RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 WDR63Q8IWG1 891 aa28.98■■■□□ 2.23
SDC3-202ENST00000339394 BTBD11A6QL63 1104 aa28.96■■■□□ 2.23
SDC3-202ENST00000339394 MIS18AQ9NYP9 233 aa28.96■■■□□ 2.23
SDC3-202ENST00000339394 ASAP1Q9ULH1 1129 aa28.96■■■□□ 2.23
SDC3-202ENST00000339394 LAS1LQ9Y4W2 734 aaKnown RBP28.95■■■□□ 2.22
SDC3-202ENST00000339394 SLC39A6Q13433 755 aa28.94■■■□□ 2.22
SDC3-202ENST00000339394 CFAP44Q96MT7 982 aa28.94■■■□□ 2.22
SDC3-202ENST00000339394 YTHDC1Q96MU7 727 aaKnown RBP28.94■■■□□ 2.22
SDC3-202ENST00000339394 ATG3Q9NT62 314 aa28.94■■■□□ 2.22
SDC3-202ENST00000339394 NHSQ6T4R5 1651 aa28.94■■■□□ 2.22
SDC3-202ENST00000339394 IFT57Q9NWB7 429 aa28.93■■■□□ 2.22
SDC3-202ENST00000339394 ZNF853P0CG23 659 aa28.92■■■□□ 2.22
SDC3-202ENST00000339394 IL16Q14005 1332 aa28.92■■■□□ 2.22
SDC3-202ENST00000339394 SBF2Q86WG5 1849 aa28.92■■■□□ 2.22
SDC3-202ENST00000339394 CHL1O00533 1208 aa28.92■■■□□ 2.22
SDC3-202ENST00000339394 ZNF790Q6PG37 636 aa28.92■■■□□ 2.22
SDC3-202ENST00000339394 BABAM1Q9NWV8 329 aa28.92■■■□□ 2.22
SDC3-202ENST00000339394 ZBED9Q6R2W3 1325 aa28.92■■■□□ 2.22
SDC3-202ENST00000339394 KAT6BQ8WYB5 2073 aa28.91■■■□□ 2.22
SDC3-202ENST00000339394 SPINK5Q9NQ38 1064 aaPredicted RBP28.91■■■□□ 2.22
SDC3-202ENST00000339394 TSPYL4Q9UJ04 414 aa28.91■■■□□ 2.22
SDC3-202ENST00000339394 KCNQ3O43525 872 aa28.9■■■□□ 2.22
SDC3-202ENST00000339394 APBA3O96018 575 aa28.9■■■□□ 2.22
SDC3-202ENST00000339394 ITGB4P16144 1822 aa28.9■■■□□ 2.22
SDC3-202ENST00000339394 GNAI1P63096 354 aa28.9■■■□□ 2.22
SDC3-202ENST00000339394 GOLGA2Q08379 1002 aa28.9■■■□□ 2.22
SDC3-202ENST00000339394 TTC5Q8N0Z6 440 aa28.88■■■□□ 2.21
SDC3-202ENST00000339394 VIRMAQ69YN4 1812 aaKnown RBP28.88■■■□□ 2.21
SDC3-202ENST00000339394 SMARCC1Q92922 1105 aaPredicted RBP28.88■■■□□ 2.21
SDC3-202ENST00000339394 MBIPQ9NS73 344 aa28.88■■■□□ 2.21
SDC3-202ENST00000339394 SF3B2Q13435 895 aaKnown RBP28.87■■■□□ 2.21
SDC3-202ENST00000339394 CCDC125Q86Z20 511 aa28.87■■■□□ 2.21
SDC3-202ENST00000339394 PALLDQ8WX93 1383 aa28.86■■■□□ 2.21
SDC3-202ENST00000339394 CDCA7LQ96GN5 454 aa28.86■■■□□ 2.21
SDC3-202ENST00000339394 SIPA1L3O60292 1781 aaPredicted RBP28.86■■■□□ 2.21
SDC3-202ENST00000339394 PTCD1O75127 700 aaKnown RBP28.85■■■□□ 2.21
SDC3-202ENST00000339394 UPF1Q92900 1129 aaKnown RBP eCLIP28.85■■■□□ 2.21
SDC3-202ENST00000339394 PLSCR1O15162 318 aa28.84■■■□□ 2.21
SDC3-202ENST00000339394 TSR2Q969E8 191 aaKnown RBP28.84■■■□□ 2.21
SDC3-202ENST00000339394 ZNF496Q96IT1 587 aaPredicted RBP28.84■■■□□ 2.21
SDC3-202ENST00000339394 E9PSI1 815 aa28.84■■■□□ 2.21
SDC3-202ENST00000339394 BTAF1O14981 1849 aa28.83■■■□□ 2.21
SDC3-202ENST00000339394 SLFN5Q08AF3 891 aa28.83■■■□□ 2.21
SDC3-202ENST00000339394 EIF4A1P60842 406 aaKnown RBP28.82■■■□□ 2.2
SDC3-202ENST00000339394 RBM42Q9BTD8 480 aaKnown RBP28.82■■■□□ 2.2
SDC3-202ENST00000339394 MYH16Q9H6N6 1097 aa28.82■■■□□ 2.2
SDC3-202ENST00000339394 FANCIQ9NVI1 1328 aa28.81■■■□□ 2.2
SDC3-202ENST00000339394 LOC102724428A0A0B4J2F2 783 aa28.8■■■□□ 2.2
SDC3-202ENST00000339394 SIK1P57059 783 aa28.8■■■□□ 2.2
SDC3-202ENST00000339394 FMNL2Q96PY5 1086 aa28.8■■■□□ 2.2
SDC3-202ENST00000339394 SLC4A9Q96Q91 983 aa28.79■■■□□ 2.2
SDC3-202ENST00000339394 BAG6P46379 1132 aa28.79■■■□□ 2.2
SDC3-202ENST00000339394 EN1Q05925 392 aaPredicted RBP28.79■■■□□ 2.2
SDC3-202ENST00000339394 DEFB132Q7Z7B7 95 aa28.79■■■□□ 2.2
SDC3-202ENST00000339394 TNS1Q9HBL0 1735 aaKnown RBP28.79■■■□□ 2.2
SDC3-202ENST00000339394 PAPPAQ13219 1627 aa28.78■■■□□ 2.2
SDC3-202ENST00000339394 TRMT2AQ8IZ69 625 aaKnown RBP28.78■■■□□ 2.2
SDC3-202ENST00000339394 PROM2Q8N271 834 aa28.78■■■□□ 2.2
SDC3-202ENST00000339394 KCPQ6ZWJ8 1503 aa28.78■■■□□ 2.2
SDC3-202ENST00000339394 KRT24Q2M2I5 525 aa28.76■■■□□ 2.19
SDC3-202ENST00000339394 CAMKK2Q96RR4 588 aa28.76■■■□□ 2.19
SDC3-202ENST00000339394 HEG1Q9ULI3 1381 aa28.76■■■□□ 2.19
SDC3-202ENST00000339394 ATP6V1AP38606 617 aa28.75■■■□□ 2.19
SDC3-202ENST00000339394 KCNQ4P56696 695 aa28.75■■■□□ 2.19
SDC3-202ENST00000339394 TXNRD1Q16881 649 aa28.75■■■□□ 2.19
SDC3-202ENST00000339394 VSIG10Q8N0Z9 540 aa28.75■■■□□ 2.19
SDC3-202ENST00000339394 CCNL1Q9UK58 526 aaPredicted RBP28.75■■■□□ 2.19
SDC3-202ENST00000339394 KDM3BQ7LBC6 1761 aa28.75■■■□□ 2.19
SDC3-202ENST00000339394 EZH2Q15910 746 aaKnown RBP28.75■■■□□ 2.19
SDC3-202ENST00000339394 GIGYF1O75420 1035 aaPredicted RBP28.74■■■□□ 2.19
SDC3-202ENST00000339394 DUSP27Q5VZP5 1158 aa28.74■■■□□ 2.19
SDC3-202ENST00000339394 SNRPA1P09661 255 aaKnown RBP28.73■■■□□ 2.19
SDC3-202ENST00000339394 SLC27A3Q5K4L6 730 aa28.73■■■□□ 2.19
SDC3-202ENST00000339394 LRRC4BQ9NT99 713 aa28.73■■■□□ 2.19
SDC3-202ENST00000339394 PRAMEF22A3QJZ6 481 aa28.72■■■□□ 2.19
SDC3-202ENST00000339394 ITPK1Q13572 414 aa28.72■■■□□ 2.19
SDC3-202ENST00000339394 C8orf58Q8NAV2 365 aa28.72■■■□□ 2.19
SDC3-202ENST00000339394 EXOSC9Q06265 439 aaKnown RBP28.71■■■□□ 2.19
SDC3-202ENST00000339394 ELL2O00472 640 aaPredicted RBP28.71■■■□□ 2.19
SDC3-202ENST00000339394 DNAJC10Q8IXB1 793 aa28.71■■■□□ 2.19
SDC3-202ENST00000339394 UBR2Q8IWV8 1755 aa28.7■■■□□ 2.19
SDC3-202ENST00000339394 TSPYL6Q8N831 410 aa28.7■■■□□ 2.18
SDC3-202ENST00000339394 TEX13AQ9BXU3 409 aaPredicted RBP28.68■■■□□ 2.18
SDC3-202ENST00000339394 USP16Q9Y5T5 823 aa28.68■■■□□ 2.18
SDC3-202ENST00000339394 LY75O60449 1722 aa28.67■■■□□ 2.18
SDC3-202ENST00000339394 HOXB7P09629 217 aa28.66■■■□□ 2.18
SDC3-202ENST00000339394 TWISTNBQ3B726 338 aaPredicted RBP28.66■■■□□ 2.18
SDC3-202ENST00000339394 LINC00116Q8NCU8 138 aa28.66■■■□□ 2.18
SDC3-202ENST00000339394 STARD3NLO95772 234 aa28.64■■■□□ 2.18
SDC3-202ENST00000339394 CYP19A1P11511 503 aaPredicted RBP28.64■■■□□ 2.18
SDC3-202ENST00000339394 RGPD3A6NKT7 1758 aaPredicted RBP28.63■■■□□ 2.17
SDC3-202ENST00000339394 RGPD4Q7Z3J3 1758 aa28.63■■■□□ 2.17
SDC3-202ENST00000339394 VAMP4O75379 141 aa28.62■■■□□ 2.17
SDC3-202ENST00000339394 EIF2S2P20042 333 aaKnown RBP28.62■■■□□ 2.17
SDC3-202ENST00000339394 SOS1Q07889 1333 aaPredicted RBP28.62■■■□□ 2.17
SDC3-202ENST00000339394 ZNF831Q5JPB2 1677 aa28.6■■■□□ 2.17
SDC3-202ENST00000339394 HMGB2P26583 209 aaKnown RBP28.6■■■□□ 2.17
SDC3-202ENST00000339394 HDGFL1Q5TGJ6 251 aa28.6■■■□□ 2.17
SDC3-202ENST00000339394 NECTIN2Q92692 538 aa28.6■■■□□ 2.17
SDC3-202ENST00000339394 CRKLP46109 303 aaKnown RBP28.59■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 86.3 ms