RNA–Protein interactions for RNA: ENST00000332840.9

SYN3-201, Transcript of synapsin III, humanhuman

TSL 5 BASIC

Gene SYN3, Length 972 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYN3-201ENST00000332840 CEP350Q5VT06 3117 aa12.99□□□□□ -0.33
SYN3-201ENST00000332840 C1orf141Q5JVX7 400 aa12.98□□□□□ -0.33
SYN3-201ENST00000332840 DCAF5Q96JK2 942 aa12.98□□□□□ -0.33
SYN3-201ENST00000332840 PKD1L3Q7Z443 1732 aa12.97□□□□□ -0.33
SYN3-201ENST00000332840 CCDC184Q52MB2 194 aa12.97□□□□□ -0.33
SYN3-201ENST00000332840 ZNF530Q6P9A1 599 aaPredicted RBP12.97□□□□□ -0.33
SYN3-201ENST00000332840 MPRIPQ6WCQ1 1025 aa12.97□□□□□ -0.33
SYN3-201ENST00000332840 TMOD3Q9NYL9 352 aa12.97□□□□□ -0.33
SYN3-201ENST00000332840 CCNL1Q9UK58 526 aaPredicted RBP12.97□□□□□ -0.33
SYN3-201ENST00000332840 PAPPAQ13219 1627 aa12.97□□□□□ -0.33
SYN3-201ENST00000332840 MAP2P11137 1827 aaKnown RBP12.97□□□□□ -0.33
SYN3-201ENST00000332840 QSER1Q2KHR3 1735 aa12.96□□□□□ -0.33
SYN3-201ENST00000332840 PALLDQ8WX93 1383 aa12.96□□□□□ -0.33
SYN3-201ENST00000332840 ERVV-2B6SEH9 535 aa12.96□□□□□ -0.33
SYN3-201ENST00000332840 AEBP1Q8IUX7 1158 aa12.96□□□□□ -0.33
SYN3-201ENST00000332840 PELP1Q8IZL8 1130 aaKnown RBP12.96□□□□□ -0.33
SYN3-201ENST00000332840 NUDCQ9Y266 331 aa12.96□□□□□ -0.33
SYN3-201ENST00000332840 C1QTNF8P60827 252 aa12.95□□□□□ -0.34
SYN3-201ENST00000332840 SHANK3Q9BYB0 1731 aa12.95□□□□□ -0.34
SYN3-201ENST00000332840 DOT1LQ8TEK3 1739 aa12.94□□□□□ -0.34
SYN3-201ENST00000332840 PIGBQ92521 554 aa12.94□□□□□ -0.34
SYN3-201ENST00000332840 MTFR1LQ9H019 292 aa12.94□□□□□ -0.34
SYN3-201ENST00000332840 LRRC4BQ9NT99 713 aa12.94□□□□□ -0.34
SYN3-201ENST00000332840 U2SURPO15042 1029 aaKnown RBP12.93□□□□□ -0.34
SYN3-201ENST00000332840 PPP2R1AP30153 589 aa12.93□□□□□ -0.34
SYN3-201ENST00000332840 AKAP4Q5JQC9 854 aa12.93□□□□□ -0.34
SYN3-201ENST00000332840 FAM9BQ8IZU0 186 aa12.93□□□□□ -0.34
SYN3-201ENST00000332840 ARXQ96QS3 562 aa12.93□□□□□ -0.34
SYN3-201ENST00000332840 COL3A1P02461 1466 aaPredicted RBP12.92□□□□□ -0.34
SYN3-201ENST00000332840 CABP4P57796 275 aa12.92□□□□□ -0.34
SYN3-201ENST00000332840 GPR162Q16538 588 aa12.92□□□□□ -0.34
SYN3-201ENST00000332840 ZNF827Q17R98 1081 aa12.92□□□□□ -0.34
SYN3-201ENST00000332840 COL24A1Q17RW2 1714 aa12.92□□□□□ -0.34
SYN3-201ENST00000332840 SLC16A10Q8TF71 515 aa12.92□□□□□ -0.34
SYN3-201ENST00000332840 AKT1S1Q96B36 256 aa12.92□□□□□ -0.34
SYN3-201ENST00000332840 SGIP1Q9BQI5 828 aa12.92□□□□□ -0.34
SYN3-201ENST00000332840 TFCP2L1Q9NZI6 479 aa12.92□□□□□ -0.34
SYN3-201ENST00000332840 HMOX1P09601 288 aa12.91□□□□□ -0.34
SYN3-201ENST00000332840 FLAD1Q8NFF5 587 aa12.91□□□□□ -0.34
SYN3-201ENST00000332840 KCNQ4P56696 695 aa12.9□□□□□ -0.34
SYN3-201ENST00000332840 GAS2L2Q8NHY3 880 aa12.9□□□□□ -0.34
SYN3-201ENST00000332840 PNISRQ8TF01 805 aaKnown RBP12.9□□□□□ -0.34
SYN3-201ENST00000332840 LY75O60449 1722 aa12.9□□□□□ -0.34
SYN3-201ENST00000332840 KDM6AO15550 1401 aaPredicted RBP12.89□□□□□ -0.35
SYN3-201ENST00000332840 LOC102724428A0A0B4J2F2 783 aa12.89□□□□□ -0.35
SYN3-201ENST00000332840 SIK1P57059 783 aa12.89□□□□□ -0.35
SYN3-201ENST00000332840 FOXD4L1Q9NU39 408 aa12.89□□□□□ -0.35
SYN3-201ENST00000332840 HNRNPUQ00839 825 aaKnown RBP eCLIP12.88□□□□□ -0.35
SYN3-201ENST00000332840 AK7Q96M32 723 aa12.88□□□□□ -0.35
SYN3-201ENST00000332840 GIGYF1O75420 1035 aaPredicted RBP12.87□□□□□ -0.35
SYN3-201ENST00000332840 FCHSD2O94868 740 aa12.87□□□□□ -0.35
SYN3-201ENST00000332840 U2AF1L5P0DN76 240 aaPredicted RBP12.87□□□□□ -0.35
SYN3-201ENST00000332840 U2AF1Q01081 240 aaKnown RBP eCLIP12.87□□□□□ -0.35
SYN3-201ENST00000332840 MTHFSDQ2M296 383 aaKnown RBP12.87□□□□□ -0.35
SYN3-201ENST00000332840 NLGN2Q8NFZ4 835 aa12.87□□□□□ -0.35
SYN3-201ENST00000332840 ATG3Q9NT62 314 aa12.87□□□□□ -0.35
SYN3-201ENST00000332840 ASAP1Q9ULH1 1129 aa12.87□□□□□ -0.35
SYN3-201ENST00000332840 TAF1LQ8IZX4 1826 aa12.87□□□□□ -0.35
SYN3-201ENST00000332840 PNPLA7Q6ZV29 1317 aa12.87□□□□□ -0.35
SYN3-201ENST00000332840 TOGARAM1Q9Y4F4 1720 aa12.86□□□□□ -0.35
SYN3-201ENST00000332840 NEFMP07197 916 aa12.86□□□□□ -0.35
SYN3-201ENST00000332840 POLD1P28340 1107 aa12.86□□□□□ -0.35
SYN3-201ENST00000332840 ATP6V1AP38606 617 aa12.86□□□□□ -0.35
SYN3-201ENST00000332840 SLC52A2Q9HAB3 445 aa12.86□□□□□ -0.35
SYN3-201ENST00000332840 MAP3K5Q99683 1374 aa12.85□□□□□ -0.35
SYN3-201ENST00000332840 GNAT3A8MTJ3 354 aa12.85□□□□□ -0.35
SYN3-201ENST00000332840 PRKAR2BP31323 418 aa12.85□□□□□ -0.35
SYN3-201ENST00000332840 NFATC2IPQ8NCF5 419 aa12.85□□□□□ -0.35
SYN3-201ENST00000332840 RSPH6AQ9H0K4 717 aa12.85□□□□□ -0.35
SYN3-201ENST00000332840 PNNQ9H307 717 aaKnown RBP12.85□□□□□ -0.35
SYN3-201ENST00000332840 RNMTO43148 476 aaKnown RBP12.84□□□□□ -0.35
SYN3-201ENST00000332840 SSFA2P28290 1259 aa12.84□□□□□ -0.35
SYN3-201ENST00000332840 IFFO2Q5TF58 517 aa12.84□□□□□ -0.35
SYN3-201ENST00000332840 MRC1P22897 1456 aa12.84□□□□□ -0.35
SYN3-201ENST00000332840 C5P01031 1676 aa12.83□□□□□ -0.35
SYN3-201ENST00000332840 RBM42Q9BTD8 480 aaKnown RBP12.83□□□□□ -0.36
SYN3-201ENST00000332840 ITGB4P16144 1822 aa12.83□□□□□ -0.36
SYN3-201ENST00000332840 TEFQ10587 303 aa12.82□□□□□ -0.36
SYN3-201ENST00000332840 RC3H1Q5TC82 1133 aaKnown RBP12.82□□□□□ -0.36
SYN3-201ENST00000332840 LINC00116Q8NCU8 138 aa12.82□□□□□ -0.36
SYN3-201ENST00000332840 CNTNAP4Q9C0A0 1308 aa12.82□□□□□ -0.36
SYN3-201ENST00000332840 GNPATO15228 680 aa12.81□□□□□ -0.36
SYN3-201ENST00000332840 HTATSF1O43719 755 aaKnown RBP12.81□□□□□ -0.36
SYN3-201ENST00000332840 YBX3P16989 372 aaKnown RBP eCLIP12.81□□□□□ -0.36
SYN3-201ENST00000332840 ITPK1Q13572 414 aa12.81□□□□□ -0.36
SYN3-201ENST00000332840 MSL1Q68DK7 614 aa12.81□□□□□ -0.36
SYN3-201ENST00000332840 COL23A1Q86Y22 540 aaPredicted RBP12.81□□□□□ -0.36
SYN3-201ENST00000332840 TTC5Q8N0Z6 440 aa12.81□□□□□ -0.36
SYN3-201ENST00000332840 RTF1Q92541 710 aaKnown RBP12.81□□□□□ -0.36
SYN3-201ENST00000332840 LGR6Q9HBX8 967 aa12.81□□□□□ -0.36
SYN3-201ENST00000332840 ZBED9Q6R2W3 1325 aa12.81□□□□□ -0.36
SYN3-201ENST00000332840 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.8□□□□□ -0.36
SYN3-201ENST00000332840 PTCD1O75127 700 aaKnown RBP12.8□□□□□ -0.36
SYN3-201ENST00000332840 WDR43Q15061 677 aaKnown RBP eCLIP12.8□□□□□ -0.36
SYN3-201ENST00000332840 VSIG10Q8N0Z9 540 aa12.8□□□□□ -0.36
SYN3-201ENST00000332840 ZNF526Q8TF50 670 aaPredicted RBP12.8□□□□□ -0.36
SYN3-201ENST00000332840 WWC3Q9ULE0 1092 aa12.8□□□□□ -0.36
SYN3-201ENST00000332840 RTCBQ9Y3I0 505 aaKnown RBP12.8□□□□□ -0.36
SYN3-201ENST00000332840 C4BP0C0L5 1744 aa12.79□□□□□ -0.36
SYN3-201ENST00000332840 PHACTR3Q96KR7 559 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms