RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 ATF7IPQ6VMQ6 1270 aa14.75□□□□□ -0.05
SDC3-201ENST00000336798 CFAP45Q9UL16 551 aa14.75□□□□□ -0.05
SDC3-201ENST00000336798 DYDC1Q8WWB3 177 aa14.74□□□□□ -0.05
SDC3-201ENST00000336798 FYCO1Q9BQS8 1478 aa14.74□□□□□ -0.05
SDC3-201ENST00000336798 PRPF40BQ6NWY9 871 aaKnown RBP14.74□□□□□ -0.05
SDC3-201ENST00000336798 RRBP1Q9P2E9 1410 aaKnown RBP14.74□□□□□ -0.05
SDC3-201ENST00000336798 RAD54L2Q9Y4B4 1467 aa14.74□□□□□ -0.05
SDC3-201ENST00000336798 EIF3JO75822 258 aaKnown RBP14.74□□□□□ -0.05
SDC3-201ENST00000336798 IRX3P78415 501 aaPredicted RBP14.74□□□□□ -0.05
SDC3-201ENST00000336798 TNIP1Q15025 636 aa14.74□□□□□ -0.05
SDC3-201ENST00000336798 BCCIPQ9P287 314 aaKnown RBP eCLIP14.74□□□□□ -0.05
SDC3-201ENST00000336798 RTEL1-TNFRSF6BF6WH68 1400 aa14.74□□□□□ -0.05
SDC3-201ENST00000336798 POTEJP0CG39 1038 aa14.74□□□□□ -0.05
SDC3-201ENST00000336798 MVPQ14764 893 aaKnown RBP14.74□□□□□ -0.05
SDC3-201ENST00000336798 DZIP1Q86YF9 867 aaKnown RBP14.74□□□□□ -0.05
SDC3-201ENST00000336798 SYCE3A1L190 88 aa14.74□□□□□ -0.05
SDC3-201ENST00000336798 ZNF397Q8NF99 534 aaPredicted RBP14.74□□□□□ -0.05
SDC3-201ENST00000336798 MPRIPQ6WCQ1 1025 aa14.73□□□□□ -0.05
SDC3-201ENST00000336798 THEMISQ8N1K5 641 aaPredicted RBP14.73□□□□□ -0.05
SDC3-201ENST00000336798 PPFIA3O75145 1194 aa14.73□□□□□ -0.05
SDC3-201ENST00000336798 CPLX3Q8WVH0 158 aa14.73□□□□□ -0.05
SDC3-201ENST00000336798 CBX1P83916 185 aa14.73□□□□□ -0.05
SDC3-201ENST00000336798 SPTY2D1Q68D10 685 aaPredicted RBP14.73□□□□□ -0.05
SDC3-201ENST00000336798 CCDC144CPQ8IYA2 1237 aa14.73□□□□□ -0.05
SDC3-201ENST00000336798 TRIM21P19474 475 aaKnown RBP14.73□□□□□ -0.05
SDC3-201ENST00000336798 HMGN5P82970 282 aaKnown RBP14.73□□□□□ -0.05
SDC3-201ENST00000336798 CAVIN4Q5BKX8 364 aa14.73□□□□□ -0.05
SDC3-201ENST00000336798 PPP4R3AQ6IN85 833 aa14.73□□□□□ -0.05
SDC3-201ENST00000336798 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.73□□□□□ -0.05
SDC3-201ENST00000336798 STARD3NLO95772 234 aa14.73□□□□□ -0.05
SDC3-201ENST00000336798 CA8P35219 290 aa14.72□□□□□ -0.05
SDC3-201ENST00000336798 UBE4AQ14139 1066 aa14.72□□□□□ -0.05
SDC3-201ENST00000336798 IQCEQ6IPM2 695 aa14.72□□□□□ -0.05
SDC3-201ENST00000336798 WASF1Q92558 559 aa14.72□□□□□ -0.05
SDC3-201ENST00000336798 ECM2O94769 699 aaPredicted RBP14.72□□□□□ -0.05
SDC3-201ENST00000336798 MAP2K1Q02750 393 aaPredicted RBP14.72□□□□□ -0.05
SDC3-201ENST00000336798 CACNA2D4Q7Z3S7 1137 aa14.72□□□□□ -0.05
SDC3-201ENST00000336798 FGD6Q6ZV73 1430 aa14.72□□□□□ -0.05
SDC3-201ENST00000336798 PPP1R12BO60237 982 aaPredicted RBP14.72□□□□□ -0.05
SDC3-201ENST00000336798 CCDC148Q8NFR7 591 aa14.72□□□□□ -0.05
SDC3-201ENST00000336798 TMOD3Q9NYL9 352 aa14.72□□□□□ -0.05
SDC3-201ENST00000336798 SMTNL1A8MU46 457 aa14.71□□□□□ -0.05
SDC3-201ENST00000336798 CCDC8Q9H0W5 538 aaPredicted RBP14.71□□□□□ -0.05
SDC3-201ENST00000336798 VAT1LQ9HCJ6 419 aa14.71□□□□□ -0.05
SDC3-201ENST00000336798 GNAT3A8MTJ3 354 aa14.71□□□□□ -0.05
SDC3-201ENST00000336798 CEP131Q9UPN4 1083 aa14.71□□□□□ -0.05
SDC3-201ENST00000336798 GRM1Q13255 1194 aa14.71□□□□□ -0.05
SDC3-201ENST00000336798 SPA17Q15506 151 aa14.71□□□□□ -0.05
SDC3-201ENST00000336798 GSTTP1A0A1W2PQM5 241 aa14.71□□□□□ -0.06
SDC3-201ENST00000336798 TMEM57Q8N5G2 664 aa14.71□□□□□ -0.06
SDC3-201ENST00000336798 ZNF692Q9BU19 519 aaPredicted RBP14.71□□□□□ -0.06
SDC3-201ENST00000336798 GAPVD1Q14C86 1478 aa14.71□□□□□ -0.06
SDC3-201ENST00000336798 COMMD10Q9Y6G5 202 aa14.7□□□□□ -0.06
SDC3-201ENST00000336798 RAB11FIP4Q86YS3 637 aa14.7□□□□□ -0.06
SDC3-201ENST00000336798 PDE3AQ14432 1141 aa14.7□□□□□ -0.06
SDC3-201ENST00000336798 NAPBQ9H115 298 aa14.7□□□□□ -0.06
SDC3-201ENST00000336798 PPP6R1Q9UPN7 881 aa14.7□□□□□ -0.06
SDC3-201ENST00000336798 IFIT1P09914 478 aaKnown RBP14.7□□□□□ -0.06
SDC3-201ENST00000336798 ZSCAN31Q96LW9 406 aaPredicted RBP14.7□□□□□ -0.06
SDC3-201ENST00000336798 GPTP24298 496 aa14.69□□□□□ -0.06
SDC3-201ENST00000336798 ANKLE2Q86XL3 938 aa14.69□□□□□ -0.06
SDC3-201ENST00000336798 ZNF444Q8N0Y2 327 aaPredicted RBP14.69□□□□□ -0.06
SDC3-201ENST00000336798 TSG101Q99816 390 aa14.69□□□□□ -0.06
SDC3-201ENST00000336798 AQRO60306 1485 aaKnown RBP eCLIP14.69□□□□□ -0.062e-6■■□□□ 14
SDC3-201ENST00000336798 USP8P40818 1118 aa14.69□□□□□ -0.06
SDC3-201ENST00000336798 CCT2P78371 535 aaKnown RBP14.69□□□□□ -0.06
SDC3-201ENST00000336798 MAP3K11Q16584 847 aa14.69□□□□□ -0.06
SDC3-201ENST00000336798 CCDC91Q7Z6B0 441 aa14.69□□□□□ -0.06
SDC3-201ENST00000336798 MMRN2Q9H8L6 949 aa14.69□□□□□ -0.06
SDC3-201ENST00000336798 SKAP1Q86WV1 359 aa14.68□□□□□ -0.06
SDC3-201ENST00000336798 KRT32Q14532 448 aa14.68□□□□□ -0.06
SDC3-201ENST00000336798 DUSP27Q5VZP5 1158 aa14.68□□□□□ -0.06
SDC3-201ENST00000336798 ISM2Q6H9L7 571 aa14.68□□□□□ -0.06
SDC3-201ENST00000336798 RPGRQ92834 1020 aaKnown RBP14.68□□□□□ -0.06
SDC3-201ENST00000336798 TRERF1Q96PN7 1200 aa14.68□□□□□ -0.06
SDC3-201ENST00000336798 CASQ1P31415 396 aa14.68□□□□□ -0.06
SDC3-201ENST00000336798 FKBP15Q5T1M5 1219 aa14.68□□□□□ -0.06
SDC3-201ENST00000336798 CUL5Q93034 780 aa14.68□□□□□ -0.06
SDC3-201ENST00000336798 SERPINA10Q9UK55 444 aa14.68□□□□□ -0.06
SDC3-201ENST00000336798 TDRD12Q587J7 1177 aaKnown RBP14.67□□□□□ -0.06
SDC3-201ENST00000336798 CETN2P41208 172 aa14.67□□□□□ -0.06
SDC3-201ENST00000336798 TRMT112Q9UI30 125 aaKnown RBP14.67□□□□□ -0.06
SDC3-201ENST00000336798 ZNF652Q9Y2D9 606 aa14.67□□□□□ -0.06
SDC3-201ENST00000336798 F6X3S4 739 aa14.67□□□□□ -0.06
SDC3-201ENST00000336798 RAPGEF3O95398 923 aa14.67□□□□□ -0.06
SDC3-201ENST00000336798 LARP1Q6PKG0 1096 aaKnown RBP14.67□□□□□ -0.06
SDC3-201ENST00000336798 PANK2Q9BZ23 570 aa14.67□□□□□ -0.06
SDC3-201ENST00000336798 PUF60Q9UHX1 559 aaKnown RBP14.67□□□□□ -0.06
SDC3-201ENST00000336798 NLRP5P59047 1200 aa14.67□□□□□ -0.06
SDC3-201ENST00000336798 IFFO1Q0D2I5 559 aa14.67□□□□□ -0.06
SDC3-201ENST00000336798 PUS7Q96PZ0 661 aaKnown RBP14.67□□□□□ -0.06
SDC3-201ENST00000336798 CTNNA2P26232 953 aa14.67□□□□□ -0.06
SDC3-201ENST00000336798 NF2P35240 595 aa14.67□□□□□ -0.06
SDC3-201ENST00000336798 NUP88Q99567 741 aaPredicted RBP14.67□□□□□ -0.06
SDC3-201ENST00000336798 LUZP1Q86V48 1076 aa14.66□□□□□ -0.06
SDC3-201ENST00000336798 WWC3Q9ULE0 1092 aa14.66□□□□□ -0.06
SDC3-201ENST00000336798 TMCO3Q6UWJ1 677 aa14.66□□□□□ -0.06
SDC3-201ENST00000336798 CRACR2AQ9BSW2 395 aa14.66□□□□□ -0.06
SDC3-201ENST00000336798 C6orf229H3BNL8 230 aa14.66□□□□□ -0.06
SDC3-201ENST00000336798 INCENPQ9NQS7 918 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms