RNA–Protein interactions for RNA: ENST00000288976.3

PTPDC1-201, Transcript of protein tyrosine phosphatase domain containing 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPDC1, Length 4,398 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPDC1-201ENST00000288976 IL17REQ8NFR9 667 aa10.91□□□□□ -0.66
PTPDC1-201ENST00000288976 EXOC5O00471 708 aa10.91□□□□□ -0.66
PTPDC1-201ENST00000288976 SBF2Q86WG5 1849 aa10.9□□□□□ -0.66
PTPDC1-201ENST00000288976 RGPD3A6NKT7 1758 aaPredicted RBP10.9□□□□□ -0.66
PTPDC1-201ENST00000288976 RGPD4Q7Z3J3 1758 aa10.9□□□□□ -0.66
PTPDC1-201ENST00000288976 BRWD3Q6RI45 1802 aa10.9□□□□□ -0.66
PTPDC1-201ENST00000288976 TAF7Q15545 349 aaPredicted RBP10.9□□□□□ -0.66
PTPDC1-201ENST00000288976 CCDC9Q9Y3X0 531 aaKnown RBP10.9□□□□□ -0.66
PTPDC1-201ENST00000288976 SLC52A2Q9HAB3 445 aa10.9□□□□□ -0.67
PTPDC1-201ENST00000288976 KCPQ6ZWJ8 1503 aa10.89□□□□□ -0.67
PTPDC1-201ENST00000288976 DDB1Q16531 1140 aa10.89□□□□□ -0.67
PTPDC1-201ENST00000288976 MCM10Q7L590 875 aa10.89□□□□□ -0.67
PTPDC1-201ENST00000288976 C5P01031 1676 aa10.89□□□□□ -0.67
PTPDC1-201ENST00000288976 N4BP2Q86UW6 1770 aaPredicted RBP10.89□□□□□ -0.67
PTPDC1-201ENST00000288976 RREB1Q92766 1687 aa10.89□□□□□ -0.67
PTPDC1-201ENST00000288976 HEG1Q9ULI3 1381 aa10.89□□□□□ -0.67
PTPDC1-201ENST00000288976 CDCA7LQ96GN5 454 aa10.88□□□□□ -0.67
PTPDC1-201ENST00000288976 SPINK5Q9NQ38 1064 aaPredicted RBP10.88□□□□□ -0.67
PTPDC1-201ENST00000288976 MBIPQ9NS73 344 aa10.88□□□□□ -0.67
PTPDC1-201ENST00000288976 HOXB7P09629 217 aa10.88□□□□□ -0.67
PTPDC1-201ENST00000288976 CHMP4AQ9BY43 222 aa10.88□□□□□ -0.67
PTPDC1-201ENST00000288976 CACNA1FO60840 1977 aa10.88□□□□□ -0.67
PTPDC1-201ENST00000288976 QTRT2Q9H974 415 aaKnown RBP10.88□□□□□ -0.67
PTPDC1-201ENST00000288976 RBM6P78332 1123 aaKnown RBP10.87□□□□□ -0.67
PTPDC1-201ENST00000288976 TEFQ10587 303 aa10.87□□□□□ -0.67
PTPDC1-201ENST00000288976 LY75O60449 1722 aa10.87□□□□□ -0.67
PTPDC1-201ENST00000288976 TJP1Q07157 1748 aa10.87□□□□□ -0.67
PTPDC1-201ENST00000288976 MPRIPQ6WCQ1 1025 aa10.86□□□□□ -0.67
PTPDC1-201ENST00000288976 RNF123Q5XPI4 1314 aa10.86□□□□□ -0.67
PTPDC1-201ENST00000288976 BRPF1P55201 1214 aaPredicted RBP10.86□□□□□ -0.67
PTPDC1-201ENST00000288976 DCTN1Q14203 1278 aa10.86□□□□□ -0.67
PTPDC1-201ENST00000288976 LGR6Q9HBX8 967 aa10.86□□□□□ -0.67
PTPDC1-201ENST00000288976 FAM98CQ17RN3 349 aaKnown RBP10.86□□□□□ -0.67
PTPDC1-201ENST00000288976 ALDH1L2Q3SY69 923 aa10.86□□□□□ -0.67
PTPDC1-201ENST00000288976 USP35Q9P2H5 1018 aa10.86□□□□□ -0.67
PTPDC1-201ENST00000288976 TSPYL4Q9UJ04 414 aa10.86□□□□□ -0.67
PTPDC1-201ENST00000288976 COL5A3P25940 1745 aaPredicted RBP10.85□□□□□ -0.67
PTPDC1-201ENST00000288976 BTAF1O14981 1849 aa10.85□□□□□ -0.67
PTPDC1-201ENST00000288976 TULP1O00294 542 aaPredicted RBP10.85□□□□□ -0.67
PTPDC1-201ENST00000288976 THUMPD2Q9BTF0 503 aaKnown RBP10.85□□□□□ -0.67
PTPDC1-201ENST00000288976 RGS12O14924 1447 aa10.85□□□□□ -0.67
PTPDC1-201ENST00000288976 BTBD11A6QL63 1104 aa10.85□□□□□ -0.67
PTPDC1-201ENST00000288976 CABP4P57796 275 aa10.84□□□□□ -0.67
PTPDC1-201ENST00000288976 MARCH10Q8NA82 808 aaPredicted RBP10.84□□□□□ -0.67
PTPDC1-201ENST00000288976 RCAN3Q9UKA8 241 aa10.84□□□□□ -0.67
PTPDC1-201ENST00000288976 TNS1Q9HBL0 1735 aaKnown RBP10.83□□□□□ -0.68
PTPDC1-201ENST00000288976 DDX54Q8TDD1 881 aaKnown RBP10.83□□□□□ -0.68
PTPDC1-201ENST00000288976 TSR2Q969E8 191 aaKnown RBP10.83□□□□□ -0.68
PTPDC1-201ENST00000288976 TMOD3Q9NYL9 352 aa10.83□□□□□ -0.68
PTPDC1-201ENST00000288976 EIF4A1P60842 406 aaKnown RBP10.83□□□□□ -0.68
PTPDC1-201ENST00000288976 EXOSC9Q06265 439 aaKnown RBP10.83□□□□□ -0.68
PTPDC1-201ENST00000288976 SEPT12Q8IYM1 358 aa10.82□□□□□ -0.68
PTPDC1-201ENST00000288976 RXRBP28702 533 aa10.82□□□□□ -0.68
PTPDC1-201ENST00000288976 ZNF790Q6PG37 636 aa10.82□□□□□ -0.68
PTPDC1-201ENST00000288976 VSIG10Q8N0Z9 540 aa10.81□□□□□ -0.68
PTPDC1-201ENST00000288976 TWISTNBQ3B726 338 aaPredicted RBP10.81□□□□□ -0.68
PTPDC1-201ENST00000288976 LAS1LQ9Y4W2 734 aaKnown RBP10.81□□□□□ -0.68
PTPDC1-201ENST00000288976 RGS17Q9UGC6 210 aaPredicted RBP10.81□□□□□ -0.68
PTPDC1-201ENST00000288976 VAMP4O75379 141 aa10.81□□□□□ -0.68
PTPDC1-201ENST00000288976 NFATC2IPQ8NCF5 419 aa10.81□□□□□ -0.68
PTPDC1-201ENST00000288976 TAOK2Q9UL54 1235 aa10.81□□□□□ -0.68
PTPDC1-201ENST00000288976 PXDNLA1KZ92 1463 aa10.8□□□□□ -0.68
PTPDC1-201ENST00000288976 RARSP54136 660 aaKnown RBP10.8□□□□□ -0.68
PTPDC1-201ENST00000288976 TTC5Q8N0Z6 440 aa10.8□□□□□ -0.68
PTPDC1-201ENST00000288976 ERBB4Q15303 1308 aa10.8□□□□□ -0.68
PTPDC1-201ENST00000288976 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.8□□□□□ -0.68
PTPDC1-201ENST00000288976 FMNL2Q96PY5 1086 aa10.8□□□□□ -0.68
PTPDC1-201ENST00000288976 KIF16BQ96L93 1317 aa10.8□□□□□ -0.68
PTPDC1-201ENST00000288976 HMGB2P26583 209 aaKnown RBP10.79□□□□□ -0.68
PTPDC1-201ENST00000288976 SMARCC1Q92922 1105 aaPredicted RBP10.79□□□□□ -0.68
PTPDC1-201ENST00000288976 IBTKQ9P2D0 1353 aaPredicted RBP10.79□□□□□ -0.68
PTPDC1-201ENST00000288976 KRT27Q7Z3Y8 459 aa10.79□□□□□ -0.68
PTPDC1-201ENST00000288976 C8orf58Q8NAV2 365 aa10.79□□□□□ -0.68
PTPDC1-201ENST00000288976 TEX13AQ9BXU3 409 aaPredicted RBP10.79□□□□□ -0.68
PTPDC1-201ENST00000288976 ZNF330Q9Y3S2 320 aaPredicted RBP10.79□□□□□ -0.68
PTPDC1-201ENST00000288976 NUP188Q5SRE5 1749 aa10.79□□□□□ -0.68
PTPDC1-201ENST00000288976 FAM196AQ6ZSG2 479 aa10.79□□□□□ -0.68
PTPDC1-201ENST00000288976 PIGBQ92521 554 aa10.79□□□□□ -0.68
PTPDC1-201ENST00000288976 CCDC30Q5VVM6 783 aa10.78□□□□□ -0.68
PTPDC1-201ENST00000288976 ARHGAP45Q92619 1136 aa10.78□□□□□ -0.68
PTPDC1-201ENST00000288976 TAF1LQ8IZX4 1826 aa10.78□□□□□ -0.68
PTPDC1-201ENST00000288976 RRP1P56182 461 aaKnown RBP10.78□□□□□ -0.68
PTPDC1-201ENST00000288976 GIGYF1O75420 1035 aaPredicted RBP10.77□□□□□ -0.68
PTPDC1-201ENST00000288976 SNRPA1P09661 255 aaKnown RBP10.77□□□□□ -0.68
PTPDC1-201ENST00000288976 MS4A1P11836 297 aa10.77□□□□□ -0.68
PTPDC1-201ENST00000288976 PTPRCP08575 1304 aa10.77□□□□□ -0.69
PTPDC1-201ENST00000288976 ERICH6BQ5W0A0 696 aa10.77□□□□□ -0.69
PTPDC1-201ENST00000288976 ILDR1Q86SU0 546 aaPredicted RBP10.77□□□□□ -0.69
PTPDC1-201ENST00000288976 MRPL50Q8N5N7 158 aaKnown RBP10.77□□□□□ -0.69
PTPDC1-201ENST00000288976 BCL11BQ9C0K0 894 aaPredicted RBP10.77□□□□□ -0.69
PTPDC1-201ENST00000288976 ATG3Q9NT62 314 aa10.77□□□□□ -0.69
PTPDC1-201ENST00000288976 MIS18AQ9NYP9 233 aa10.77□□□□□ -0.69
PTPDC1-201ENST00000288976 BCORQ6W2J9 1755 aa10.76□□□□□ -0.69
PTPDC1-201ENST00000288976 TSPYL6Q8N831 410 aa10.76□□□□□ -0.69
PTPDC1-201ENST00000288976 QSER1Q2KHR3 1735 aa10.76□□□□□ -0.69
PTPDC1-201ENST00000288976 RTL5Q5HYW3 569 aaPredicted RBP10.75□□□□□ -0.69
PTPDC1-201ENST00000288976 POTEAQ6S8J7 498 aa10.75□□□□□ -0.69
PTPDC1-201ENST00000288976 ARFGEF2Q9Y6D5 1785 aa10.75□□□□□ -0.69
PTPDC1-201ENST00000288976 PALLDQ8WX93 1383 aa10.75□□□□□ -0.69
PTPDC1-201ENST00000288976 IPO8O15397 1037 aaKnown RBP10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 102.3 ms