3-202ENST00000349379 TTC5Q8N0Z6 440 aa29.21■■■□□ 2.27
SNX3-202ENST00000349379 RUNDC1Q96C34 613 aa29.21■■■□□ 2.27
SNX3-202ENST00000349379 BTBD11A6QL63 1104 aa29.2■■■□□ 2.26
SNX3-202ENST00000349379 TMPOP42166 694 aaKnown RBP29.2■■■□□ 2.26
SNX3-202ENST00000349379 DNAJC10Q8IXB1 793 aa29.2■■■□□ 2.26
SNX3-202ENST00000349379 CCDC146Q8IYE0 955 aa29.2■■■□□ 2.26
SNX3-202ENST00000349379 HEG1Q9ULI3 1381 aa29.19■■■□□ 2.26
SNX3-202ENST00000349379 ZNF496Q96IT1 587 aaPredicted RBP29.19■■■□□ 2.26
SNX3-202ENST00000349379 CRKLP46109 303 aaKnown RBP29.18■■■□□ 2.26
SNX3-202ENST00000349379 SMIM5Q71RC9 77 aa29.18■■■□□ 2.26
SNX3-202ENST00000349379 KCNQ3O43525 872 aa29.17■■■□□ 2.26
SNX3-202ENST00000349379 RPS6KA4O75676 772 aa29.17■■■□□ 2.26
SNX3-202ENST00000349379 PHF14O94880 888 aa29.16■■■□□ 2.26
SNX3-202ENST00000349379 CYP19A1P11511 503 aaPredicted RBP29.16■■■□□ 2.26
SNX3-202ENST00000349379 RIPK4P57078 832 aa29.16■■■□□ 2.26
SNX3-202ENST00000349379 TAF7Q15545 349 aaPredicted RBP29.16■■■□□ 2.26
SNX3-202ENST00000349379 RTCBQ9Y3I0 505 aaKnown RBP29.16■■■□□ 2.26
SNX3-202ENST00000349379 INTS5Q6P9B9 1019 aaKnown RBP29.15■■■□□ 2.26
SNX3-202ENST00000349379 LAMB4A4D0S4 1761 aa29.14■■■□□ 2.26
SNX3-202ENST00000349379 ADRA2BP18089 450 aa29.14■■■□□ 2.26
SNX3-202ENST00000349379 FMNL2Q96PY5 1086 aa29.14■■■□□ 2.26
SNX3-202ENST00000349379 THUMPD2Q9BTF0 503 aaKnown RBP29.14■■■□□ 2.26
SNX3-202ENST00000349379 MSH5O43196 834 aa29.13■■■□□ 2.25
SNX3-202ENST00000349379 LMOD3Q0VAK6 560 aa29.12■■■□□ 2.25
SNX3-202ENST00000349379 PNISRQ8TF01 805 aaKnown RBP29.12■■■□□ 2.25
SNX3-202ENST00000349379 CCDC87Q9NVE4 849 aa29.12■■■□□ 2.25
SNX3-202ENST00000349379 PPP1R1BQ9UD71 204 aaPredicted RBP29.11■■■□□ 2.25
SNX3-202ENST00000349379 RRP7AQ9Y3A4 280 aaKnown RBP29.11■■■□□ 2.25
SNX3-202ENST00000349379 TRAPPC3LQ5T215 181 aa29.1■■■□□ 2.25
SNX3-202ENST00000349379 MRS2Q9HD23 443 aa29.1■■■□□ 2.25
SNX3-202ENST00000349379 ARHGEF1Q92888 912 aaKnown RBP29.09■■■□□ 2.25
SNX3-202ENST00000349379 TEX13AQ9BXU3 409 aaPredicted RBP29.09■■■□□ 2.25
SNX3-202ENST00000349379 TRIM35Q9UPQ4 493 aa29.09■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms