RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 DHX16O60231 1041 aaKnown RBP8.08□□□□□ -1.12
ZNF540-201ENST00000316433 ZNF853P0CG23 659 aa8.08□□□□□ -1.12
ZNF540-201ENST00000316433 ZKSCAN2Q63HK3 967 aa8.08□□□□□ -1.12
ZNF540-201ENST00000316433 GCC1Q96CN9 775 aa8.08□□□□□ -1.12
ZNF540-201ENST00000316433 ZBTB40Q9NUA8 1239 aa8.08□□□□□ -1.12
ZNF540-201ENST00000316433 IRF6O14896 467 aa8.07□□□□□ -1.12
ZNF540-201ENST00000316433 NUCB1Q02818 461 aa8.07□□□□□ -1.12
ZNF540-201ENST00000316433 KLHL40Q2TBA0 621 aa8.07□□□□□ -1.12
ZNF540-201ENST00000316433 ICE2Q659A1 982 aa8.07□□□□□ -1.12
ZNF540-201ENST00000316433 ARID3CA6NKF2 412 aa8.07□□□□□ -1.12
ZNF540-201ENST00000316433 BRMS1Q9HCU9 246 aa8.07□□□□□ -1.12
ZNF540-201ENST00000316433 CEP170BQ9Y4F5 1589 aaPredicted RBP8.07□□□□□ -1.12
ZNF540-201ENST00000316433 ZBTB7CA1YPR0 619 aa8.06□□□□□ -1.12
ZNF540-201ENST00000316433 FCHSD2O94868 740 aa8.06□□□□□ -1.12
ZNF540-201ENST00000316433 RAD51AP2Q09MP3 1159 aa8.06□□□□□ -1.12
ZNF540-201ENST00000316433 ZNF592Q92610 1267 aa8.06□□□□□ -1.12
ZNF540-201ENST00000316433 RBSNQ9H1K0 784 aa8.06□□□□□ -1.12
ZNF540-201ENST00000316433 SSH2Q76I76 1423 aa8.06□□□□□ -1.12
ZNF540-201ENST00000316433 CFAP70Q5T0N1 1121 aa8.06□□□□□ -1.12
ZNF540-201ENST00000316433 CREBRFQ8IUR6 639 aa8.06□□□□□ -1.12
ZNF540-201ENST00000316433 TCP11L2Q8N4U5 519 aa8.06□□□□□ -1.12
ZNF540-201ENST00000316433 RASSF4Q9H2L5 321 aa8.06□□□□□ -1.12
ZNF540-201ENST00000316433 DDX41Q9UJV9 622 aaKnown RBP8.06□□□□□ -1.12
ZNF540-201ENST00000316433 TSPOAP1O95153 1857 aa8.06□□□□□ -1.12
ZNF540-201ENST00000316433 PTPRUQ92729 1446 aa8.06□□□□□ -1.12
ZNF540-201ENST00000316433 RAB3GAP1Q15042 981 aa8.06□□□□□ -1.12
ZNF540-201ENST00000316433 HSCBQ8IWL3 235 aa8.06□□□□□ -1.12
ZNF540-201ENST00000316433 CTNNA3Q9UI47 895 aa8.06□□□□□ -1.12
ZNF540-201ENST00000316433 SH3BP1Q9Y3L3 701 aa8.06□□□□□ -1.12
ZNF540-201ENST00000316433 MORC2Q9Y6X9 1032 aaPredicted RBP8.06□□□□□ -1.12
ZNF540-201ENST00000316433 RGS12O14924 1447 aa8.05□□□□□ -1.12
ZNF540-201ENST00000316433 KDM3BQ7LBC6 1761 aa8.05□□□□□ -1.12
ZNF540-201ENST00000316433 SLIT1O75093 1534 aa8.05□□□□□ -1.12
ZNF540-201ENST00000316433 GOLIM4O00461 696 aa8.05□□□□□ -1.12
ZNF540-201ENST00000316433 IPO8O15397 1037 aaKnown RBP8.05□□□□□ -1.12
ZNF540-201ENST00000316433 GUCY2CP25092 1073 aa8.05□□□□□ -1.12
ZNF540-201ENST00000316433 RGL3Q3MIN7 710 aa8.05□□□□□ -1.12
ZNF540-201ENST00000316433 PIBF1Q8WXW3 757 aa8.05□□□□□ -1.12
ZNF540-201ENST00000316433 SLC26A8Q96RN1 970 aa8.05□□□□□ -1.12
ZNF540-201ENST00000316433 TRIM35Q9UPQ4 493 aa8.05□□□□□ -1.12
ZNF540-201ENST00000316433 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.05□□□□□ -1.12
ZNF540-201ENST00000316433 DDX49Q9Y6V7 483 aaKnown RBP8.05□□□□□ -1.12
ZNF540-201ENST00000316433 USP31Q70CQ4 1352 aa8.05□□□□□ -1.12
ZNF540-201ENST00000316433 GOLGA6L22H0YM25 854 aa8.05□□□□□ -1.12
ZNF540-201ENST00000316433 SEMA3FQ13275 785 aa8.05□□□□□ -1.12
ZNF540-201ENST00000316433 ATF7IPQ6VMQ6 1270 aa8.05□□□□□ -1.12
ZNF540-201ENST00000316433 DZIP1LQ8IYY4 767 aaKnown RBP8.05□□□□□ -1.12
ZNF540-201ENST00000316433 TMX1Q9H3N1 280 aa8.05□□□□□ -1.12
ZNF540-201ENST00000316433 PCDHB15Q9Y5E8 787 aa8.05□□□□□ -1.12
ZNF540-201ENST00000316433 PEAK1Q9H792 1746 aa8.05□□□□□ -1.12
ZNF540-201ENST00000316433 OVOS2A0A0J9YW53 1432 aa8.05□□□□□ -1.12
ZNF540-201ENST00000316433 OVOS2Q6IE36 1432 aa8.05□□□□□ -1.12
ZNF540-201ENST00000316433 BCAR3O75815 825 aa8.04□□□□□ -1.12
ZNF540-201ENST00000316433 NOLC1Q14978 699 aaKnown RBP eCLIP8.04□□□□□ -1.12
ZNF540-201ENST00000316433 AFAP1Q8N556 730 aa8.04□□□□□ -1.12
ZNF540-201ENST00000316433 PDZRN3Q9UPQ7 1066 aa8.04□□□□□ -1.12
ZNF540-201ENST00000316433 DMRT2Q9Y5R5 561 aa8.04□□□□□ -1.12
ZNF540-201ENST00000316433 CTIFO43310 598 aaKnown RBP8.04□□□□□ -1.12
ZNF540-201ENST00000316433 HNRNPH2P55795 449 aaKnown RBP8.04□□□□□ -1.12
ZNF540-201ENST00000316433 MAP2K1Q02750 393 aaPredicted RBP8.04□□□□□ -1.12
ZNF540-201ENST00000316433 FKBP5Q13451 457 aaPredicted RBP8.04□□□□□ -1.12
ZNF540-201ENST00000316433 MORC1Q86VD1 984 aa8.04□□□□□ -1.12
ZNF540-201ENST00000316433 IFT57Q9NWB7 429 aa8.04□□□□□ -1.12
ZNF540-201ENST00000316433 OVOS2A0A0G2JMS6 1433 aa8.04□□□□□ -1.12
ZNF540-201ENST00000316433 LMO7Q8WWI1 1683 aa8.04□□□□□ -1.12
ZNF540-201ENST00000316433 GPATCH11Q8N954 259 aa8.04□□□□□ -1.12
ZNF540-201ENST00000316433 DIAPH3Q9NSV4 1193 aa8.04□□□□□ -1.12
ZNF540-201ENST00000316433 DONSONQ9NYP3 566 aa8.04□□□□□ -1.12
ZNF540-201ENST00000316433 RAI14Q9P0K7 980 aa8.04□□□□□ -1.12
ZNF540-201ENST00000316433 ATP10DQ9P241 1426 aa8.04□□□□□ -1.12
ZNF540-201ENST00000316433 KRT222Q8N1A0 295 aa8.03□□□□□ -1.12
ZNF540-201ENST00000316433 RNF217Q8TC41 542 aa8.03□□□□□ -1.12
ZNF540-201ENST00000316433 STK26Q9P289 416 aa8.03□□□□□ -1.12
ZNF540-201ENST00000316433 ARHGAP23Q9P227 1491 aa8.03□□□□□ -1.12
ZNF540-201ENST00000316433 ZSCAN23Q3MJ62 389 aa8.03□□□□□ -1.12
ZNF540-201ENST00000316433 RIOK3O14730 519 aaKnown RBP8.02□□□□□ -1.13
ZNF540-201ENST00000316433 KIF3BO15066 747 aa8.02□□□□□ -1.13
ZNF540-201ENST00000316433 CYP2E1P05181 493 aaPredicted RBP8.02□□□□□ -1.13
ZNF540-201ENST00000316433 TMPOP42166 694 aaKnown RBP8.02□□□□□ -1.13
ZNF540-201ENST00000316433 SIPA1L3O60292 1781 aaPredicted RBP8.02□□□□□ -1.13
ZNF540-201ENST00000316433 CHAF1AQ13111 956 aaPredicted RBP8.02□□□□□ -1.13
ZNF540-201ENST00000316433 OS9Q13438 667 aaPredicted RBP8.02□□□□□ -1.13
ZNF540-201ENST00000316433 TERF2IPQ9NYB0 399 aa8.02□□□□□ -1.13
ZNF540-201ENST00000316433 NCAPD2Q15021 1401 aa8.02□□□□□ -1.13
ZNF540-201ENST00000316433 RLBP1P12271 317 aa8.01□□□□□ -1.13
ZNF540-201ENST00000316433 PRIM1P49642 420 aaKnown RBP8.01□□□□□ -1.13
ZNF540-201ENST00000316433 SYCP1Q15431 976 aa8.01□□□□□ -1.13
ZNF540-201ENST00000316433 MPNDQ8N594 471 aa8.01□□□□□ -1.13
ZNF540-201ENST00000316433 SPTLC3Q9NUV7 552 aa8.01□□□□□ -1.13
ZNF540-201ENST00000316433 BABAM1Q9NWV8 329 aa8.01□□□□□ -1.13
ZNF540-201ENST00000316433 PIK3C2AO00443 1686 aa8.01□□□□□ -1.13
ZNF540-201ENST00000316433 MST1RQ04912 1400 aa8.01□□□□□ -1.13
ZNF540-201ENST00000316433 RAD50Q92878 1312 aa8.01□□□□□ -1.13
ZNF540-201ENST00000316433 CFAP65Q6ZU64 1925 aaKnown RBP8.01□□□□□ -1.13
ZNF540-201ENST00000316433 KIF1CO43896 1103 aaKnown RBP8.01□□□□□ -1.13
ZNF540-201ENST00000316433 CASQ1P31415 396 aa8.01□□□□□ -1.13
ZNF540-201ENST00000316433 CYP2C19P33261 490 aa8.01□□□□□ -1.13
ZNF540-201ENST00000316433 FBLN2P98095 1184 aa8.01□□□□□ -1.13
ZNF540-201ENST00000316433 NCBP1Q09161 790 aaKnown RBP8.01□□□□□ -1.13
ZNF540-201ENST00000316433 C22orf23Q9BZE7 217 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms