RNA–Protein interactions for RNA: ENST00000336180.6

LIMK1-201, Transcript of LIM domain kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMK1, Length 3,219 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-201ENST00000336180 PROSER3Q2NL68 480 aa15.73■□□□□ 0.11
LIMK1-201ENST00000336180 INTS3Q68E01 1043 aaKnown RBP15.73■□□□□ 0.11
LIMK1-201ENST00000336180 LTN1O94822 1766 aa15.73■□□□□ 0.11
LIMK1-201ENST00000336180 CCDC30Q5VVM6 783 aa15.73■□□□□ 0.11
LIMK1-201ENST00000336180 UPF2Q9HAU5 1272 aaKnown RBP15.73■□□□□ 0.11
LIMK1-201ENST00000336180 PLEKHO1Q53GL0 409 aaPredicted RBP15.72■□□□□ 0.11
LIMK1-201ENST00000336180 ZNF142P52746 1687 aaPredicted RBP15.72■□□□□ 0.11
LIMK1-201ENST00000336180 KIAA0232Q92628 1395 aa15.72■□□□□ 0.11
LIMK1-201ENST00000336180 NFAT5O94916 1531 aa15.71■□□□□ 0.11
LIMK1-201ENST00000336180 PNMA6EA0A0J9YXQ4 647 aa15.71■□□□□ 0.11
LIMK1-201ENST00000336180 LRRFIP2Q9Y608 721 aaKnown RBP15.71■□□□□ 0.11
LIMK1-201ENST00000336180 RTL5Q5HYW3 569 aaPredicted RBP15.71■□□□□ 0.11
LIMK1-201ENST00000336180 STRN4Q9NRL3 753 aa15.71■□□□□ 0.11
LIMK1-201ENST00000336180 RTL1A6NKG5 1358 aa15.71■□□□□ 0.1
LIMK1-201ENST00000336180 EIF4A1P60842 406 aaKnown RBP15.7■□□□□ 0.1
LIMK1-201ENST00000336180 JARID2Q92833 1246 aaPredicted RBP15.7■□□□□ 0.1
LIMK1-201ENST00000336180 FOXD4L1Q9NU39 408 aa15.7■□□□□ 0.1
LIMK1-201ENST00000336180 RNMTO43148 476 aaKnown RBP15.7■□□□□ 0.1
LIMK1-201ENST00000336180 RAPGEF4Q8WZA2 1011 aa15.7■□□□□ 0.1
LIMK1-201ENST00000336180 MYL6BP14649 208 aa15.7■□□□□ 0.1
LIMK1-201ENST00000336180 C22orf23Q9BZE7 217 aa15.7■□□□□ 0.1
LIMK1-201ENST00000336180 PI4KAP2A4QPH2 592 aa15.69■□□□□ 0.1
LIMK1-201ENST00000336180 PI4KAP1Q8N8J0 262 aa15.69■□□□□ 0.1
LIMK1-201ENST00000336180 PDIA4P13667 645 aaKnown RBP15.69■□□□□ 0.1
LIMK1-201ENST00000336180 GSPT1P15170 499 aaKnown RBP15.69■□□□□ 0.1
LIMK1-201ENST00000336180 ANKRD44Q8N8A2 993 aa15.69■□□□□ 0.1
LIMK1-201ENST00000336180 NFATC2IPQ8NCF5 419 aa15.69■□□□□ 0.1
LIMK1-201ENST00000336180 PTPRCP08575 1304 aa15.69■□□□□ 0.1
LIMK1-201ENST00000336180 ERBB3P21860 1342 aa15.69■□□□□ 0.1
LIMK1-201ENST00000336180 IL27Q8NEV9 243 aa15.68■□□□□ 0.1
LIMK1-201ENST00000336180 TBC1D32Q96NH3 1257 aa15.68■□□□□ 0.1
LIMK1-201ENST00000336180 IL1RAPL2Q9NP60 686 aa15.68■□□□□ 0.1
LIMK1-201ENST00000336180 AKAP4Q5JQC9 854 aa15.68■□□□□ 0.1
LIMK1-201ENST00000336180 BRINP3Q76B58 766 aa15.68■□□□□ 0.1
LIMK1-201ENST00000336180 GCC1Q96CN9 775 aa15.68■□□□□ 0.1
LIMK1-201ENST00000336180 MST1RQ04912 1400 aa15.68■□□□□ 0.1
LIMK1-201ENST00000336180 RBM42Q9BTD8 480 aaKnown RBP15.68■□□□□ 0.1
LIMK1-201ENST00000336180 CADPS2Q86UW7 1296 aa15.67■□□□□ 0.1
LIMK1-201ENST00000336180 PLEKHM2Q8IWE5 1019 aa15.67■□□□□ 0.1
LIMK1-201ENST00000336180 NBPF7P0C2Y1 421 aaPredicted RBP15.66■□□□□ 0.1
LIMK1-201ENST00000336180 DCTPP1Q9H773 170 aa15.66■□□□□ 0.1
LIMK1-201ENST00000336180 ATP10DQ9P241 1426 aa15.66■□□□□ 0.1
LIMK1-201ENST00000336180 TBC1D9Q6ZT07 1266 aa15.66■□□□□ 0.1
LIMK1-201ENST00000336180 TBC1D2Q9BYX2 928 aa15.66■□□□□ 0.1
LIMK1-201ENST00000336180 STRCP1A6NGW2 1772 aa15.66■□□□□ 0.1
LIMK1-201ENST00000336180 HTATSF1O43719 755 aaKnown RBP15.66■□□□□ 0.1
LIMK1-201ENST00000336180 MAP4K4O95819 1239 aaPredicted RBP15.66■□□□□ 0.1
LIMK1-201ENST00000336180 CWF19L2Q2TBE0 894 aaKnown RBP15.66■□□□□ 0.1
LIMK1-201ENST00000336180 PRDM11Q9NQV5 511 aa15.66■□□□□ 0.1
LIMK1-201ENST00000336180 FRAT2O75474 233 aaPredicted RBP15.65■□□□□ 0.1
LIMK1-201ENST00000336180 GNAI2P04899 355 aa15.65■□□□□ 0.1
LIMK1-201ENST00000336180 DDX54Q8TDD1 881 aaKnown RBP15.64■□□□□ 0.09
LIMK1-201ENST00000336180 USP44Q9H0E7 712 aa15.64■□□□□ 0.09
LIMK1-201ENST00000336180 CCT4P50991 539 aaKnown RBP15.64■□□□□ 0.09
LIMK1-201ENST00000336180 CHMP4BQ9H444 224 aaKnown RBP15.64■□□□□ 0.09
LIMK1-201ENST00000336180 NPHP3Q7Z494 1330 aa15.64■□□□□ 0.09
LIMK1-201ENST00000336180 NFKBIBQ15653 356 aa15.63■□□□□ 0.09
LIMK1-201ENST00000336180 TOM1L2Q6ZVM7 507 aa15.63■□□□□ 0.09
LIMK1-201ENST00000336180 UBTFL1P0CB47 393 aaPredicted RBP15.63■□□□□ 0.09
LIMK1-201ENST00000336180 TATP17735 454 aaPredicted RBP15.63■□□□□ 0.09
LIMK1-201ENST00000336180 RGPD5Q99666 1765 aa15.63■□□□□ 0.09
LIMK1-201ENST00000336180 KIF24Q5T7B8 1368 aa15.62■□□□□ 0.09
LIMK1-201ENST00000336180 NUTM1Q86Y26 1132 aa15.62■□□□□ 0.09
LIMK1-201ENST00000336180 SLAIN2Q9P270 581 aa15.62■□□□□ 0.09
LIMK1-201ENST00000336180 MED1Q15648 1581 aaPredicted RBP15.62■□□□□ 0.09
LIMK1-201ENST00000336180 CEMIPQ8WUJ3 1361 aa15.62■□□□□ 0.09
LIMK1-201ENST00000336180 MAP3K2Q9Y2U5 619 aa15.62■□□□□ 0.09
LIMK1-201ENST00000336180 A0A0G2JS52 829 aa15.62■□□□□ 0.09
LIMK1-201ENST00000336180 RPAP2Q8IXW5 612 aaPredicted RBP15.62■□□□□ 0.09
LIMK1-201ENST00000336180 CYP27B1O15528 508 aa15.61■□□□□ 0.09
LIMK1-201ENST00000336180 AMOTQ4VCS5 1084 aa15.61■□□□□ 0.09
LIMK1-201ENST00000336180 BCL11BQ9C0K0 894 aaPredicted RBP15.61■□□□□ 0.09
LIMK1-201ENST00000336180 SRCIN1Q9C0H9 1055 aa15.61■□□□□ 0.09
LIMK1-201ENST00000336180 ZNF330Q9Y3S2 320 aaPredicted RBP15.61■□□□□ 0.09
LIMK1-201ENST00000336180 GIGYF1O75420 1035 aaPredicted RBP15.6■□□□□ 0.09
LIMK1-201ENST00000336180 SDSP20132 328 aa15.6■□□□□ 0.09
LIMK1-201ENST00000336180 BMP2KLQ5H9B9 411 aa15.6■□□□□ 0.09
LIMK1-201ENST00000336180 ZNF496Q96IT1 587 aaPredicted RBP15.6■□□□□ 0.09
LIMK1-201ENST00000336180 SPATA31A3Q5VYP0 1347 aa15.6■□□□□ 0.09
LIMK1-201ENST00000336180 CD2BP2O95400 341 aaKnown RBP15.6■□□□□ 0.09
LIMK1-201ENST00000336180 PPP1R42Q7Z4L9 355 aa15.6■□□□□ 0.09
LIMK1-201ENST00000336180 DNAAF4Q8WXU2 420 aa15.6■□□□□ 0.09
LIMK1-201ENST00000336180 PA2G4Q9UQ80 394 aaKnown RBP15.6■□□□□ 0.09
LIMK1-201ENST00000336180 USP16Q9Y5T5 823 aa15.6■□□□□ 0.09
LIMK1-201ENST00000336180 MEGF6O75095 1541 aa15.59■□□□□ 0.09
LIMK1-201ENST00000336180 PTCD1O75127 700 aaKnown RBP15.59■□□□□ 0.09
LIMK1-201ENST00000336180 SURF6O75683 361 aaKnown RBP15.59■□□□□ 0.09
LIMK1-201ENST00000336180 RILPL2Q969X0 211 aa15.59■□□□□ 0.09
LIMK1-201ENST00000336180 SRGAP3O43295 1099 aa15.59■□□□□ 0.09
LIMK1-201ENST00000336180 PHKG2P15735 406 aa15.59■□□□□ 0.09
LIMK1-201ENST00000336180 ARXQ96QS3 562 aa15.59■□□□□ 0.09
LIMK1-201ENST00000336180 ZMYND15Q9H091 742 aa15.59■□□□□ 0.09
LIMK1-201ENST00000336180 BECN1Q14457 450 aa15.58■□□□□ 0.08
LIMK1-201ENST00000336180 TTC22Q5TAA0 569 aa15.58■□□□□ 0.08
LIMK1-201ENST00000336180 TRIM6-TRIM34B2RNG4 842 aa15.58■□□□□ 0.08
LIMK1-201ENST00000336180 HMMRO75330 724 aa15.58■□□□□ 0.08
LIMK1-201ENST00000336180 ZNF790Q6PG37 636 aa15.57■□□□□ 0.08
LIMK1-201ENST00000336180 LARP1Q6PKG0 1096 aaKnown RBP15.57■□□□□ 0.08
LIMK1-201ENST00000336180 KLHDC4Q8TBB5 520 aa15.57■□□□□ 0.08
LIMK1-201ENST00000336180 C9orf78Q9NZ63 289 aaPredicted RBP15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms