RNA–Protein interactions for RNA: ENST00000291458.9

CCDC58-201, Transcript of coiled-coil domain containing 58, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC58, Length 720 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58-201ENST00000291458 MPRIPQ6WCQ1 1025 aa13.28□□□□□ -0.28
CCDC58-201ENST00000291458 LRRC4BQ9NT99 713 aa13.28□□□□□ -0.28
CCDC58-201ENST00000291458 PPP1R1BQ9UD71 204 aaPredicted RBP13.28□□□□□ -0.28
CCDC58-201ENST00000291458 IGSF1Q8N6C5 1336 aa13.28□□□□□ -0.28
CCDC58-201ENST00000291458 C5P01031 1676 aa13.28□□□□□ -0.28
CCDC58-201ENST00000291458 SLC15A2Q16348 729 aa13.27□□□□□ -0.29
CCDC58-201ENST00000291458 MTHFSP49914 203 aa13.26□□□□□ -0.29
CCDC58-201ENST00000291458 PALLDQ8WX93 1383 aa13.26□□□□□ -0.29
CCDC58-201ENST00000291458 SPON1Q9HCB6 807 aa13.26□□□□□ -0.29
CCDC58-201ENST00000291458 CCNL1Q9UK58 526 aaPredicted RBP13.26□□□□□ -0.29
CCDC58-201ENST00000291458 TAF1LQ8IZX4 1826 aa13.25□□□□□ -0.29
CCDC58-201ENST00000291458 PER1O15534 1290 aaPredicted RBP13.25□□□□□ -0.29
CCDC58-201ENST00000291458 SULT6B1Q6IMI4 303 aa13.25□□□□□ -0.29
CCDC58-201ENST00000291458 ZNF530Q6P9A1 599 aaPredicted RBP13.25□□□□□ -0.29
CCDC58-201ENST00000291458 VIRMAQ69YN4 1812 aaKnown RBP13.25□□□□□ -0.29
CCDC58-201ENST00000291458 HMOX1P09601 288 aa13.24□□□□□ -0.29
CCDC58-201ENST00000291458 PHKG2P15735 406 aa13.24□□□□□ -0.29
CCDC58-201ENST00000291458 SPOCK2Q92563 424 aa13.24□□□□□ -0.29
CCDC58-201ENST00000291458 QSER1Q2KHR3 1735 aa13.24□□□□□ -0.29
CCDC58-201ENST00000291458 IFNL2Q8IZJ0 200 aa13.23□□□□□ -0.29
CCDC58-201ENST00000291458 IL13P35225 146 aa13.22□□□□□ -0.29
CCDC58-201ENST00000291458 PLEKHO1Q53GL0 409 aaPredicted RBP13.22□□□□□ -0.29
CCDC58-201ENST00000291458 SLC27A3Q5K4L6 730 aa13.22□□□□□ -0.29
CCDC58-201ENST00000291458 PIGBQ92521 554 aa13.22□□□□□ -0.29
CCDC58-201ENST00000291458 TMOD3Q9NYL9 352 aa13.22□□□□□ -0.29
CCDC58-201ENST00000291458 TFCP2L1Q9NZI6 479 aa13.22□□□□□ -0.29
CCDC58-201ENST00000291458 C4BP0C0L5 1744 aa13.22□□□□□ -0.29
CCDC58-201ENST00000291458 U2SURPO15042 1029 aaKnown RBP13.21□□□□□ -0.29
CCDC58-201ENST00000291458 COL3A1P02461 1466 aaPredicted RBP13.21□□□□□ -0.3
CCDC58-201ENST00000291458 KDM6AO15550 1401 aaPredicted RBP13.21□□□□□ -0.3
CCDC58-201ENST00000291458 SCN11AQ9UI33 1791 aa13.2□□□□□ -0.3
CCDC58-201ENST00000291458 PNPLA7Q6ZV29 1317 aa13.2□□□□□ -0.3
CCDC58-201ENST00000291458 DIAPH1O60610 1272 aaKnown RBP13.2□□□□□ -0.3
CCDC58-201ENST00000291458 C1orf141Q5JVX7 400 aa13.2□□□□□ -0.3
CCDC58-201ENST00000291458 NKX1-1Q15270 411 aaPredicted RBP13.19□□□□□ -0.3
CCDC58-201ENST00000291458 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.19□□□□□ -0.3
CCDC58-201ENST00000291458 ASAP1Q9ULH1 1129 aa13.19□□□□□ -0.3
CCDC58-201ENST00000291458 NPC1L1Q9UHC9 1359 aa13.19□□□□□ -0.3
CCDC58-201ENST00000291458 PHF14O94880 888 aa13.18□□□□□ -0.3
CCDC58-201ENST00000291458 NUBP1P53384 320 aa13.18□□□□□ -0.3
CCDC58-201ENST00000291458 MSL1Q68DK7 614 aa13.18□□□□□ -0.3
CCDC58-201ENST00000291458 SMIM5Q71RC9 77 aa13.18□□□□□ -0.3
CCDC58-201ENST00000291458 SMARCC1Q92922 1105 aaPredicted RBP13.18□□□□□ -0.3
CCDC58-201ENST00000291458 MTFR1LQ9H019 292 aa13.18□□□□□ -0.3
CCDC58-201ENST00000291458 KDRP35968 1356 aa13.18□□□□□ -0.3
CCDC58-201ENST00000291458 UBR3Q6ZT12 1888 aa13.17□□□□□ -0.3
CCDC58-201ENST00000291458 PTGER2P43116 358 aa13.17□□□□□ -0.3
CCDC58-201ENST00000291458 AMOTQ4VCS5 1084 aa13.17□□□□□ -0.3
CCDC58-201ENST00000291458 AK7Q96M32 723 aa13.17□□□□□ -0.3
CCDC58-201ENST00000291458 HSP90AB1P08238 724 aaKnown RBP13.16□□□□□ -0.3
CCDC58-201ENST00000291458 CABP4P57796 275 aa13.16□□□□□ -0.3
CCDC58-201ENST00000291458 DCAF5Q96JK2 942 aa13.16□□□□□ -0.3
CCDC58-201ENST00000291458 LOC102724428A0A0B4J2F2 783 aa13.15□□□□□ -0.3
CCDC58-201ENST00000291458 ATP6V1AP38606 617 aa13.15□□□□□ -0.3
CCDC58-201ENST00000291458 SIK1P57059 783 aa13.15□□□□□ -0.3
CCDC58-201ENST00000291458 LINC00116Q8NCU8 138 aa13.15□□□□□ -0.3
CCDC58-201ENST00000291458 CFAP53Q96M91 514 aa13.15□□□□□ -0.3
CCDC58-201ENST00000291458 ATG3Q9NT62 314 aa13.15□□□□□ -0.3
CCDC58-201ENST00000291458 PLEKHG2Q9H7P9 1386 aa13.15□□□□□ -0.3
CCDC58-201ENST00000291458 ITPK1Q13572 414 aa13.14□□□□□ -0.31
CCDC58-201ENST00000291458 COL23A1Q86Y22 540 aaPredicted RBP13.14□□□□□ -0.31
CCDC58-201ENST00000291458 FHDC1Q9C0D6 1143 aaPredicted RBP13.14□□□□□ -0.31
CCDC58-201ENST00000291458 COL5A3P25940 1745 aaPredicted RBP13.13□□□□□ -0.31
CCDC58-201ENST00000291458 SRCAPQ6ZRS2 3230 aa13.13□□□□□ -0.31
CCDC58-201ENST00000291458 C19orf67A6NJJ6 358 aa13.13□□□□□ -0.31
CCDC58-201ENST00000291458 PPP2R1AP30153 589 aa13.13□□□□□ -0.31
CCDC58-201ENST00000291458 AMIGO3Q86WK7 504 aa13.13□□□□□ -0.31
CCDC58-201ENST00000291458 TJP1Q07157 1748 aa13.13□□□□□ -0.31
CCDC58-201ENST00000291458 ERVV-2B6SEH9 535 aa13.12□□□□□ -0.31
CCDC58-201ENST00000291458 GNPATO15228 680 aa13.12□□□□□ -0.31
CCDC58-201ENST00000291458 PTCD1O75127 700 aaKnown RBP13.12□□□□□ -0.31
CCDC58-201ENST00000291458 POLD1P28340 1107 aa13.12□□□□□ -0.31
CCDC58-201ENST00000291458 MTHFSDQ2M296 383 aaKnown RBP13.12□□□□□ -0.31
CCDC58-201ENST00000291458 ARXQ96QS3 562 aa13.12□□□□□ -0.31
CCDC58-201ENST00000291458 COL24A1Q17RW2 1714 aa13.11□□□□□ -0.31
CCDC58-201ENST00000291458 HAX1O00165 279 aa13.11□□□□□ -0.31
CCDC58-201ENST00000291458 AKAP4Q5JQC9 854 aa13.11□□□□□ -0.31
CCDC58-201ENST00000291458 NFATC2IPQ8NCF5 419 aa13.11□□□□□ -0.31
CCDC58-201ENST00000291458 SGIP1Q9BQI5 828 aa13.11□□□□□ -0.31
CCDC58-201ENST00000291458 LGR6Q9HBX8 967 aa13.11□□□□□ -0.31
CCDC58-201ENST00000291458 MRC1P22897 1456 aa13.1□□□□□ -0.31
CCDC58-201ENST00000291458 U2AF1L5P0DN76 240 aaPredicted RBP13.1□□□□□ -0.31
CCDC58-201ENST00000291458 CD44P16070 742 aaKnown RBP13.1□□□□□ -0.31
CCDC58-201ENST00000291458 PRKAR2BP31323 418 aa13.1□□□□□ -0.31
CCDC58-201ENST00000291458 U2AF1Q01081 240 aaKnown RBP eCLIP13.1□□□□□ -0.31
CCDC58-201ENST00000291458 DDX10Q13206 875 aaKnown RBP13.1□□□□□ -0.31
CCDC58-201ENST00000291458 RASEFQ8IZ41 740 aa13.1□□□□□ -0.31
CCDC58-201ENST00000291458 FAM212AQ96EL1 285 aa13.1□□□□□ -0.31
CCDC58-201ENST00000291458 C4AP0C0L4 1744 aa13.1□□□□□ -0.31
CCDC58-201ENST00000291458 MAP3K5Q99683 1374 aa13.09□□□□□ -0.31
CCDC58-201ENST00000291458 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.09□□□□□ -0.31
CCDC58-201ENST00000291458 RNMTO43148 476 aaKnown RBP13.09□□□□□ -0.31
CCDC58-201ENST00000291458 SLC39A6Q13433 755 aa13.09□□□□□ -0.31
CCDC58-201ENST00000291458 PELP1Q8IZL8 1130 aaKnown RBP13.09□□□□□ -0.31
CCDC58-201ENST00000291458 SLC4A9Q96Q91 983 aa13.09□□□□□ -0.31
CCDC58-201ENST00000291458 MYH14Q7Z406 1995 aaKnown RBP13.09□□□□□ -0.31
CCDC58-201ENST00000291458 ADAMTS7Q9UKP4 1686 aa13.08□□□□□ -0.31
CCDC58-201ENST00000291458 SLC16A10Q8TF71 515 aa13.08□□□□□ -0.32
CCDC58-201ENST00000291458 SYT17Q9BSW7 474 aa13.08□□□□□ -0.32
CCDC58-201ENST00000291458 NUDCQ9Y266 331 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms