RNA–Protein interactions for RNA: ENST00000318007.9

PDLIM5-202, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 1,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-202ENST00000318007 KCNQ3O43525 872 aa20.02■□□□□ 0.8
PDLIM5-202ENST00000318007 SLC52A2Q9HAB3 445 aa20.02■□□□□ 0.8
PDLIM5-202ENST00000318007 IFT57Q9NWB7 429 aa20.02■□□□□ 0.8
PDLIM5-202ENST00000318007 GNAI1P63096 354 aa20.01■□□□□ 0.79
PDLIM5-202ENST00000318007 TAF7Q15545 349 aaPredicted RBP20.01■□□□□ 0.79
PDLIM5-202ENST00000318007 MYH16Q9H6N6 1097 aa20.01■□□□□ 0.79
PDLIM5-202ENST00000318007 PRIM1P49642 420 aaKnown RBP20.01■□□□□ 0.79
PDLIM5-202ENST00000318007 PLEKHG2Q9H7P9 1386 aa20.01■□□□□ 0.79
PDLIM5-202ENST00000318007 DOT1LQ8TEK3 1739 aa20■□□□□ 0.79
PDLIM5-202ENST00000318007 KCNQ2O43526 872 aa20■□□□□ 0.79
PDLIM5-202ENST00000318007 ONECUT3O60422 494 aaPredicted RBP20■□□□□ 0.79
PDLIM5-202ENST00000318007 EXOSC9Q06265 439 aaKnown RBP20■□□□□ 0.79
PDLIM5-202ENST00000318007 NCBP3Q53F19 620 aaKnown RBP20■□□□□ 0.79
PDLIM5-202ENST00000318007 BRWD3Q6RI45 1802 aa20■□□□□ 0.79
PDLIM5-202ENST00000318007 NKX1-1Q15270 411 aaPredicted RBP19.99■□□□□ 0.79
PDLIM5-202ENST00000318007 RGS12O14924 1447 aa19.99■□□□□ 0.79
PDLIM5-202ENST00000318007 TMOD3Q9NYL9 352 aa19.99■□□□□ 0.79
PDLIM5-202ENST00000318007 IL16Q14005 1332 aa19.98■□□□□ 0.79
PDLIM5-202ENST00000318007 ZNF853P0CG23 659 aa19.98■□□□□ 0.79
PDLIM5-202ENST00000318007 PTF1AQ7RTS3 328 aa19.98■□□□□ 0.79
PDLIM5-202ENST00000318007 CHL1O00533 1208 aa19.97■□□□□ 0.79
PDLIM5-202ENST00000318007 KRT27Q7Z3Y8 459 aa19.97■□□□□ 0.79
PDLIM5-202ENST00000318007 ADAMTS7Q9UKP4 1686 aa19.97■□□□□ 0.79
PDLIM5-202ENST00000318007 TSPYL6Q8N831 410 aa19.97■□□□□ 0.79
PDLIM5-202ENST00000318007 TRMT2AQ8IZ69 625 aaKnown RBP19.96■□□□□ 0.79
PDLIM5-202ENST00000318007 PIGBQ92521 554 aa19.96■□□□□ 0.79
PDLIM5-202ENST00000318007 TCERG1O14776 1098 aaKnown RBP19.95■□□□□ 0.78
PDLIM5-202ENST00000318007 C8orf58Q8NAV2 365 aa19.95■□□□□ 0.78
PDLIM5-202ENST00000318007 NECTIN2Q92692 538 aa19.95■□□□□ 0.78
PDLIM5-202ENST00000318007 ERVV-2B6SEH9 535 aa19.95■□□□□ 0.78
PDLIM5-202ENST00000318007 PTCD1O75127 700 aaKnown RBP19.95■□□□□ 0.78
PDLIM5-202ENST00000318007 BCL2L13Q9BXK5 485 aa19.95■□□□□ 0.78
PDLIM5-202ENST00000318007 SIPA1L3O60292 1781 aaPredicted RBP19.94■□□□□ 0.78
PDLIM5-202ENST00000318007 ASAP1Q9ULH1 1129 aa19.94■□□□□ 0.78
PDLIM5-202ENST00000318007 ITGB4P16144 1822 aa19.94■□□□□ 0.78
PDLIM5-202ENST00000318007 ZNF790Q6PG37 636 aa19.94■□□□□ 0.78
PDLIM5-202ENST00000318007 TTC5Q8N0Z6 440 aa19.94■□□□□ 0.78
PDLIM5-202ENST00000318007 MRC1P22897 1456 aa19.93■□□□□ 0.78
PDLIM5-202ENST00000318007 PRAMEF22A3QJZ6 481 aa19.93■□□□□ 0.78
PDLIM5-202ENST00000318007 TWISTNBQ3B726 338 aaPredicted RBP19.91■□□□□ 0.78
PDLIM5-202ENST00000318007 KDM3BQ7LBC6 1761 aa19.9■□□□□ 0.78
PDLIM5-202ENST00000318007 BCL9O00512 1426 aa19.9■□□□□ 0.78
PDLIM5-202ENST00000318007 EIF4A1P60842 406 aaKnown RBP19.9■□□□□ 0.78
PDLIM5-202ENST00000318007 ZNF496Q96IT1 587 aaPredicted RBP19.9■□□□□ 0.78
PDLIM5-202ENST00000318007 RBM42Q9BTD8 480 aaKnown RBP19.9■□□□□ 0.78
PDLIM5-202ENST00000318007 TRIM37O94972 964 aa19.89■□□□□ 0.77
PDLIM5-202ENST00000318007 EIF2S2P20042 333 aaKnown RBP19.88■□□□□ 0.77
PDLIM5-202ENST00000318007 ATG3Q9NT62 314 aa19.88■□□□□ 0.77
PDLIM5-202ENST00000318007 RCAN3Q9UKA8 241 aa19.88■□□□□ 0.77
PDLIM5-202ENST00000318007 KCNQ4P56696 695 aa19.87■□□□□ 0.77
PDLIM5-202ENST00000318007 SUPT16HQ9Y5B9 1047 aaKnown RBP19.87■□□□□ 0.77
PDLIM5-202ENST00000318007 BCAR3O75815 825 aa19.86■□□□□ 0.77
PDLIM5-202ENST00000318007 PIP4K2AP48426 406 aaPredicted RBP19.85■□□□□ 0.77
PDLIM5-202ENST00000318007 FAM196AQ6ZSG2 479 aa19.85■□□□□ 0.77
PDLIM5-202ENST00000318007 VAMP4O75379 141 aa19.84■□□□□ 0.77
PDLIM5-202ENST00000318007 PLIN1O60240 522 aa19.84■□□□□ 0.77
PDLIM5-202ENST00000318007 FMNL2Q96PY5 1086 aa19.84■□□□□ 0.77
PDLIM5-202ENST00000318007 BABAM1Q9NWV8 329 aa19.83■□□□□ 0.77
PDLIM5-202ENST00000318007 SBF2Q86WG5 1849 aa19.83■□□□□ 0.77
PDLIM5-202ENST00000318007 PAPPAQ13219 1627 aa19.83■□□□□ 0.77
PDLIM5-202ENST00000318007 GIGYF1O75420 1035 aaPredicted RBP19.83■□□□□ 0.76
PDLIM5-202ENST00000318007 IRX6P78412 446 aaPredicted RBP19.83■□□□□ 0.76
PDLIM5-202ENST00000318007 FRAT1Q92837 279 aaPredicted RBP19.83■□□□□ 0.76
PDLIM5-202ENST00000318007 SMC4Q9NTJ3 1288 aa19.83■□□□□ 0.76
PDLIM5-202ENST00000318007 KCPQ6ZWJ8 1503 aa19.82■□□□□ 0.76
PDLIM5-202ENST00000318007 C5P01031 1676 aa19.82■□□□□ 0.76
PDLIM5-202ENST00000318007 NHSQ6T4R5 1651 aa19.82■□□□□ 0.76
PDLIM5-202ENST00000318007 BTAF1O14981 1849 aa19.82■□□□□ 0.76
PDLIM5-202ENST00000318007 PALLDQ8WX93 1383 aa19.82■□□□□ 0.76
PDLIM5-202ENST00000318007 ANXA1P04083 346 aa19.82■□□□□ 0.76
PDLIM5-202ENST00000318007 HDGFL1Q5TGJ6 251 aa19.82■□□□□ 0.76
PDLIM5-202ENST00000318007 SSH1Q8WYL5 1049 aa19.82■□□□□ 0.76
PDLIM5-202ENST00000318007 RARSP54136 660 aaKnown RBP19.81■□□□□ 0.76
PDLIM5-202ENST00000318007 USP16Q9Y5T5 823 aa19.81■□□□□ 0.76
PDLIM5-202ENST00000318007 SLC4A9Q96Q91 983 aa19.81■□□□□ 0.76
PDLIM5-202ENST00000318007 HEG1Q9ULI3 1381 aa19.8■□□□□ 0.76
PDLIM5-202ENST00000318007 UBR2Q8IWV8 1755 aa19.79■□□□□ 0.76
PDLIM5-202ENST00000318007 SNRPA1P09661 255 aaKnown RBP19.79■□□□□ 0.76
PDLIM5-202ENST00000318007 DNAJC10Q8IXB1 793 aa19.79■□□□□ 0.76
PDLIM5-202ENST00000318007 BCL11BQ9C0K0 894 aaPredicted RBP19.79■□□□□ 0.76
PDLIM5-202ENST00000318007 ATP6V1AP38606 617 aa19.78■□□□□ 0.76
PDLIM5-202ENST00000318007 CHPF2Q9P2E5 772 aa19.78■□□□□ 0.76
PDLIM5-202ENST00000318007 ZNF330Q9Y3S2 320 aaPredicted RBP19.78■□□□□ 0.76
PDLIM5-202ENST00000318007 MYL6BP14649 208 aa19.77■□□□□ 0.76
PDLIM5-202ENST00000318007 CANXP27824 592 aaKnown RBP19.77■□□□□ 0.76
PDLIM5-202ENST00000318007 LOC102724428A0A0B4J2F2 783 aa19.77■□□□□ 0.75
PDLIM5-202ENST00000318007 SIK1P57059 783 aa19.77■□□□□ 0.75
PDLIM5-202ENST00000318007 SLC4A2P04920 1241 aa19.76■□□□□ 0.75
PDLIM5-202ENST00000318007 PROSER3Q2NL68 480 aa19.76■□□□□ 0.75
PDLIM5-202ENST00000318007 APBA3O96018 575 aa19.75■□□□□ 0.75
PDLIM5-202ENST00000318007 TNNQ9UQP3 1299 aa19.75■□□□□ 0.75
PDLIM5-202ENST00000318007 CCDC30Q5VVM6 783 aa19.75■□□□□ 0.75
PDLIM5-202ENST00000318007 STK31Q9BXU1 1019 aa19.75■□□□□ 0.75
PDLIM5-202ENST00000318007 A1BGP04217 495 aa19.74■□□□□ 0.75
PDLIM5-202ENST00000318007 CT47B1P0C2W7 299 aaPredicted RBP19.74■□□□□ 0.75
PDLIM5-202ENST00000318007 ITPK1Q13572 414 aa19.74■□□□□ 0.75
PDLIM5-202ENST00000318007 CLUAP1Q96AJ1 413 aa19.74■□□□□ 0.75
PDLIM5-202ENST00000318007 G2E3Q7L622 706 aa19.74■□□□□ 0.75
PDLIM5-202ENST00000318007 SMARCC1Q92922 1105 aaPredicted RBP19.74■□□□□ 0.75
PDLIM5-202ENST00000318007 PHAXQ9H814 394 aaKnown RBP19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms