RNA–Protein interactions for RNA: ENST00000343483.6

HOXA9-201, Transcript of homeobox A9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA9, Length 2,060 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9-201ENST00000343483 CCDC30Q5VVM6 783 aa23.4■■□□□ 1.34
HOXA9-201ENST00000343483 NLRP2Q9NX02 1062 aa23.4■■□□□ 1.34
HOXA9-201ENST00000343483 TEFQ10587 303 aa23.4■■□□□ 1.34
HOXA9-201ENST00000343483 VIRMAQ69YN4 1812 aaKnown RBP23.4■■□□□ 1.34
HOXA9-201ENST00000343483 CHRNA2Q15822 529 aa23.39■■□□□ 1.33
HOXA9-201ENST00000343483 CAMTA1Q9Y6Y1 1673 aa23.39■■□□□ 1.33
HOXA9-201ENST00000343483 RGPD5Q99666 1765 aa23.38■■□□□ 1.33
HOXA9-201ENST00000343483 SOS1Q07889 1333 aaPredicted RBP23.38■■□□□ 1.33
HOXA9-201ENST00000343483 JCADQ9P266 1359 aa23.38■■□□□ 1.33
HOXA9-201ENST00000343483 CSB-PGBD3P0DP91 1061 aa23.37■■□□□ 1.33
HOXA9-201ENST00000343483 LMO7Q8WWI1 1683 aa23.37■■□□□ 1.33
HOXA9-201ENST00000343483 NUTM2BA6NNL0 878 aaPredicted RBP23.36■■□□□ 1.33
HOXA9-201ENST00000343483 NUTM2EB1AL46 878 aaPredicted RBP23.36■■□□□ 1.33
HOXA9-201ENST00000343483 F6X3S4 739 aa23.36■■□□□ 1.33
HOXA9-201ENST00000343483 SLC4A10Q6U841 1118 aa23.36■■□□□ 1.33
HOXA9-201ENST00000343483 NUTM2AQ8IVF1 878 aaPredicted RBP23.36■■□□□ 1.33
HOXA9-201ENST00000343483 SIRT2Q8IXJ6 389 aa23.36■■□□□ 1.33
HOXA9-201ENST00000343483 RAPGEF4Q8WZA2 1011 aa23.36■■□□□ 1.33
HOXA9-201ENST00000343483 RNMTO43148 476 aaKnown RBP23.36■■□□□ 1.33
HOXA9-201ENST00000343483 NUCB1Q02818 461 aa23.36■■□□□ 1.33
HOXA9-201ENST00000343483 BTBD11A6QL63 1104 aa23.35■■□□□ 1.33
HOXA9-201ENST00000343483 FLIIQ13045 1269 aa23.34■■□□□ 1.33
HOXA9-201ENST00000343483 HDGFL1Q5TGJ6 251 aa23.34■■□□□ 1.33
HOXA9-201ENST00000343483 EIF4A1P60842 406 aaKnown RBP23.34■■□□□ 1.33
HOXA9-201ENST00000343483 GCC1Q96CN9 775 aa23.34■■□□□ 1.33
HOXA9-201ENST00000343483 FKBP5Q13451 457 aaPredicted RBP23.33■■□□□ 1.33
HOXA9-201ENST00000343483 LNPKQ9C0E8 428 aa23.33■■□□□ 1.33
HOXA9-201ENST00000343483 FAM208AQ9UK61 1670 aaKnown RBP23.33■■□□□ 1.32
HOXA9-201ENST00000343483 CHD1LQ86WJ1 897 aa23.32■■□□□ 1.32
HOXA9-201ENST00000343483 LRP6O75581 1613 aa23.32■■□□□ 1.32
HOXA9-201ENST00000343483 KCNQ3O43525 872 aa23.32■■□□□ 1.32
HOXA9-201ENST00000343483 MEIS3Q99687 375 aa23.32■■□□□ 1.32
HOXA9-201ENST00000343483 CCT4P50991 539 aaKnown RBP23.31■■□□□ 1.32
HOXA9-201ENST00000343483 DAXXQ9UER7 740 aaPredicted RBP23.31■■□□□ 1.32
HOXA9-201ENST00000343483 CPDO75976 1380 aa23.31■■□□□ 1.32
HOXA9-201ENST00000343483 TATP17735 454 aaPredicted RBP23.31■■□□□ 1.32
HOXA9-201ENST00000343483 ANKRD45Q5TZF3 282 aa23.31■■□□□ 1.32
HOXA9-201ENST00000343483 COL18A1P39060 1754 aa23.3■■□□□ 1.32
HOXA9-201ENST00000343483 EIF2S2P20042 333 aaKnown RBP23.3■■□□□ 1.32
HOXA9-201ENST00000343483 OVOS2A0A0G2JMS6 1433 aa23.3■■□□□ 1.32
HOXA9-201ENST00000343483 CRYBG1Q9Y4K1 1723 aa23.29■■□□□ 1.32
HOXA9-201ENST00000343483 RTL5Q5HYW3 569 aaPredicted RBP23.29■■□□□ 1.32
HOXA9-201ENST00000343483 ABCC6O95255 1503 aa23.28■■□□□ 1.32
HOXA9-201ENST00000343483 ATP10DQ9P241 1426 aa23.28■■□□□ 1.32
HOXA9-201ENST00000343483 SEC24BO95487 1268 aa23.28■■□□□ 1.32
HOXA9-201ENST00000343483 HOXB7P09629 217 aa23.28■■□□□ 1.32
HOXA9-201ENST00000343483 KDM3BQ7LBC6 1761 aa23.27■■□□□ 1.32
HOXA9-201ENST00000343483 MEGF6O75095 1541 aa23.27■■□□□ 1.32
HOXA9-201ENST00000343483 SLC4A3P48751 1232 aa23.27■■□□□ 1.32
HOXA9-201ENST00000343483 ANKRD44Q8N8A2 993 aa23.27■■□□□ 1.32
HOXA9-201ENST00000343483 PRDM11Q9NQV5 511 aa23.27■■□□□ 1.32
HOXA9-201ENST00000343483 SPG7Q9UQ90 795 aa23.27■■□□□ 1.32
HOXA9-201ENST00000343483 ADAMTS2O95450 1211 aa23.26■■□□□ 1.31
HOXA9-201ENST00000343483 CEP85Q6P2H3 762 aa23.26■■□□□ 1.31
HOXA9-201ENST00000343483 RPAP2Q8IXW5 612 aaPredicted RBP23.26■■□□□ 1.31
HOXA9-201ENST00000343483 PHAXQ9H814 394 aaKnown RBP23.25■■□□□ 1.31
HOXA9-201ENST00000343483 CHPF2Q9P2E5 772 aa23.24■■□□□ 1.31
HOXA9-201ENST00000343483 SPATA31A6Q5VVP1 1343 aa23.24■■□□□ 1.31
HOXA9-201ENST00000343483 CHMP4AQ9BY43 222 aa23.24■■□□□ 1.31
HOXA9-201ENST00000343483 PHKG2P15735 406 aa23.23■■□□□ 1.31
HOXA9-201ENST00000343483 DCTPP1Q9H773 170 aa23.23■■□□□ 1.31
HOXA9-201ENST00000343483 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.23■■□□□ 1.31
HOXA9-201ENST00000343483 COL22A1Q8NFW1 1626 aaPredicted RBP23.21■■□□□ 1.31
HOXA9-201ENST00000343483 IFNL2Q8IZJ0 200 aa23.21■■□□□ 1.31
HOXA9-201ENST00000343483 KDM6AO15550 1401 aaPredicted RBP23.21■■□□□ 1.31
HOXA9-201ENST00000343483 UPF2Q9HAU5 1272 aaKnown RBP23.2■■□□□ 1.3
HOXA9-201ENST00000343483 GIGYF1O75420 1035 aaPredicted RBP23.2■■□□□ 1.3
HOXA9-201ENST00000343483 GNAI2P04899 355 aa23.2■■□□□ 1.3
HOXA9-201ENST00000343483 MEX3CQ5U5Q3 659 aaKnown RBP23.2■■□□□ 1.3
HOXA9-201ENST00000343483 BCL11AQ9H165 835 aa23.2■■□□□ 1.3
HOXA9-201ENST00000343483 RGS17Q9UGC6 210 aaPredicted RBP23.2■■□□□ 1.3
HOXA9-201ENST00000343483 SLC52A2Q9HAB3 445 aa23.19■■□□□ 1.3
HOXA9-201ENST00000343483 ADAMTS7Q9UKP4 1686 aa23.19■■□□□ 1.3
HOXA9-201ENST00000343483 ANXA1P04083 346 aa23.18■■□□□ 1.3
HOXA9-201ENST00000343483 GNAI3P08754 354 aa23.18■■□□□ 1.3
HOXA9-201ENST00000343483 TOM1L2Q6ZVM7 507 aa23.18■■□□□ 1.3
HOXA9-201ENST00000343483 PXDNLA1KZ92 1463 aa23.18■■□□□ 1.3
HOXA9-201ENST00000343483 WDR17Q8IZU2 1322 aa23.18■■□□□ 1.3
HOXA9-201ENST00000343483 C8orf37Q96NL8 207 aa23.18■■□□□ 1.3
HOXA9-201ENST00000343483 CYP27B1O15528 508 aa23.17■■□□□ 1.3
HOXA9-201ENST00000343483 HMMRO75330 724 aa23.17■■□□□ 1.3
HOXA9-201ENST00000343483 DEKP35659 375 aaKnown RBP23.17■■□□□ 1.3
HOXA9-201ENST00000343483 DBF4Q9UBU7 674 aaPredicted RBP23.17■■□□□ 1.3
HOXA9-201ENST00000343483 CACNA1FO60840 1977 aa23.17■■□□□ 1.3
HOXA9-201ENST00000343483 PRAMEF22A3QJZ6 481 aa23.17■■□□□ 1.3
HOXA9-201ENST00000343483 NFATC2IPQ8NCF5 419 aa23.17■■□□□ 1.3
HOXA9-201ENST00000343483 PLEKHG2Q9H7P9 1386 aa23.16■■□□□ 1.3
HOXA9-201ENST00000343483 HEG1Q9ULI3 1381 aa23.16■■□□□ 1.3
HOXA9-201ENST00000343483 SLC39A6Q13433 755 aa23.16■■□□□ 1.3
HOXA9-201ENST00000343483 DCAF5Q96JK2 942 aa23.16■■□□□ 1.3
HOXA9-201ENST00000343483 SIPA1L3O60292 1781 aaPredicted RBP23.15■■□□□ 1.3
HOXA9-201ENST00000343483 APBB1O00213 710 aa23.15■■□□□ 1.3
HOXA9-201ENST00000343483 ZNF790Q6PG37 636 aa23.15■■□□□ 1.3
HOXA9-201ENST00000343483 USP35Q9P2H5 1018 aa23.15■■□□□ 1.3
HOXA9-201ENST00000343483 ABCA3Q99758 1704 aa23.15■■□□□ 1.3
HOXA9-201ENST00000343483 BMP2KLQ5H9B9 411 aa23.15■■□□□ 1.3
HOXA9-201ENST00000343483 COL5A2P05997 1499 aaPredicted RBP23.14■■□□□ 1.3
HOXA9-201ENST00000343483 PI4KAP2A4QPH2 592 aa23.14■■□□□ 1.29
HOXA9-201ENST00000343483 PI4KAP1Q8N8J0 262 aa23.14■■□□□ 1.29
HOXA9-201ENST00000343483 SRCIN1Q9C0H9 1055 aa23.13■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms