RNA–Protein interactions for RNA: ENST00000336873.9

HPS4-201, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HPS4, Length 3,786 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-201ENST00000336873 SPHKAPQ2M3C7 1700 aa9.94□□□□□ -0.82
HPS4-201ENST00000336873 EIF2AK4Q9P2K8 1649 aaKnown RBP9.94□□□□□ -0.82
HPS4-201ENST00000336873 TAF7LQ5H9L4 462 aa9.94□□□□□ -0.82
HPS4-201ENST00000336873 ANKRD44Q8N8A2 993 aa9.94□□□□□ -0.82
HPS4-201ENST00000336873 TMX3Q96JJ7 454 aa9.94□□□□□ -0.82
HPS4-201ENST00000336873 LRRC2Q9BYS8 371 aa9.94□□□□□ -0.82
HPS4-201ENST00000336873 PRIM1P49642 420 aaKnown RBP9.93□□□□□ -0.82
HPS4-201ENST00000336873 KIAA2012Q0VF49 1180 aa9.93□□□□□ -0.82
HPS4-201ENST00000336873 FAM173BQ6P4H8 233 aa9.93□□□□□ -0.82
HPS4-201ENST00000336873 TTC5Q8N0Z6 440 aa9.93□□□□□ -0.82
HPS4-201ENST00000336873 RAPGEF4Q8WZA2 1011 aa9.93□□□□□ -0.82
HPS4-201ENST00000336873 DCTPP1Q9H773 170 aa9.93□□□□□ -0.82
HPS4-201ENST00000336873 TFIP11Q9UBB9 837 aaKnown RBP9.93□□□□□ -0.82
HPS4-201ENST00000336873 TNRQ92752 1358 aa9.93□□□□□ -0.82
HPS4-201ENST00000336873 NPC1L1Q9UHC9 1359 aa9.93□□□□□ -0.82
HPS4-201ENST00000336873 ZKSCAN1P17029 563 aaPredicted RBP9.93□□□□□ -0.82
HPS4-201ENST00000336873 RAB11FIP4Q86YS3 637 aa9.93□□□□□ -0.82
HPS4-201ENST00000336873 ZNF592Q92610 1267 aa9.93□□□□□ -0.82
HPS4-201ENST00000336873 STRN4Q9NRL3 753 aa9.93□□□□□ -0.82
HPS4-201ENST00000336873 H3BQV1 296 aa9.93□□□□□ -0.82
HPS4-201ENST00000336873 KCNA6P17658 529 aa9.93□□□□□ -0.82
HPS4-201ENST00000336873 IFFO2Q5TF58 517 aa9.93□□□□□ -0.82
HPS4-201ENST00000336873 SETD1BQ9UPS6 1966 aaKnown RBP9.93□□□□□ -0.82
HPS4-201ENST00000336873 NBPF7P0C2Y1 421 aaPredicted RBP9.92□□□□□ -0.82
HPS4-201ENST00000336873 NEXNQ0ZGT2 675 aa9.92□□□□□ -0.82
HPS4-201ENST00000336873 BICD2Q8TD16 824 aa9.92□□□□□ -0.82
HPS4-201ENST00000336873 GPATCH3Q96I76 525 aa9.92□□□□□ -0.82
HPS4-201ENST00000336873 METP08581 1390 aa9.92□□□□□ -0.82
HPS4-201ENST00000336873 MLH3Q9UHC1 1453 aa9.92□□□□□ -0.82
HPS4-201ENST00000336873 ZFYVE16Q7Z3T8 1539 aa9.92□□□□□ -0.82
HPS4-201ENST00000336873 UNC5CLQ8IV45 518 aa9.92□□□□□ -0.82
HPS4-201ENST00000336873 FMNL2Q96PY5 1086 aa9.92□□□□□ -0.82
HPS4-201ENST00000336873 PALD1Q9ULE6 856 aa9.92□□□□□ -0.82
HPS4-201ENST00000336873 SYNMO15061 1565 aa9.92□□□□□ -0.82
HPS4-201ENST00000336873 CNTROBQ8N137 903 aa9.92□□□□□ -0.82
HPS4-201ENST00000336873 GUCY1B3Q02153 619 aa9.91□□□□□ -0.82
HPS4-201ENST00000336873 ANKLE2Q86XL3 938 aa9.91□□□□□ -0.82
HPS4-201ENST00000336873 CREBRFQ8IUR6 639 aa9.91□□□□□ -0.82
HPS4-201ENST00000336873 FAM184AQ8NB25 1140 aa9.91□□□□□ -0.82
HPS4-201ENST00000336873 SYAP1Q96A49 352 aaPredicted RBP9.91□□□□□ -0.82
HPS4-201ENST00000336873 USP26Q9BXU7 913 aa9.91□□□□□ -0.82
HPS4-201ENST00000336873 ZMYM3Q14202 1370 aa9.91□□□□□ -0.82
HPS4-201ENST00000336873 CLTCL1P53675 1640 aa9.91□□□□□ -0.82
HPS4-201ENST00000336873 IL16Q14005 1332 aa9.91□□□□□ -0.82
HPS4-201ENST00000336873 PROSER2Q86WR7 435 aaPredicted RBP9.91□□□□□ -0.82
HPS4-201ENST00000336873 USP25Q9UHP3 1055 aa9.91□□□□□ -0.82
HPS4-201ENST00000336873 ARAP3Q8WWN8 1544 aa9.9□□□□□ -0.82
HPS4-201ENST00000336873 RIMS2Q9UQ26 1411 aa9.9□□□□□ -0.82
HPS4-201ENST00000336873 NPHP1O15259 732 aa9.9□□□□□ -0.82
HPS4-201ENST00000336873 APPP05067 770 aa9.9□□□□□ -0.82
HPS4-201ENST00000336873 MAP3K2Q9Y2U5 619 aa9.9□□□□□ -0.82
HPS4-201ENST00000336873 PRAMEF22A3QJZ6 481 aa9.9□□□□□ -0.82
HPS4-201ENST00000336873 EDC3Q96F86 508 aaKnown RBP9.9□□□□□ -0.82
HPS4-201ENST00000336873 PRR36Q9H6K5 1346 aa9.9□□□□□ -0.83
HPS4-201ENST00000336873 PDIA4P13667 645 aaKnown RBP9.9□□□□□ -0.83
HPS4-201ENST00000336873 ZSCAN23Q3MJ62 389 aa9.9□□□□□ -0.83
HPS4-201ENST00000336873 CKAP2LQ8IYA6 745 aa9.9□□□□□ -0.83
HPS4-201ENST00000336873 NSD2O96028 1365 aa9.89□□□□□ -0.83
HPS4-201ENST00000336873 GNL2Q13823 731 aaKnown RBP9.89□□□□□ -0.83
HPS4-201ENST00000336873 MROH2AA6NES4 1674 aa9.89□□□□□ -0.83
HPS4-201ENST00000336873 PLXNC1O60486 1568 aa9.89□□□□□ -0.83
HPS4-201ENST00000336873 RAB3GAP1Q15042 981 aa9.89□□□□□ -0.83
HPS4-201ENST00000336873 DNAAF4Q8WXU2 420 aa9.89□□□□□ -0.83
HPS4-201ENST00000336873 ATP2B1P20020 1258 aa9.89□□□□□ -0.83
HPS4-201ENST00000336873 WASHC4Q2M389 1173 aa9.89□□□□□ -0.83
HPS4-201ENST00000336873 RHPN1Q8TCX5 695 aa9.89□□□□□ -0.83
HPS4-201ENST00000336873 ORAI2Q96SN7 254 aa9.89□□□□□ -0.83
HPS4-201ENST00000336873 SNRKQ9NRH2 765 aa9.89□□□□□ -0.83
HPS4-201ENST00000336873 PHF8Q9UPP1 1060 aa9.89□□□□□ -0.83
HPS4-201ENST00000336873 IFT172Q9UG01 1749 aa9.88□□□□□ -0.83
HPS4-201ENST00000336873 HCLS1P14317 486 aaPredicted RBP9.88□□□□□ -0.83
HPS4-201ENST00000336873 FKBP4Q02790 459 aaKnown RBP eCLIP9.88□□□□□ -0.83
HPS4-201ENST00000336873 LARP1BQ659C4 914 aaKnown RBP9.88□□□□□ -0.83
HPS4-201ENST00000336873 GIMAP6Q6P9H5 292 aa9.88□□□□□ -0.83
HPS4-201ENST00000336873 ARHGAP45Q92619 1136 aa9.88□□□□□ -0.83
HPS4-201ENST00000336873 MYD88Q99836 296 aa9.88□□□□□ -0.83
HPS4-201ENST00000336873 CNPY2Q9Y2B0 182 aa9.88□□□□□ -0.83
HPS4-201ENST00000336873 CHL1O00533 1208 aa9.88□□□□□ -0.83
HPS4-201ENST00000336873 RBM25P49756 843 aaKnown RBP9.88□□□□□ -0.83
HPS4-201ENST00000336873 C17orf53Q8N3J3 647 aaPredicted RBP9.88□□□□□ -0.83
HPS4-201ENST00000336873 ZBTB9Q96C00 473 aa9.88□□□□□ -0.83
HPS4-201ENST00000336873 SF3A1Q15459 793 aaKnown RBP9.88□□□□□ -0.83
HPS4-201ENST00000336873 CHST3Q7LGC8 479 aa9.88□□□□□ -0.83
HPS4-201ENST00000336873 IL17REQ8NFR9 667 aa9.88□□□□□ -0.83
HPS4-201ENST00000336873 ZC3H13Q5T200 1668 aaKnown RBP9.87□□□□□ -0.83
HPS4-201ENST00000336873 PLEKHO1Q53GL0 409 aaPredicted RBP9.87□□□□□ -0.83
HPS4-201ENST00000336873 RUFY2Q8WXA3 655 aa9.87□□□□□ -0.83
HPS4-201ENST00000336873 ESYT1Q9BSJ8 1104 aa9.87□□□□□ -0.83
HPS4-201ENST00000336873 IQSEC2Q5JU85 1478 aa9.87□□□□□ -0.83
HPS4-201ENST00000336873 ERBB4Q15303 1308 aa9.87□□□□□ -0.83
HPS4-201ENST00000336873 KDM5AP29375 1690 aaKnown RBP9.87□□□□□ -0.83
HPS4-201ENST00000336873 RBSNQ9H1K0 784 aa9.87□□□□□ -0.83
HPS4-201ENST00000336873 CIZ1Q9ULV3 898 aaPredicted RBP9.87□□□□□ -0.83
HPS4-201ENST00000336873 NSFL1CQ9UNZ2 370 aaKnown RBP9.87□□□□□ -0.83
HPS4-201ENST00000336873 GADD45BO75293 160 aaPredicted RBP9.87□□□□□ -0.83
HPS4-201ENST00000336873 EVA1CP58658 441 aa9.87□□□□□ -0.83
HPS4-201ENST00000336873 HSP90AB3PQ58FF7 597 aa9.87□□□□□ -0.83
HPS4-201ENST00000336873 UBE3BQ7Z3V4 1068 aa9.87□□□□□ -0.83
HPS4-201ENST00000336873 PHF23Q9BUL5 403 aaPredicted RBP9.87□□□□□ -0.83
HPS4-201ENST00000336873 ZBTB3Q9H5J0 574 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms