RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 SPATA32Q96LK8 384 aa17.54■□□□□ 0.4
TCOF1-201ENST00000323668 ESYT1Q9BSJ8 1104 aa17.54■□□□□ 0.4
TCOF1-201ENST00000323668 APPP05067 770 aa17.53■□□□□ 0.4
TCOF1-201ENST00000323668 ANAPC15P60006 121 aa17.53■□□□□ 0.4
TCOF1-201ENST00000323668 RALYLQ86SE5 291 aaKnown RBP17.53■□□□□ 0.4
TCOF1-201ENST00000323668 SH2B1Q9NRF2 756 aaPredicted RBP17.53■□□□□ 0.4
TCOF1-201ENST00000323668 ACEP12821 1306 aa17.53■□□□□ 0.4
TCOF1-201ENST00000323668 CEBPZQ03701 1054 aaKnown RBP17.53■□□□□ 0.4
TCOF1-201ENST00000323668 EIF4A2Q14240 407 aaKnown RBP17.53■□□□□ 0.4
TCOF1-201ENST00000323668 FERMT3Q86UX7 667 aa17.53■□□□□ 0.4
TCOF1-201ENST00000323668 PDCL3Q9H2J4 239 aa17.53■□□□□ 0.4
TCOF1-201ENST00000323668 KDM5AP29375 1690 aaKnown RBP17.53■□□□□ 0.4
TCOF1-201ENST00000323668 ZNF771Q7L3S4 317 aaPredicted RBP17.53■□□□□ 0.4
TCOF1-201ENST00000323668 USP25Q9UHP3 1055 aa17.53■□□□□ 0.4
TCOF1-201ENST00000323668 WASHC4Q2M389 1173 aa17.52■□□□□ 0.4
TCOF1-201ENST00000323668 ZGPATQ8N5A5 531 aaKnown RBP17.52■□□□□ 0.4
TCOF1-201ENST00000323668 DNAAF4Q8WXU2 420 aa17.52■□□□□ 0.4
TCOF1-201ENST00000323668 PRIM1P49642 420 aaKnown RBP17.52■□□□□ 0.39
TCOF1-201ENST00000323668 MAP3K11Q16584 847 aa17.52■□□□□ 0.39
TCOF1-201ENST00000323668 PPIP5K1Q6PFW1 1433 aa17.51■□□□□ 0.39
TCOF1-201ENST00000323668 PPP1R42Q7Z4L9 355 aa17.51■□□□□ 0.39
TCOF1-201ENST00000323668 STX6O43752 255 aa17.51■□□□□ 0.39
TCOF1-201ENST00000323668 KRT32Q14532 448 aa17.51■□□□□ 0.39
TCOF1-201ENST00000323668 ZNF396Q96N95 335 aaPredicted RBP17.5■□□□□ 0.39
TCOF1-201ENST00000323668 LARP6Q9BRS8 491 aaKnown RBP17.5■□□□□ 0.39
TCOF1-201ENST00000323668 SPG7Q9UQ90 795 aa17.5■□□□□ 0.39
TCOF1-201ENST00000323668 ANTXR1Q9H6X2 564 aa17.5■□□□□ 0.39
TCOF1-201ENST00000323668 YTHDC2Q9H6S0 1430 aaKnown RBP17.5■□□□□ 0.39
TCOF1-201ENST00000323668 ATP8B2P98198 1209 aa17.49■□□□□ 0.39
TCOF1-201ENST00000323668 DDX54Q8TDD1 881 aaKnown RBP17.49■□□□□ 0.39
TCOF1-201ENST00000323668 IL13P35225 146 aa17.49■□□□□ 0.39
TCOF1-201ENST00000323668 CFAP45Q9UL16 551 aa17.49■□□□□ 0.39
TCOF1-201ENST00000323668 CREBRFQ8IUR6 639 aa17.49■□□□□ 0.39
TCOF1-201ENST00000323668 NPATQ14207 1427 aa17.48■□□□□ 0.39
TCOF1-201ENST00000323668 SCAND2PQ9GZW5 306 aaPredicted RBP17.48■□□□□ 0.39
TCOF1-201ENST00000323668 AKAP17AQ02040 695 aaKnown RBP17.48■□□□□ 0.39
TCOF1-201ENST00000323668 HS1BP3Q53T59 392 aa17.48■□□□□ 0.39
TCOF1-201ENST00000323668 RHPN1Q8TCX5 695 aa17.48■□□□□ 0.39
TCOF1-201ENST00000323668 OTUD7AQ8TE49 926 aaPredicted RBP17.48■□□□□ 0.39
TCOF1-201ENST00000323668 ECHDC1Q9NTX5 307 aa17.48■□□□□ 0.39
TCOF1-201ENST00000323668 ABCC1P33527 1531 aa17.48■□□□□ 0.39
TCOF1-201ENST00000323668 UBE2HP62256 183 aa17.47■□□□□ 0.39
TCOF1-201ENST00000323668 CCAR2Q8N163 923 aaKnown RBP17.47■□□□□ 0.39
TCOF1-201ENST00000323668 PKNOX2Q96KN3 472 aa17.47■□□□□ 0.39
TCOF1-201ENST00000323668 HOOK1Q9UJC3 728 aaKnown RBP17.47■□□□□ 0.39
TCOF1-201ENST00000323668 TRPM2O94759 1503 aa17.47■□□□□ 0.39
TCOF1-201ENST00000323668 UVSSAQ2YD98 709 aa17.47■□□□□ 0.39
TCOF1-201ENST00000323668 USHBP1Q8N6Y0 703 aa17.47■□□□□ 0.39
TCOF1-201ENST00000323668 UBE2Q2Q8WVN8 375 aa17.47■□□□□ 0.39
TCOF1-201ENST00000323668 BCL11BQ9C0K0 894 aaPredicted RBP17.47■□□□□ 0.39
TCOF1-201ENST00000323668 AMOTL2Q9Y2J4 779 aa17.47■□□□□ 0.39
TCOF1-201ENST00000323668 PLEKHF1Q96S99 279 aa17.47■□□□□ 0.39
TCOF1-201ENST00000323668 MYL6BP14649 208 aa17.47■□□□□ 0.39
TCOF1-201ENST00000323668 FMNL2Q96PY5 1086 aa17.47■□□□□ 0.39
TCOF1-201ENST00000323668 USP19O94966 1318 aa17.47■□□□□ 0.39
TCOF1-201ENST00000323668 TRPM1Q7Z4N2 1603 aa17.47■□□□□ 0.39
TCOF1-201ENST00000323668 LRRIQ1Q96JM4 1722 aa17.47■□□□□ 0.39
TCOF1-201ENST00000323668 ME1P48163 572 aa17.46■□□□□ 0.39
TCOF1-201ENST00000323668 CAMK4Q16566 473 aa17.46■□□□□ 0.39
TCOF1-201ENST00000323668 NFXL1Q6ZNB6 911 aa17.46■□□□□ 0.39
TCOF1-201ENST00000323668 BOLA2Q9H3K6 86 aa17.46■□□□□ 0.39
TCOF1-201ENST00000323668 ZKSCAN5Q9Y2L8 839 aa17.46■□□□□ 0.39
TCOF1-201ENST00000323668 TTC37Q6PGP7 1564 aa17.46■□□□□ 0.39
TCOF1-201ENST00000323668 DHX16O60231 1041 aaKnown RBP17.46■□□□□ 0.39
TCOF1-201ENST00000323668 STK38Q15208 465 aa17.46■□□□□ 0.39
TCOF1-201ENST00000323668 PIK3R4Q99570 1358 aa17.46■□□□□ 0.39
TCOF1-201ENST00000323668 RASSF8Q8NHQ8 419 aa17.46■□□□□ 0.39
TCOF1-201ENST00000323668 DBF4Q9UBU7 674 aaPredicted RBP17.46■□□□□ 0.39
TCOF1-201ENST00000323668 PI4KAP2A4QPH2 592 aa17.46■□□□□ 0.39
TCOF1-201ENST00000323668 ADCY5O95622 1261 aa17.46■□□□□ 0.39
TCOF1-201ENST00000323668 PI4KAP1Q8N8J0 262 aa17.46■□□□□ 0.39
TCOF1-201ENST00000323668 CCDC112Q8NEF3 446 aa17.46■□□□□ 0.39
TCOF1-201ENST00000323668 INTS4Q96HW7 963 aaKnown RBP17.45■□□□□ 0.38
TCOF1-201ENST00000323668 ZSCAN22P10073 491 aaPredicted RBP17.45■□□□□ 0.38
TCOF1-201ENST00000323668 HCLS1P14317 486 aaPredicted RBP17.45■□□□□ 0.38
TCOF1-201ENST00000323668 CDC42BPAQ5VT25 1732 aa17.44■□□□□ 0.38
TCOF1-201ENST00000323668 GJB2P29033 226 aa17.44■□□□□ 0.38
TCOF1-201ENST00000323668 USP48Q86UV5 1035 aa17.44■□□□□ 0.38
TCOF1-201ENST00000323668 PREX2Q70Z35 1606 aa17.44■□□□□ 0.38
TCOF1-201ENST00000323668 MTHFSDQ2M296 383 aaKnown RBP17.44■□□□□ 0.38
TCOF1-201ENST00000323668 SMC2O95347 1197 aa17.44■□□□□ 0.38
TCOF1-201ENST00000323668 TATP17735 454 aaPredicted RBP17.44■□□□□ 0.38
TCOF1-201ENST00000323668 SAFBQ15424 915 aaKnown RBP eCLIP17.44■□□□□ 0.38
TCOF1-201ENST00000323668 MNS1Q8NEH6 495 aa17.44■□□□□ 0.38
TCOF1-201ENST00000323668 EVI5LQ96CN4 794 aa17.44■□□□□ 0.38
TCOF1-201ENST00000323668 ADCY10Q96PN6 1610 aa17.44■□□□□ 0.38
TCOF1-201ENST00000323668 MYO5CQ9NQX4 1742 aa17.44■□□□□ 0.38
TCOF1-201ENST00000323668 OFD1O75665 1012 aa17.44■□□□□ 0.38
TCOF1-201ENST00000323668 TPM1P09493 284 aa17.44■□□□□ 0.38
TCOF1-201ENST00000323668 DDX11Q96FC9 970 aa17.44■□□□□ 0.38
TCOF1-201ENST00000323668 CCDC8Q9H0W5 538 aaPredicted RBP17.44■□□□□ 0.38
TCOF1-201ENST00000323668 KCNH5Q8NCM2 988 aa17.43■□□□□ 0.38
TCOF1-201ENST00000323668 MYOM2P54296 1465 aa17.43■□□□□ 0.38
TCOF1-201ENST00000323668 CHL1O00533 1208 aa17.43■□□□□ 0.38
TCOF1-201ENST00000323668 CHMLP26374 656 aa17.43■□□□□ 0.38
TCOF1-201ENST00000323668 RIMS2Q9UQ26 1411 aa17.42■□□□□ 0.38
TCOF1-201ENST00000323668 ABCC4O15439 1325 aa17.42■□□□□ 0.38
TCOF1-201ENST00000323668 FSD2A1L4K1 749 aa17.42■□□□□ 0.38
TCOF1-201ENST00000323668 LARP1Q6PKG0 1096 aaKnown RBP17.42■□□□□ 0.38
TCOF1-201ENST00000323668 ARGLU1Q9NWB6 273 aaPredicted RBP17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms