RNA–Protein interactions for RNA: ENST00000347037.9

SYNE1-202, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 3,798 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-202ENST00000347037 KIAA2012Q0VF49 1180 aa13.46□□□□□ -0.25
SYNE1-202ENST00000347037 SASS6Q6UVJ0 657 aa13.46□□□□□ -0.25
SYNE1-202ENST00000347037 PLCB2Q00722 1185 aa13.46□□□□□ -0.26
SYNE1-202ENST00000347037 ESYT1Q9BSJ8 1104 aa13.46□□□□□ -0.26
SYNE1-202ENST00000347037 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.46□□□□□ -0.26
SYNE1-202ENST00000347037 G2E3Q7L622 706 aa13.45□□□□□ -0.26
SYNE1-202ENST00000347037 PTPRCP08575 1304 aa13.45□□□□□ -0.26
SYNE1-202ENST00000347037 MCM2P49736 904 aa13.45□□□□□ -0.26
SYNE1-202ENST00000347037 NECTIN2Q92692 538 aa13.45□□□□□ -0.26
SYNE1-202ENST00000347037 DYNC1I1O14576 645 aa13.44□□□□□ -0.26
SYNE1-202ENST00000347037 RGS12O14924 1447 aa13.44□□□□□ -0.26
SYNE1-202ENST00000347037 CHL1O00533 1208 aa13.44□□□□□ -0.26
SYNE1-202ENST00000347037 TXNDC2Q86VQ3 553 aa13.44□□□□□ -0.26
SYNE1-202ENST00000347037 PPP6R1Q9UPN7 881 aa13.44□□□□□ -0.26
SYNE1-202ENST00000347037 DLG5Q8TDM6 1919 aa13.43□□□□□ -0.26
SYNE1-202ENST00000347037 FER1L4A9Z1Z3 1794 aa13.43□□□□□ -0.26
SYNE1-202ENST00000347037 CDK12Q9NYV4 1490 aaPredicted RBP13.43□□□□□ -0.26
SYNE1-202ENST00000347037 WASLO00401 505 aaPredicted RBP13.43□□□□□ -0.26
SYNE1-202ENST00000347037 EIF4A2Q14240 407 aaKnown RBP13.43□□□□□ -0.26
SYNE1-202ENST00000347037 USP48Q86UV5 1035 aa13.43□□□□□ -0.26
SYNE1-202ENST00000347037 NUDT16Q96DE0 195 aaKnown RBP13.43□□□□□ -0.26
SYNE1-202ENST00000347037 LRRCC1Q9C099 1032 aa13.43□□□□□ -0.26
SYNE1-202ENST00000347037 USP25Q9UHP3 1055 aa13.43□□□□□ -0.26
SYNE1-202ENST00000347037 ALKQ9UM73 1620 aa13.43□□□□□ -0.26
SYNE1-202ENST00000347037 PHF14O94880 888 aa13.43□□□□□ -0.26
SYNE1-202ENST00000347037 MX1P20591 662 aa13.43□□□□□ -0.26
SYNE1-202ENST00000347037 JARID2Q92833 1246 aaPredicted RBP13.43□□□□□ -0.26
SYNE1-202ENST00000347037 ATP7BP35670 1465 aa13.43□□□□□ -0.26
SYNE1-202ENST00000347037 EDC4Q6P2E9 1401 aaKnown RBP13.43□□□□□ -0.26
SYNE1-202ENST00000347037 NUTM2FA1L443 756 aa13.43□□□□□ -0.26
SYNE1-202ENST00000347037 GNAI2P04899 355 aa13.43□□□□□ -0.26
SYNE1-202ENST00000347037 PRDM10Q9NQV6 1147 aa13.43□□□□□ -0.26
SYNE1-202ENST00000347037 TSPYL4Q9UJ04 414 aa13.43□□□□□ -0.26
SYNE1-202ENST00000347037 LARP6Q9BRS8 491 aaKnown RBP13.42□□□□□ -0.26
SYNE1-202ENST00000347037 MAP4K4O95819 1239 aaPredicted RBP13.42□□□□□ -0.26
SYNE1-202ENST00000347037 TSC1Q92574 1164 aa13.42□□□□□ -0.26
SYNE1-202ENST00000347037 C17orf53Q8N3J3 647 aaPredicted RBP13.42□□□□□ -0.26
SYNE1-202ENST00000347037 A2ML1A8K2U0 1454 aa13.42□□□□□ -0.26
SYNE1-202ENST00000347037 CHMLP26374 656 aa13.41□□□□□ -0.26
SYNE1-202ENST00000347037 CCT4P50991 539 aaKnown RBP13.41□□□□□ -0.26
SYNE1-202ENST00000347037 CUL4AQ13619 759 aa13.41□□□□□ -0.26
SYNE1-202ENST00000347037 RTF1Q92541 710 aaKnown RBP13.41□□□□□ -0.26
SYNE1-202ENST00000347037 OSBPL3Q9H4L5 887 aa13.41□□□□□ -0.26
SYNE1-202ENST00000347037 CPSF1Q10570 1443 aaKnown RBP13.41□□□□□ -0.26
SYNE1-202ENST00000347037 FOXO3O43524 673 aa13.41□□□□□ -0.26
SYNE1-202ENST00000347037 TTC12Q9H892 705 aaPredicted RBP13.41□□□□□ -0.26
SYNE1-202ENST00000347037 IL1RAPL2Q9NP60 686 aa13.4□□□□□ -0.26
SYNE1-202ENST00000347037 PNMA6EA0A0J9YXQ4 647 aa13.4□□□□□ -0.26
SYNE1-202ENST00000347037 FKBP5Q13451 457 aaPredicted RBP13.4□□□□□ -0.26
SYNE1-202ENST00000347037 UNC5CLQ8IV45 518 aa13.4□□□□□ -0.26
SYNE1-202ENST00000347037 STK31Q9BXU1 1019 aa13.4□□□□□ -0.26
SYNE1-202ENST00000347037 WDR33Q9C0J8 1336 aaKnown RBP13.4□□□□□ -0.26
SYNE1-202ENST00000347037 DTNBO60941 627 aa13.4□□□□□ -0.27
SYNE1-202ENST00000347037 HSP90AB2PQ58FF8 381 aa13.4□□□□□ -0.27
SYNE1-202ENST00000347037 CNPY2Q9Y2B0 182 aa13.4□□□□□ -0.27
SYNE1-202ENST00000347037 AATKQ6ZMQ8 1374 aa13.39□□□□□ -0.27
SYNE1-202ENST00000347037 FAM177BA6PVY3 158 aa13.39□□□□□ -0.27
SYNE1-202ENST00000347037 HCLS1P14317 486 aaPredicted RBP13.39□□□□□ -0.27
SYNE1-202ENST00000347037 MTERF4Q7Z6M4 381 aaKnown RBP13.39□□□□□ -0.27
SYNE1-202ENST00000347037 INTS4Q96HW7 963 aaKnown RBP13.39□□□□□ -0.27
SYNE1-202ENST00000347037 CCDC61Q9Y6R9 512 aa13.39□□□□□ -0.27
SYNE1-202ENST00000347037 ADCY5O95622 1261 aa13.39□□□□□ -0.27
SYNE1-202ENST00000347037 SRCIN1Q9C0H9 1055 aa13.38□□□□□ -0.27
SYNE1-202ENST00000347037 KIAA0232Q92628 1395 aa13.38□□□□□ -0.27
SYNE1-202ENST00000347037 FIBPO43427 364 aa13.38□□□□□ -0.27
SYNE1-202ENST00000347037 NUTM1Q86Y26 1132 aa13.38□□□□□ -0.27
SYNE1-202ENST00000347037 CPS1P31327 1500 aa13.38□□□□□ -0.27
SYNE1-202ENST00000347037 ANAPC15P60006 121 aa13.37□□□□□ -0.27
SYNE1-202ENST00000347037 NOLC1Q14978 699 aaKnown RBP eCLIP13.37□□□□□ -0.27
SYNE1-202ENST00000347037 LRRFIP2Q9Y608 721 aaKnown RBP13.37□□□□□ -0.27
SYNE1-202ENST00000347037 MLECQ14165 292 aa13.36□□□□□ -0.27
SYNE1-202ENST00000347037 CCDC183Q5T5S1 534 aa13.36□□□□□ -0.27
SYNE1-202ENST00000347037 IL25Q9H293 177 aa13.36□□□□□ -0.27
SYNE1-202ENST00000347037 ADAMTSL3P82987 1691 aa13.36□□□□□ -0.27
SYNE1-202ENST00000347037 FAM184AQ8NB25 1140 aa13.36□□□□□ -0.27
SYNE1-202ENST00000347037 MYRIPQ8NFW9 859 aa13.36□□□□□ -0.27
SYNE1-202ENST00000347037 GNAI3P08754 354 aa13.35□□□□□ -0.27
SYNE1-202ENST00000347037 FLIIQ13045 1269 aa13.35□□□□□ -0.27
SYNE1-202ENST00000347037 PIBF1Q8WXW3 757 aa13.35□□□□□ -0.27
SYNE1-202ENST00000347037 MTHFSDQ2M296 383 aaKnown RBP13.34□□□□□ -0.27
SYNE1-202ENST00000347037 ATP8B2P98198 1209 aa13.34□□□□□ -0.27
SYNE1-202ENST00000347037 GIMAP6Q6P9H5 292 aa13.34□□□□□ -0.27
SYNE1-202ENST00000347037 DNAJC5Q9H3Z4 198 aa13.34□□□□□ -0.27
SYNE1-202ENST00000347037 SALL3Q9BXA9 1300 aa13.34□□□□□ -0.27
SYNE1-202ENST00000347037 SPC24Q8NBT2 197 aa13.34□□□□□ -0.27
SYNE1-202ENST00000347037 SMC3Q9UQE7 1217 aa13.34□□□□□ -0.27
SYNE1-202ENST00000347037 CPA1P15085 419 aa13.33□□□□□ -0.27
SYNE1-202ENST00000347037 UVSSAQ2YD98 709 aa13.33□□□□□ -0.27
SYNE1-202ENST00000347037 PRDM4Q9UKN5 801 aa13.33□□□□□ -0.27
SYNE1-202ENST00000347037 ZSCAN22P10073 491 aaPredicted RBP13.33□□□□□ -0.28
SYNE1-202ENST00000347037 CCDC94Q9BW85 323 aaPredicted RBP13.33□□□□□ -0.28
SYNE1-202ENST00000347037 CHMP3Q9Y3E7 222 aa13.33□□□□□ -0.28
SYNE1-202ENST00000347037 SURF6O75683 361 aaKnown RBP13.33□□□□□ -0.28
SYNE1-202ENST00000347037 ZHX1Q9UKY1 873 aaPredicted RBP13.33□□□□□ -0.28
SYNE1-202ENST00000347037 STX6O43752 255 aa13.32□□□□□ -0.28
SYNE1-202ENST00000347037 UBTFL1P0CB47 393 aaPredicted RBP13.32□□□□□ -0.28
SYNE1-202ENST00000347037 HSPA4P34932 840 aa13.32□□□□□ -0.28
SYNE1-202ENST00000347037 AK2P54819 239 aa13.32□□□□□ -0.28
SYNE1-202ENST00000347037 HMGN5P82970 282 aaKnown RBP13.32□□□□□ -0.28
SYNE1-202ENST00000347037 CBX1P83916 185 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms