RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 ZNF530Q6P9A1 599 aaPredicted RBP18.42■□□□□ 0.54
CLCNKA-201ENST00000331433 ARHGEF25Q86VW2 580 aa18.42■□□□□ 0.54
CLCNKA-201ENST00000331433 EXOC6BQ9Y2D4 811 aa18.42■□□□□ 0.54
CLCNKA-201ENST00000331433 SOS1Q07889 1333 aaPredicted RBP18.42■□□□□ 0.54
CLCNKA-201ENST00000331433 EIF2S2P20042 333 aaKnown RBP18.42■□□□□ 0.54
CLCNKA-201ENST00000331433 SNX21Q969T3 373 aa18.42■□□□□ 0.54
CLCNKA-201ENST00000331433 KCNQ3O43525 872 aa18.41■□□□□ 0.54
CLCNKA-201ENST00000331433 MPRIPQ6WCQ1 1025 aa18.41■□□□□ 0.54
CLCNKA-201ENST00000331433 PHRF1Q9P1Y6 1649 aaKnown RBP18.41■□□□□ 0.54
CLCNKA-201ENST00000331433 SDSP20132 328 aa18.41■□□□□ 0.54
CLCNKA-201ENST00000331433 EIF4A1P60842 406 aaKnown RBP18.41■□□□□ 0.54
CLCNKA-201ENST00000331433 RBM42Q9BTD8 480 aaKnown RBP18.41■□□□□ 0.54
CLCNKA-201ENST00000331433 PNMA6EA0A0J9YXQ4 647 aa18.4■□□□□ 0.54
CLCNKA-201ENST00000331433 CD2BP2O95400 341 aaKnown RBP18.4■□□□□ 0.54
CLCNKA-201ENST00000331433 GNAI3P08754 354 aa18.4■□□□□ 0.54
CLCNKA-201ENST00000331433 MED1Q15648 1581 aaPredicted RBP18.4■□□□□ 0.54
CLCNKA-201ENST00000331433 KRT28Q7Z3Y7 464 aa18.39■□□□□ 0.53
CLCNKA-201ENST00000331433 ANKRD24Q8TF21 1146 aa18.39■□□□□ 0.53
CLCNKA-201ENST00000331433 CHMP5Q9NZZ3 219 aa18.39■□□□□ 0.53
CLCNKA-201ENST00000331433 AXIN2Q9Y2T1 843 aa18.39■□□□□ 0.53
CLCNKA-201ENST00000331433 LRRFIP2Q9Y608 721 aaKnown RBP18.39■□□□□ 0.53
CLCNKA-201ENST00000331433 SLIT3O75094 1523 aa18.39■□□□□ 0.53
CLCNKA-201ENST00000331433 PXDNQ92626 1479 aa18.39■□□□□ 0.53
CLCNKA-201ENST00000331433 TEFQ10587 303 aa18.39■□□□□ 0.53
CLCNKA-201ENST00000331433 PLEKHO1Q53GL0 409 aaPredicted RBP18.39■□□□□ 0.53
CLCNKA-201ENST00000331433 AKAP4Q5JQC9 854 aa18.39■□□□□ 0.53
CLCNKA-201ENST00000331433 USP44Q9H0E7 712 aa18.38■□□□□ 0.53
CLCNKA-201ENST00000331433 NCOA3Q9Y6Q9 1424 aa18.37■□□□□ 0.53
CLCNKA-201ENST00000331433 CHPF2Q9P2E5 772 aa18.37■□□□□ 0.53
CLCNKA-201ENST00000331433 BTBD11A6QL63 1104 aa18.37■□□□□ 0.53
CLCNKA-201ENST00000331433 HSP90AB1P08238 724 aaKnown RBP18.37■□□□□ 0.53
CLCNKA-201ENST00000331433 ATP8B2P98198 1209 aa18.37■□□□□ 0.53
CLCNKA-201ENST00000331433 TSHZ3Q63HK5 1081 aa18.37■□□□□ 0.53
CLCNKA-201ENST00000331433 TRPM3Q9HCF6 1732 aaPredicted RBP18.36■□□□□ 0.53
CLCNKA-201ENST00000331433 C1orf167Q5SNV9 1468 aa18.36■□□□□ 0.53
CLCNKA-201ENST00000331433 LMO7Q8WWI1 1683 aa18.36■□□□□ 0.53
CLCNKA-201ENST00000331433 KDM3BQ7LBC6 1761 aa18.36■□□□□ 0.53
CLCNKA-201ENST00000331433 PDE1AP54750 535 aa18.36■□□□□ 0.53
CLCNKA-201ENST00000331433 PXDNLA1KZ92 1463 aa18.36■□□□□ 0.53
CLCNKA-201ENST00000331433 ANXA1P04083 346 aa18.35■□□□□ 0.53
CLCNKA-201ENST00000331433 N4BP2Q86UW6 1770 aaPredicted RBP18.35■□□□□ 0.53
CLCNKA-201ENST00000331433 UBTFL1P0CB47 393 aaPredicted RBP18.35■□□□□ 0.53
CLCNKA-201ENST00000331433 AMOTQ4VCS5 1084 aa18.35■□□□□ 0.53
CLCNKA-201ENST00000331433 C19orf44Q9H6X5 657 aa18.35■□□□□ 0.53
CLCNKA-201ENST00000331433 C1orf141Q5JVX7 400 aa18.34■□□□□ 0.53
CLCNKA-201ENST00000331433 LRRCC1Q9C099 1032 aa18.34■□□□□ 0.53
CLCNKA-201ENST00000331433 NCAPD2Q15021 1401 aa18.34■□□□□ 0.53
CLCNKA-201ENST00000331433 RNMTO43148 476 aaKnown RBP18.34■□□□□ 0.53
CLCNKA-201ENST00000331433 DDIT3P35638 169 aa18.34■□□□□ 0.53
CLCNKA-201ENST00000331433 ZC3H6P61129 1189 aaKnown RBP18.34■□□□□ 0.53
CLCNKA-201ENST00000331433 USP26Q9BXU7 913 aa18.34■□□□□ 0.53
CLCNKA-201ENST00000331433 OSBPL3Q9H4L5 887 aa18.33■□□□□ 0.53
CLCNKA-201ENST00000331433 FOXD4L1Q9NU39 408 aa18.33■□□□□ 0.53
CLCNKA-201ENST00000331433 HOXB7P09629 217 aa18.33■□□□□ 0.52
CLCNKA-201ENST00000331433 MCM4P33991 863 aa18.33■□□□□ 0.52
CLCNKA-201ENST00000331433 CASC1Q6TDU7 716 aa18.33■□□□□ 0.52
CLCNKA-201ENST00000331433 DDX17Q92841 729 aaKnown RBP18.33■□□□□ 0.52
CLCNKA-201ENST00000331433 IBTKQ9P2D0 1353 aaPredicted RBP18.32■□□□□ 0.52
CLCNKA-201ENST00000331433 SRCIN1Q9C0H9 1055 aa18.32■□□□□ 0.52
CLCNKA-201ENST00000331433 PI4KAP2A4QPH2 592 aa18.32■□□□□ 0.52
CLCNKA-201ENST00000331433 K7ELQ4 463 aaPredicted RBP18.32■□□□□ 0.52
CLCNKA-201ENST00000331433 PI4KAP1Q8N8J0 262 aa18.32■□□□□ 0.52
CLCNKA-201ENST00000331433 RGPD5Q99666 1765 aa18.32■□□□□ 0.52
CLCNKA-201ENST00000331433 SALL3Q9BXA9 1300 aa18.32■□□□□ 0.52
CLCNKA-201ENST00000331433 KDM4FA0A1W2PPD8 638 aa18.31■□□□□ 0.52
CLCNKA-201ENST00000331433 KIF1AQ12756 1690 aa18.3■□□□□ 0.52
CLCNKA-201ENST00000331433 EIF5BO60841 1220 aaKnown RBP18.3■□□□□ 0.52
CLCNKA-201ENST00000331433 HSP90AA1P07900 732 aaKnown RBP18.3■□□□□ 0.52
CLCNKA-201ENST00000331433 MX1P20591 662 aa18.3■□□□□ 0.52
CLCNKA-201ENST00000331433 ERBB3P21860 1342 aa18.3■□□□□ 0.52
CLCNKA-201ENST00000331433 NBPF7P0C2Y1 421 aaPredicted RBP18.3■□□□□ 0.52
CLCNKA-201ENST00000331433 DNAAF4Q8WXU2 420 aa18.3■□□□□ 0.52
CLCNKA-201ENST00000331433 PRAMEF22A3QJZ6 481 aa18.29■□□□□ 0.52
CLCNKA-201ENST00000331433 BEND3Q5T5X7 828 aa18.29■□□□□ 0.52
CLCNKA-201ENST00000331433 PPP1R42Q7Z4L9 355 aa18.29■□□□□ 0.52
CLCNKA-201ENST00000331433 TMEM94Q12767 1356 aa18.29■□□□□ 0.52
CLCNKA-201ENST00000331433 ATF3P18847 181 aa18.28■□□□□ 0.52
CLCNKA-201ENST00000331433 RABEP1Q15276 862 aa18.28■□□□□ 0.52
CLCNKA-201ENST00000331433 SSH3Q8TE77 659 aa18.28■□□□□ 0.52
CLCNKA-201ENST00000331433 IL1RAPL2Q9NP60 686 aa18.28■□□□□ 0.52
CLCNKA-201ENST00000331433 CAMTA1Q9Y6Y1 1673 aa18.28■□□□□ 0.52
CLCNKA-201ENST00000331433 PROSER3Q2NL68 480 aa18.28■□□□□ 0.52
CLCNKA-201ENST00000331433 ADCY9O60503 1353 aa18.28■□□□□ 0.52
CLCNKA-201ENST00000331433 ERC2O15083 957 aa18.27■□□□□ 0.52
CLCNKA-201ENST00000331433 GIGYF1O75420 1035 aaPredicted RBP18.27■□□□□ 0.52
CLCNKA-201ENST00000331433 ALS2Q96Q42 1657 aa18.27■□□□□ 0.52
CLCNKA-201ENST00000331433 REC8O95072 547 aa18.27■□□□□ 0.51
CLCNKA-201ENST00000331433 DBF4Q9UBU7 674 aaPredicted RBP18.27■□□□□ 0.51
CLCNKA-201ENST00000331433 MST1RQ04912 1400 aa18.27■□□□□ 0.51
CLCNKA-201ENST00000331433 CHMP4AQ9BY43 222 aa18.26■□□□□ 0.51
CLCNKA-201ENST00000331433 NLRP2Q9NX02 1062 aa18.26■□□□□ 0.51
CLCNKA-201ENST00000331433 OVOS2A0A0G2JMS6 1433 aa18.26■□□□□ 0.51
CLCNKA-201ENST00000331433 SRGAP3O43295 1099 aa18.26■□□□□ 0.51
CLCNKA-201ENST00000331433 SURF6O75683 361 aaKnown RBP18.26■□□□□ 0.51
CLCNKA-201ENST00000331433 IL27Q8NEV9 243 aa18.26■□□□□ 0.51
CLCNKA-201ENST00000331433 TNPO1Q92973 898 aaKnown RBP18.26■□□□□ 0.51
CLCNKA-201ENST00000331433 BRPF3Q9ULD4 1205 aa18.26■□□□□ 0.51
CLCNKA-201ENST00000331433 TUBGCP6Q96RT7 1819 aa18.25■□□□□ 0.51
CLCNKA-201ENST00000331433 POLA2Q14181 598 aa18.25■□□□□ 0.51
CLCNKA-201ENST00000331433 CABLES1Q8TDN4 633 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms