RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 SNW1Q13573 536 aaKnown RBP16.09■□□□□ 0.17
CSPG4-201ENST00000308508 PRKAR2BP31323 418 aa16.09■□□□□ 0.17
CSPG4-201ENST00000308508 PLEKHO1Q53GL0 409 aaPredicted RBP16.09■□□□□ 0.17
CSPG4-201ENST00000308508 SH2B1Q9NRF2 756 aaPredicted RBP16.09■□□□□ 0.17
CSPG4-201ENST00000308508 FYCO1Q9BQS8 1478 aa16.09■□□□□ 0.17
CSPG4-201ENST00000308508 ZNF76P36508 570 aa16.09■□□□□ 0.17
CSPG4-201ENST00000308508 HDGFL1Q5TGJ6 251 aa16.08■□□□□ 0.16
CSPG4-201ENST00000308508 DDX12PQ92771 950 aa16.08■□□□□ 0.16
CSPG4-201ENST00000308508 HSF2BPO75031 334 aa16.08■□□□□ 0.16
CSPG4-201ENST00000308508 EHBP1Q8NDI1 1231 aa16.08■□□□□ 0.16
CSPG4-201ENST00000308508 NLRP2Q9NX02 1062 aa16.08■□□□□ 0.16
CSPG4-201ENST00000308508 FKBP4Q02790 459 aaKnown RBP eCLIP16.08■□□□□ 0.16
CSPG4-201ENST00000308508 CTNNBL1Q8WYA6 563 aaPredicted RBP16.08■□□□□ 0.16
CSPG4-201ENST00000308508 DDX23Q9BUQ8 820 aaKnown RBP16.08■□□□□ 0.16
CSPG4-201ENST00000308508 SIL1Q9H173 461 aa16.08■□□□□ 0.16
CSPG4-201ENST00000308508 TOP2AP11388 1531 aaKnown RBP16.08■□□□□ 0.16
CSPG4-201ENST00000308508 CAVIN2O95810 425 aa16.07■□□□□ 0.16
CSPG4-201ENST00000308508 CEP135Q66GS9 1140 aa16.07■□□□□ 0.16
CSPG4-201ENST00000308508 KLHL10Q6JEL2 608 aa16.07■□□□□ 0.16
CSPG4-201ENST00000308508 U3KPZ7 1027 aaPredicted RBP16.07■□□□□ 0.16
CSPG4-201ENST00000308508 MAATS1Q7Z4T9 603 aa16.07■□□□□ 0.16
CSPG4-201ENST00000308508 TDRD9Q8NDG6 1382 aaKnown RBP16.07■□□□□ 0.16
CSPG4-201ENST00000308508 TRMT1Q9NXH9 659 aaKnown RBP16.07■□□□□ 0.16
CSPG4-201ENST00000308508 STX1AQ16623 288 aa16.07■□□□□ 0.16
CSPG4-201ENST00000308508 ZMYND15Q9H091 742 aa16.07■□□□□ 0.16
CSPG4-201ENST00000308508 WIZO95785 1651 aa16.07■□□□□ 0.16
CSPG4-201ENST00000308508 NSRP1Q9H0G5 558 aaKnown RBP16.07■□□□□ 0.16
CSPG4-201ENST00000308508 SPDYE4A6NLX3 237 aa16.06■□□□□ 0.16
CSPG4-201ENST00000308508 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.06■□□□□ 0.16
CSPG4-201ENST00000308508 FERP16591 822 aa16.06■□□□□ 0.16
CSPG4-201ENST00000308508 PNISRQ8TF01 805 aaKnown RBP16.06■□□□□ 0.16
CSPG4-201ENST00000308508 FBF1Q8TES7 1133 aa16.06■□□□□ 0.16
CSPG4-201ENST00000308508 CCDC150Q8NCX0 1101 aa16.06■□□□□ 0.16
CSPG4-201ENST00000308508 GRIPAP1Q4V328 841 aa16.06■□□□□ 0.16
CSPG4-201ENST00000308508 ANKS4BQ8N8V4 417 aa16.06■□□□□ 0.16
CSPG4-201ENST00000308508 CCDC171Q6TFL3 1326 aa16.05■□□□□ 0.16
CSPG4-201ENST00000308508 ZNF428Q96B54 188 aa16.05■□□□□ 0.16
CSPG4-201ENST00000308508 DDX19AQ9NUU7 478 aaKnown RBP16.05■□□□□ 0.16
CSPG4-201ENST00000308508 HOMER2Q9NSB8 354 aa16.05■□□□□ 0.16
CSPG4-201ENST00000308508 ADCY5O95622 1261 aa16.05■□□□□ 0.16
CSPG4-201ENST00000308508 SEC63Q9UGP8 760 aaKnown RBP16.05■□□□□ 0.16
CSPG4-201ENST00000308508 CCDC196A0A1B0GTZ2 297 aa16.05■□□□□ 0.16
CSPG4-201ENST00000308508 RAB34Q9BZG1 259 aa16.05■□□□□ 0.16
CSPG4-201ENST00000308508 USP25Q9UHP3 1055 aa16.05■□□□□ 0.16
CSPG4-201ENST00000308508 KIF20AO95235 890 aa16.04■□□□□ 0.16
CSPG4-201ENST00000308508 TSR2Q969E8 191 aaKnown RBP16.04■□□□□ 0.16
CSPG4-201ENST00000308508 CABP2Q9NPB3 220 aa16.04■□□□□ 0.16
CSPG4-201ENST00000308508 CTNNA2P26232 953 aa16.04■□□□□ 0.16
CSPG4-201ENST00000308508 TNIP1Q15025 636 aa16.04■□□□□ 0.16
CSPG4-201ENST00000308508 SRGAP3O43295 1099 aa16.04■□□□□ 0.16
CSPG4-201ENST00000308508 MPHOSPH8Q99549 860 aa16.04■□□□□ 0.16
CSPG4-201ENST00000308508 IRX3P78415 501 aaPredicted RBP16.04■□□□□ 0.16
CSPG4-201ENST00000308508 TDRD12Q587J7 1177 aaKnown RBP16.04■□□□□ 0.16
CSPG4-201ENST00000308508 MSL1Q68DK7 614 aa16.04■□□□□ 0.16
CSPG4-201ENST00000308508 ARFGAP3Q9NP61 516 aa16.04■□□□□ 0.16
CSPG4-201ENST00000308508 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.04■□□□□ 0.16
CSPG4-201ENST00000308508 V9GYY5 206 aaPredicted RBP16.04■□□□□ 0.16
CSPG4-201ENST00000308508 POLA1P09884 1462 aaPredicted RBP16.04■□□□□ 0.16
CSPG4-201ENST00000308508 MPHOSPH10O00566 681 aaKnown RBP16.04■□□□□ 0.16
CSPG4-201ENST00000308508 UVSSAQ2YD98 709 aa16.04■□□□□ 0.16
CSPG4-201ENST00000308508 CKAP4Q07065 602 aaKnown RBP16.03■□□□□ 0.16
CSPG4-201ENST00000308508 CCDC6Q16204 474 aa16.03■□□□□ 0.16
CSPG4-201ENST00000308508 SREK1Q8WXA9 508 aaKnown RBP16.03■□□□□ 0.16
CSPG4-201ENST00000308508 ZNF287Q9HBT7 754 aa16.03■□□□□ 0.16
CSPG4-201ENST00000308508 HMGB1P09429 215 aaKnown RBP16.03■□□□□ 0.16
CSPG4-201ENST00000308508 CCDC155Q8N6L0 562 aa16.03■□□□□ 0.16
CSPG4-201ENST00000308508 TMC6Q7Z403 805 aa16.03■□□□□ 0.16
CSPG4-201ENST00000308508 SEPT6Q14141 434 aa16.02■□□□□ 0.16
CSPG4-201ENST00000308508 C8orf76Q96K31 380 aa16.02■□□□□ 0.16
CSPG4-201ENST00000308508 DNA2P51530 1060 aa16.02■□□□□ 0.16
CSPG4-201ENST00000308508 IFI16Q16666 785 aaKnown RBP16.02■□□□□ 0.16
CSPG4-201ENST00000308508 CNNM3Q8NE01 707 aa16.02■□□□□ 0.16
CSPG4-201ENST00000308508 JADE2Q9NQC1 790 aa16.02■□□□□ 0.16
CSPG4-201ENST00000308508 MACROD2A1Z1Q3 448 aa16.02■□□□□ 0.16
CSPG4-201ENST00000308508 RPAP2Q8IXW5 612 aaPredicted RBP16.02■□□□□ 0.16
CSPG4-201ENST00000308508 IKBKGQ9Y6K9 419 aa16.02■□□□□ 0.16
CSPG4-201ENST00000308508 FGD6Q6ZV73 1430 aa16.02■□□□□ 0.15
CSPG4-201ENST00000308508 MROH2BQ7Z745 1585 aa16.02■□□□□ 0.15
CSPG4-201ENST00000308508 FAM114A1Q8IWE2 563 aa16.01■□□□□ 0.15
CSPG4-201ENST00000308508 NLRP6P59044 892 aa16.01■□□□□ 0.15
CSPG4-201ENST00000308508 DDX46Q7L014 1031 aaKnown RBP16.01■□□□□ 0.15
CSPG4-201ENST00000308508 CETN1Q12798 172 aa16.01■□□□□ 0.15
CSPG4-201ENST00000308508 PLEKHH2Q8IVE3 1493 aa16.01■□□□□ 0.15
CSPG4-201ENST00000308508 TSNARE1Q96NA8 513 aa16.01■□□□□ 0.15
CSPG4-201ENST00000308508 RAB11FIP3O75154 756 aa16.01■□□□□ 0.15
CSPG4-201ENST00000308508 FERMT3Q86UX7 667 aa16.01■□□□□ 0.15
CSPG4-201ENST00000308508 GTPBP4Q9BZE4 634 aaKnown RBP16■□□□□ 0.15
CSPG4-201ENST00000308508 FAM177BA6PVY3 158 aa16■□□□□ 0.15
CSPG4-201ENST00000308508 ATF3P18847 181 aa16■□□□□ 0.15
CSPG4-201ENST00000308508 GPRASP1Q5JY77 1395 aa16■□□□□ 0.15
CSPG4-201ENST00000308508 TMCO5BA8MYB1 307 aa16■□□□□ 0.15
CSPG4-201ENST00000308508 A0A1W2PRG0 241 aa16■□□□□ 0.15
CSPG4-201ENST00000308508 TMEM266Q2M3C6 531 aa16■□□□□ 0.15
CSPG4-201ENST00000308508 PPP4R3AQ6IN85 833 aa16■□□□□ 0.15
CSPG4-201ENST00000308508 PPP1R14CQ8TAE6 165 aa16■□□□□ 0.15
CSPG4-201ENST00000308508 TNPO1Q92973 898 aaKnown RBP16■□□□□ 0.15
CSPG4-201ENST00000308508 PYM1Q9BRP8 204 aaKnown RBP16■□□□□ 0.15
CSPG4-201ENST00000308508 AIDAQ96BJ3 306 aa16■□□□□ 0.15
CSPG4-201ENST00000308508 STMN4Q9H169 189 aaPredicted RBP16■□□□□ 0.15
CSPG4-201ENST00000308508 CCDC12Q8WUD4 166 aaPredicted RBP15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 249.9 ms