RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 THSD7AQ9UPZ6 1657 aa21.4■■□□□ 1.02
CPSF4-201ENST00000292476 AKAP4Q5JQC9 854 aa21.4■■□□□ 1.02
CPSF4-201ENST00000292476 C1orf141Q5JVX7 400 aa21.39■■□□□ 1.01
CPSF4-201ENST00000292476 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.39■■□□□ 1.01
CPSF4-201ENST00000292476 TATP17735 454 aaPredicted RBP21.38■■□□□ 1.01
CPSF4-201ENST00000292476 DDRGK1Q96HY6 314 aa21.38■■□□□ 1.01
CPSF4-201ENST00000292476 UPF1Q92900 1129 aaKnown RBP eCLIP21.37■■□□□ 1.019e-7■■■■□ 23.4
CPSF4-201ENST00000292476 RGPD2P0DJD1 1756 aa21.37■■□□□ 1.01
CPSF4-201ENST00000292476 BARGINQ6ZT62 677 aa21.37■■□□□ 1.01
CPSF4-201ENST00000292476 KRT27Q7Z3Y8 459 aa21.37■■□□□ 1.01
CPSF4-201ENST00000292476 SMC4Q9NTJ3 1288 aa21.37■■□□□ 1.01
CPSF4-201ENST00000292476 EP400Q96L91 3159 aa21.36■■□□□ 1.01
CPSF4-201ENST00000292476 IPO8O15397 1037 aaKnown RBP21.36■■□□□ 1.01
CPSF4-201ENST00000292476 BRPF1P55201 1214 aaPredicted RBP21.36■■□□□ 1.01
CPSF4-201ENST00000292476 ZNF530Q6P9A1 599 aaPredicted RBP21.36■■□□□ 1.01
CPSF4-201ENST00000292476 SPG7Q9UQ90 795 aa21.36■■□□□ 1.01
CPSF4-201ENST00000292476 KIF16BQ96L93 1317 aa21.36■■□□□ 1.01
CPSF4-201ENST00000292476 TWISTNBQ3B726 338 aaPredicted RBP21.35■■□□□ 1.01
CPSF4-201ENST00000292476 THRAP3Q9Y2W1 955 aaKnown RBP21.35■■□□□ 1.01
CPSF4-201ENST00000292476 SOS1Q07889 1333 aaPredicted RBP21.34■■□□□ 1.01
CPSF4-201ENST00000292476 VAMP4O75379 141 aa21.34■■□□□ 1.01
CPSF4-201ENST00000292476 TAF7Q15545 349 aaPredicted RBP21.34■■□□□ 1.01
CPSF4-201ENST00000292476 ZKSCAN2Q63HK3 967 aa21.34■■□□□ 1.01
CPSF4-201ENST00000292476 FRAT1Q92837 279 aaPredicted RBP21.34■■□□□ 1.01
CPSF4-201ENST00000292476 TSPYL4Q9UJ04 414 aa21.34■■□□□ 1.01
CPSF4-201ENST00000292476 OVOS2A0A0G2JMS6 1433 aa21.34■■□□□ 1.01
CPSF4-201ENST00000292476 FAM161AQ3B820 660 aa21.34■■□□□ 1.01
CPSF4-201ENST00000292476 FAM182BQ5T319 152 aa21.34■■□□□ 1.01
CPSF4-201ENST00000292476 CARD10Q9BWT7 1032 aa21.34■■□□□ 1.01
CPSF4-201ENST00000292476 IL17REQ8NFR9 667 aa21.33■■□□□ 1
CPSF4-201ENST00000292476 SSH1Q8WYL5 1049 aa21.33■■□□□ 1
CPSF4-201ENST00000292476 WNK3Q9BYP7 1800 aa21.32■■□□□ 1
CPSF4-201ENST00000292476 CEMIPQ8WUJ3 1361 aa21.32■■□□□ 1
CPSF4-201ENST00000292476 LRRC37A3O60309 1634 aa21.32■■□□□ 1
CPSF4-201ENST00000292476 CHMP4AQ9BY43 222 aa21.32■■□□□ 1
CPSF4-201ENST00000292476 CLUAP1Q96AJ1 413 aa21.31■■□□□ 1
CPSF4-201ENST00000292476 PARP4Q9UKK3 1724 aaKnown RBP21.3■■□□□ 1
CPSF4-201ENST00000292476 VIRMAQ69YN4 1812 aaKnown RBP21.3■■□□□ 1
CPSF4-201ENST00000292476 TEFQ10587 303 aa21.3■■□□□ 1
CPSF4-201ENST00000292476 BCL2L13Q9BXK5 485 aa21.3■■□□□ 1
CPSF4-201ENST00000292476 HSP90AB1P08238 724 aaKnown RBP21.28■■□□□ 1
CPSF4-201ENST00000292476 NPM2Q86SE8 214 aaKnown RBP21.28■■□□□ 1
CPSF4-201ENST00000292476 C8orf58Q8NAV2 365 aa21.28■■□□□ 1
CPSF4-201ENST00000292476 ARHGAP45Q92619 1136 aa21.28■■□□□ 1
CPSF4-201ENST00000292476 FTSJ3Q8IY81 847 aaKnown RBP21.28■■□□□ 1
CPSF4-201ENST00000292476 IFNL2Q8IZJ0 200 aa21.28■■□□□ 1
CPSF4-201ENST00000292476 C8orf34Q49A92 452 aa21.27■■□□□ 1
CPSF4-201ENST00000292476 ATF7IPQ6VMQ6 1270 aa21.27■■□□□ 1
CPSF4-201ENST00000292476 TSPYL6Q8N831 410 aa21.27■■□□□ 1
CPSF4-201ENST00000292476 RNMTO43148 476 aaKnown RBP21.26■□□□□ 0.99
CPSF4-201ENST00000292476 DZIP1LQ8IYY4 767 aaKnown RBP21.26■□□□□ 0.99
CPSF4-201ENST00000292476 DISP2A7MBM2 1401 aa21.26■□□□□ 0.99
CPSF4-201ENST00000292476 ELL2O00472 640 aaPredicted RBP21.25■□□□□ 0.99
CPSF4-201ENST00000292476 DDB1Q16531 1140 aa21.25■□□□□ 0.99
CPSF4-201ENST00000292476 NOB1Q9ULX3 412 aaKnown RBP21.25■□□□□ 0.99
CPSF4-201ENST00000292476 MRPL50Q8N5N7 158 aaKnown RBP21.24■□□□□ 0.99
CPSF4-201ENST00000292476 CDCA7Q9BWT1 371 aaPredicted RBP21.24■□□□□ 0.99
CPSF4-201ENST00000292476 MEGF6O75095 1541 aa21.24■□□□□ 0.99
CPSF4-201ENST00000292476 IL2RBP14784 551 aa21.23■□□□□ 0.99
CPSF4-201ENST00000292476 MPRIPQ6WCQ1 1025 aa21.23■□□□□ 0.99
CPSF4-201ENST00000292476 CHMP4BQ9H444 224 aaKnown RBP21.23■□□□□ 0.99
CPSF4-201ENST00000292476 LGR6Q9HBX8 967 aa21.23■□□□□ 0.99
CPSF4-201ENST00000292476 PHKG2P15735 406 aa21.22■□□□□ 0.99
CPSF4-201ENST00000292476 SKAP1Q86WV1 359 aa21.22■□□□□ 0.99
CPSF4-201ENST00000292476 MIS18AQ9NYP9 233 aa21.22■□□□□ 0.99
CPSF4-201ENST00000292476 HOXB7P09629 217 aa21.21■□□□□ 0.99
CPSF4-201ENST00000292476 PANK1Q8TE04 598 aa21.21■□□□□ 0.99
CPSF4-201ENST00000292476 DCAF5Q96JK2 942 aa21.21■□□□□ 0.99
CPSF4-201ENST00000292476 API5Q9BZZ5 524 aaKnown RBP21.21■□□□□ 0.99
CPSF4-201ENST00000292476 COG6Q9Y2V7 657 aa21.21■□□□□ 0.99
CPSF4-201ENST00000292476 BTBD11A6QL63 1104 aa21.21■□□□□ 0.99
CPSF4-201ENST00000292476 TRIM27P14373 513 aa21.21■□□□□ 0.99
CPSF4-201ENST00000292476 RTL5Q5HYW3 569 aaPredicted RBP21.21■□□□□ 0.99
CPSF4-201ENST00000292476 PKD1L3Q7Z443 1732 aa21.21■□□□□ 0.99
CPSF4-201ENST00000292476 PCDH11XQ9BZA7 1347 aa21.21■□□□□ 0.99
CPSF4-201ENST00000292476 PCDH11YQ9BZA8 1340 aa21.21■□□□□ 0.99
CPSF4-201ENST00000292476 IGHDP01880 384 aa21.2■□□□□ 0.98
CPSF4-201ENST00000292476 MVPQ14764 893 aaKnown RBP21.2■□□□□ 0.98
CPSF4-201ENST00000292476 ZCRB1Q8TBF4 217 aaKnown RBP21.2■□□□□ 0.98
CPSF4-201ENST00000292476 ADAMTS7Q9UKP4 1686 aa21.2■□□□□ 0.98
CPSF4-201ENST00000292476 EXOC5O00471 708 aa21.19■□□□□ 0.98
CPSF4-201ENST00000292476 CCDC30Q5VVM6 783 aa21.19■□□□□ 0.98
CPSF4-201ENST00000292476 FAM196AQ6ZSG2 479 aa21.19■□□□□ 0.98
CPSF4-201ENST00000292476 STK31Q9BXU1 1019 aa21.19■□□□□ 0.98
CPSF4-201ENST00000292476 DDX19BQ9UMR2 479 aa21.19■□□□□ 0.98
CPSF4-201ENST00000292476 PTPRCP08575 1304 aa21.18■□□□□ 0.98
CPSF4-201ENST00000292476 TNS2Q63HR2 1409 aa21.18■□□□□ 0.98
CPSF4-201ENST00000292476 CCDC125Q86Z20 511 aa21.18■□□□□ 0.98
CPSF4-201ENST00000292476 MARCH10Q8NA82 808 aaPredicted RBP21.18■□□□□ 0.98
CPSF4-201ENST00000292476 SF3B2Q13435 895 aaKnown RBP21.17■□□□□ 0.98
CPSF4-201ENST00000292476 NBR1Q14596 966 aa21.17■□□□□ 0.98
CPSF4-201ENST00000292476 TRIM37O94972 964 aa21.16■□□□□ 0.98
CPSF4-201ENST00000292476 SLC52A2Q9HAB3 445 aa21.16■□□□□ 0.98
CPSF4-201ENST00000292476 RLBP1P12271 317 aa21.15■□□□□ 0.98
CPSF4-201ENST00000292476 RGS3P49796 1198 aa21.15■□□□□ 0.98
CPSF4-201ENST00000292476 KRT24Q2M2I5 525 aa21.15■□□□□ 0.98
CPSF4-201ENST00000292476 CYP27B1O15528 508 aa21.15■□□□□ 0.98
CPSF4-201ENST00000292476 EIF4A1P60842 406 aaKnown RBP21.15■□□□□ 0.98
CPSF4-201ENST00000292476 DEFB132Q7Z7B7 95 aa21.15■□□□□ 0.98
CPSF4-201ENST00000292476 RWDD1Q9H446 243 aaPredicted RBP21.14■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms