RNA–Protein interactions for RNA: ENST00000340424.4

SIRPB3P-201, Transcript of signal regulatory protein beta 3, pseudogene, humanhuman

BASIC

Gene SIRPB3P, Length 1,216 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIRPB3P-201ENST00000340424 TAF1LQ8IZX4 1826 aa17.95■□□□□ 0.46
SIRPB3P-201ENST00000340424 PTGER2P43116 358 aa17.94■□□□□ 0.46
SIRPB3P-201ENST00000340424 KCNQ4P56696 695 aa17.94■□□□□ 0.46
SIRPB3P-201ENST00000340424 AKAP4Q5JQC9 854 aa17.94■□□□□ 0.46
SIRPB3P-201ENST00000340424 PNPLA7Q6ZV29 1317 aa17.94■□□□□ 0.46
SIRPB3P-201ENST00000340424 TUBGCP6Q96RT7 1819 aa17.93■□□□□ 0.46
SIRPB3P-201ENST00000340424 ZNF831Q5JPB2 1677 aa17.93■□□□□ 0.46
SIRPB3P-201ENST00000340424 LOC102724428A0A0B4J2F2 783 aa17.93■□□□□ 0.46
SIRPB3P-201ENST00000340424 SIK1P57059 783 aa17.93■□□□□ 0.46
SIRPB3P-201ENST00000340424 CNGB1Q14028 1251 aaPredicted RBP17.93■□□□□ 0.46
SIRPB3P-201ENST00000340424 FLAD1Q8NFF5 587 aa17.93■□□□□ 0.46
SIRPB3P-201ENST00000340424 HMOX1P09601 288 aa17.92■□□□□ 0.46
SIRPB3P-201ENST00000340424 CABP4P57796 275 aa17.92■□□□□ 0.46
SIRPB3P-201ENST00000340424 ATF5Q9Y2D1 282 aaPredicted RBP17.92■□□□□ 0.46
SIRPB3P-201ENST00000340424 C4BP0C0L5 1744 aa17.92■□□□□ 0.46
SIRPB3P-201ENST00000340424 SGIP1Q9BQI5 828 aa17.91■□□□□ 0.46
SIRPB3P-201ENST00000340424 ATG3Q9NT62 314 aa17.91■□□□□ 0.46
SIRPB3P-201ENST00000340424 ASAP1Q9ULH1 1129 aa17.91■□□□□ 0.46
SIRPB3P-201ENST00000340424 NUDCQ9Y266 331 aa17.91■□□□□ 0.46
SIRPB3P-201ENST00000340424 COL24A1Q17RW2 1714 aa17.91■□□□□ 0.46
SIRPB3P-201ENST00000340424 SCN11AQ9UI33 1791 aa17.91■□□□□ 0.46
SIRPB3P-201ENST00000340424 U2SURPO15042 1029 aaKnown RBP17.9■□□□□ 0.46
SIRPB3P-201ENST00000340424 PPP2R1AP30153 589 aa17.9■□□□□ 0.46
SIRPB3P-201ENST00000340424 AK7Q96M32 723 aa17.9■□□□□ 0.46
SIRPB3P-201ENST00000340424 POLD1P28340 1107 aa17.88■□□□□ 0.45
SIRPB3P-201ENST00000340424 ATP6V1AP38606 617 aa17.88■□□□□ 0.45
SIRPB3P-201ENST00000340424 MAP3K5Q99683 1374 aa17.88■□□□□ 0.45
SIRPB3P-201ENST00000340424 MRC1P22897 1456 aa17.88■□□□□ 0.45
SIRPB3P-201ENST00000340424 ADAMTS7Q9UKP4 1686 aa17.87■□□□□ 0.45
SIRPB3P-201ENST00000340424 GAS2L2Q8NHY3 880 aa17.87■□□□□ 0.45
SIRPB3P-201ENST00000340424 ARXQ96QS3 562 aa17.87■□□□□ 0.45
SIRPB3P-201ENST00000340424 SSFA2P28290 1259 aa17.86■□□□□ 0.45
SIRPB3P-201ENST00000340424 MTHFSDQ2M296 383 aaKnown RBP17.86■□□□□ 0.45
SIRPB3P-201ENST00000340424 COL23A1Q86Y22 540 aaPredicted RBP17.86■□□□□ 0.45
SIRPB3P-201ENST00000340424 NFATC2IPQ8NCF5 419 aa17.86■□□□□ 0.45
SIRPB3P-201ENST00000340424 UBR3Q6ZT12 1888 aa17.86■□□□□ 0.45
SIRPB3P-201ENST00000340424 LINC00116Q8NCU8 138 aa17.85■□□□□ 0.45
SIRPB3P-201ENST00000340424 CICQ96RK0 1608 aaPredicted RBP17.85■□□□□ 0.45
SIRPB3P-201ENST00000340424 SLC52A2Q9HAB3 445 aa17.85■□□□□ 0.45
SIRPB3P-201ENST00000340424 RNMTO43148 476 aaKnown RBP17.84■□□□□ 0.45
SIRPB3P-201ENST00000340424 ZEB1P37275 1124 aaPredicted RBP17.84■□□□□ 0.45
SIRPB3P-201ENST00000340424 ITPK1Q13572 414 aa17.84■□□□□ 0.45
SIRPB3P-201ENST00000340424 RC3H1Q5TC82 1133 aaKnown RBP17.83■□□□□ 0.44
SIRPB3P-201ENST00000340424 RBM42Q9BTD8 480 aaKnown RBP17.83■□□□□ 0.44
SIRPB3P-201ENST00000340424 FHDC1Q9C0D6 1143 aaPredicted RBP17.83■□□□□ 0.44
SIRPB3P-201ENST00000340424 COL5A3P25940 1745 aaPredicted RBP17.83■□□□□ 0.44
SIRPB3P-201ENST00000340424 VIRMAQ69YN4 1812 aaKnown RBP17.82■□□□□ 0.44
SIRPB3P-201ENST00000340424 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.82■□□□□ 0.44
SIRPB3P-201ENST00000340424 FCHSD2O94868 740 aa17.82■□□□□ 0.44
SIRPB3P-201ENST00000340424 RSPH6AQ9H0K4 717 aa17.82■□□□□ 0.44
SIRPB3P-201ENST00000340424 CNTNAP4Q9C0A0 1308 aa17.81■□□□□ 0.44
SIRPB3P-201ENST00000340424 GNAT3A8MTJ3 354 aa17.81■□□□□ 0.44
SIRPB3P-201ENST00000340424 GNPATO15228 680 aa17.81■□□□□ 0.44
SIRPB3P-201ENST00000340424 U2AF1L5P0DN76 240 aaPredicted RBP17.81■□□□□ 0.44
SIRPB3P-201ENST00000340424 PRKAR2BP31323 418 aa17.81■□□□□ 0.44
SIRPB3P-201ENST00000340424 U2AF1Q01081 240 aaKnown RBP eCLIP17.81■□□□□ 0.44
SIRPB3P-201ENST00000340424 RALBP1Q15311 655 aa17.81■□□□□ 0.44
SIRPB3P-201ENST00000340424 SYT17Q9BSW7 474 aa17.81■□□□□ 0.44
SIRPB3P-201ENST00000340424 LGR6Q9HBX8 967 aa17.81■□□□□ 0.44
SIRPB3P-201ENST00000340424 SLC4A9Q96Q91 983 aa17.8■□□□□ 0.44
SIRPB3P-201ENST00000340424 PHF14O94880 888 aa17.79■□□□□ 0.44
SIRPB3P-201ENST00000340424 RTCBQ9Y3I0 505 aaKnown RBP17.79■□□□□ 0.44
SIRPB3P-201ENST00000340424 PTCD1O75127 700 aaKnown RBP17.78■□□□□ 0.44
SIRPB3P-201ENST00000340424 ZNF219Q9P2Y4 722 aaPredicted RBP17.78■□□□□ 0.44
SIRPB3P-201ENST00000340424 TEFQ10587 303 aa17.77■□□□□ 0.44
SIRPB3P-201ENST00000340424 VSIG10Q8N0Z9 540 aa17.77■□□□□ 0.44
SIRPB3P-201ENST00000340424 CEMIPQ8WUJ3 1361 aa17.77■□□□□ 0.43
SIRPB3P-201ENST00000340424 TJP1Q07157 1748 aa17.76■□□□□ 0.43
SIRPB3P-201ENST00000340424 NEFMP07197 916 aa17.76■□□□□ 0.43
SIRPB3P-201ENST00000340424 DDX10Q13206 875 aaKnown RBP17.76■□□□□ 0.43
SIRPB3P-201ENST00000340424 TRAPPC3LQ5T215 181 aa17.76■□□□□ 0.43
SIRPB3P-201ENST00000340424 AMIGO3Q86WK7 504 aa17.76■□□□□ 0.43
SIRPB3P-201ENST00000340424 RPS6KA4O75676 772 aa17.75■□□□□ 0.43
SIRPB3P-201ENST00000340424 MSL1Q68DK7 614 aa17.75■□□□□ 0.43
SIRPB3P-201ENST00000340424 TTC5Q8N0Z6 440 aa17.75■□□□□ 0.43
SIRPB3P-201ENST00000340424 PHACTR3Q96KR7 559 aa17.75■□□□□ 0.43
SIRPB3P-201ENST00000340424 PNNQ9H307 717 aaKnown RBP17.75■□□□□ 0.43
SIRPB3P-201ENST00000340424 SPINK5Q9NQ38 1064 aaPredicted RBP17.75■□□□□ 0.43
SIRPB3P-201ENST00000340424 KCPQ6ZWJ8 1503 aa17.75■□□□□ 0.43
SIRPB3P-201ENST00000340424 UBR2Q8IWV8 1755 aa17.75■□□□□ 0.43
SIRPB3P-201ENST00000340424 UTRNP46939 3433 aa17.75■□□□□ 0.43
SIRPB3P-201ENST00000340424 SIPA1L3O60292 1781 aaPredicted RBP17.74■□□□□ 0.43
SIRPB3P-201ENST00000340424 HTATSF1O43719 755 aaKnown RBP17.74■□□□□ 0.43
SIRPB3P-201ENST00000340424 CAPN15O75808 1086 aa17.74■□□□□ 0.43
SIRPB3P-201ENST00000340424 IL17REQ8NFR9 667 aa17.74■□□□□ 0.43
SIRPB3P-201ENST00000340424 CRKLP46109 303 aaKnown RBP17.73■□□□□ 0.43
SIRPB3P-201ENST00000340424 RTF1Q92541 710 aaKnown RBP17.73■□□□□ 0.43
SIRPB3P-201ENST00000340424 CD2APQ9Y5K6 639 aa17.73■□□□□ 0.43
SIRPB3P-201ENST00000340424 MYH14Q7Z406 1995 aaKnown RBP17.72■□□□□ 0.43
SIRPB3P-201ENST00000340424 RFC4P35249 363 aa17.72■□□□□ 0.43
SIRPB3P-201ENST00000340424 SLC39A6Q13433 755 aa17.72■□□□□ 0.43
SIRPB3P-201ENST00000340424 MYBBP1AQ9BQG0 1328 aaKnown RBP17.72■□□□□ 0.43
SIRPB3P-201ENST00000340424 ZNF790Q6PG37 636 aa17.71■□□□□ 0.43
SIRPB3P-201ENST00000340424 KLHL34Q8N239 644 aa17.71■□□□□ 0.43
SIRPB3P-201ENST00000340424 NLGN1Q8N2Q7 840 aa17.71■□□□□ 0.43
SIRPB3P-201ENST00000340424 GOLGB1Q14789 3259 aaKnown RBP17.71■□□□□ 0.42
SIRPB3P-201ENST00000340424 DNAJC10Q8IXB1 793 aa17.7■□□□□ 0.42
SIRPB3P-201ENST00000340424 ARHGEF1Q92888 912 aaKnown RBP17.7■□□□□ 0.42
SIRPB3P-201ENST00000340424 TEX13AQ9BXU3 409 aaPredicted RBP17.7■□□□□ 0.42
SIRPB3P-201ENST00000340424 CCDC87Q9NVE4 849 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms