RNA–Protein interactions for RNA: ENST00000278544.9

ACER3-201, Transcript of alkaline ceramidase 3, humanhuman

TSL 1 (best)

Gene ACER3, Length 3,500 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACER3-201ENST00000278544 ARXQ96QS3 562 aa17■□□□□ 0.31
ACER3-201ENST00000278544 AIMP1Q12904 312 aaKnown RBP17■□□□□ 0.31
ACER3-201ENST00000278544 ATF7IPQ6VMQ6 1270 aa17■□□□□ 0.31
ACER3-201ENST00000278544 MRPL50Q8N5N7 158 aaKnown RBP17■□□□□ 0.31
ACER3-201ENST00000278544 USP21Q9UK80 565 aa16.99■□□□□ 0.31
ACER3-201ENST00000278544 EXOC5O00471 708 aa16.99■□□□□ 0.31
ACER3-201ENST00000278544 PHAXQ9H814 394 aaKnown RBP16.99■□□□□ 0.31
ACER3-201ENST00000278544 MYL6BP14649 208 aa16.99■□□□□ 0.31
ACER3-201ENST00000278544 COL16A1Q07092 1604 aaPredicted RBP16.99■□□□□ 0.31
ACER3-201ENST00000278544 HTATSF1O43719 755 aaKnown RBP16.98■□□□□ 0.31
ACER3-201ENST00000278544 EIF4A1P60842 406 aaKnown RBP16.98■□□□□ 0.31
ACER3-201ENST00000278544 TTC5Q8N0Z6 440 aa16.98■□□□□ 0.31
ACER3-201ENST00000278544 ZNF496Q96IT1 587 aaPredicted RBP16.98■□□□□ 0.31
ACER3-201ENST00000278544 SLC52A2Q9HAB3 445 aa16.98■□□□□ 0.31
ACER3-201ENST00000278544 AHDC1Q5TGY3 1603 aaPredicted RBP16.98■□□□□ 0.31
ACER3-201ENST00000278544 CRYBG1Q9Y4K1 1723 aa16.98■□□□□ 0.31
ACER3-201ENST00000278544 NCBP3Q53F19 620 aaKnown RBP16.97■□□□□ 0.31
ACER3-201ENST00000278544 STK31Q9BXU1 1019 aa16.97■□□□□ 0.31
ACER3-201ENST00000278544 FKBP5Q13451 457 aaPredicted RBP16.97■□□□□ 0.31
ACER3-201ENST00000278544 JCADQ9P266 1359 aa16.97■□□□□ 0.31
ACER3-201ENST00000278544 CHPF2Q9P2E5 772 aa16.97■□□□□ 0.31
ACER3-201ENST00000278544 KDM6AO15550 1401 aaPredicted RBP16.97■□□□□ 0.31
ACER3-201ENST00000278544 DCAF5Q96JK2 942 aa16.96■□□□□ 0.31
ACER3-201ENST00000278544 DDB1Q16531 1140 aa16.96■□□□□ 0.31
ACER3-201ENST00000278544 ZNF790Q6PG37 636 aa16.96■□□□□ 0.31
ACER3-201ENST00000278544 RBM42Q9BTD8 480 aaKnown RBP16.96■□□□□ 0.31
ACER3-201ENST00000278544 PCDH11XQ9BZA7 1347 aa16.96■□□□□ 0.31
ACER3-201ENST00000278544 PCDH11YQ9BZA8 1340 aa16.96■□□□□ 0.31
ACER3-201ENST00000278544 PROSER3Q2NL68 480 aa16.96■□□□□ 0.31
ACER3-201ENST00000278544 CEMIPQ8WUJ3 1361 aa16.95■□□□□ 0.3
ACER3-201ENST00000278544 ABCA3Q99758 1704 aa16.95■□□□□ 0.3
ACER3-201ENST00000278544 KCNQ4P56696 695 aa16.94■□□□□ 0.3
ACER3-201ENST00000278544 UNC5CLQ8IV45 518 aa16.94■□□□□ 0.3
ACER3-201ENST00000278544 ASAP1Q9ULH1 1129 aa16.94■□□□□ 0.3
ACER3-201ENST00000278544 USP16Q9Y5T5 823 aa16.94■□□□□ 0.3
ACER3-201ENST00000278544 IPO8O15397 1037 aaKnown RBP16.94■□□□□ 0.3
ACER3-201ENST00000278544 PRIM1P49642 420 aaKnown RBP16.94■□□□□ 0.3
ACER3-201ENST00000278544 KIF16BQ96L93 1317 aa16.93■□□□□ 0.3
ACER3-201ENST00000278544 SPATA31A1Q5TZJ5 1347 aa16.93■□□□□ 0.3
ACER3-201ENST00000278544 ALDH1L2Q3SY69 923 aa16.92■□□□□ 0.3
ACER3-201ENST00000278544 TMOD3Q9NYL9 352 aa16.92■□□□□ 0.3
ACER3-201ENST00000278544 OVOS2A0A0G2JMS6 1433 aa16.92■□□□□ 0.3
ACER3-201ENST00000278544 AFF2P51816 1311 aa16.92■□□□□ 0.3
ACER3-201ENST00000278544 CCDC30Q5VVM6 783 aa16.92■□□□□ 0.3
ACER3-201ENST00000278544 CT47B1P0C2W7 299 aaPredicted RBP16.92■□□□□ 0.3
ACER3-201ENST00000278544 PDE3AQ14432 1141 aa16.92■□□□□ 0.3
ACER3-201ENST00000278544 PCDHB15Q9Y5E8 787 aa16.92■□□□□ 0.3
ACER3-201ENST00000278544 KCNQ2O43526 872 aa16.91■□□□□ 0.3
ACER3-201ENST00000278544 MVPQ14764 893 aaKnown RBP16.91■□□□□ 0.3
ACER3-201ENST00000278544 FAM208AQ9UK61 1670 aaKnown RBP16.91■□□□□ 0.3
ACER3-201ENST00000278544 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.91■□□□□ 0.3
ACER3-201ENST00000278544 LMO7Q8WWI1 1683 aa16.91■□□□□ 0.3
ACER3-201ENST00000278544 GIGYF1O75420 1035 aaPredicted RBP16.91■□□□□ 0.3
ACER3-201ENST00000278544 FLIIQ13045 1269 aa16.91■□□□□ 0.3
ACER3-201ENST00000278544 PTF1AQ7RTS3 328 aa16.91■□□□□ 0.3
ACER3-201ENST00000278544 LRP6O75581 1613 aa16.9■□□□□ 0.3
ACER3-201ENST00000278544 IGHDP01880 384 aa16.9■□□□□ 0.3
ACER3-201ENST00000278544 PIGBQ92521 554 aa16.9■□□□□ 0.3
ACER3-201ENST00000278544 HSP90AB1P08238 724 aaKnown RBP16.9■□□□□ 0.3
ACER3-201ENST00000278544 RGS3P49796 1198 aa16.9■□□□□ 0.3
ACER3-201ENST00000278544 MARCH10Q8NA82 808 aaPredicted RBP16.9■□□□□ 0.3
ACER3-201ENST00000278544 NCAPD2Q15021 1401 aa16.89■□□□□ 0.29
ACER3-201ENST00000278544 APBB1O00213 710 aa16.89■□□□□ 0.29
ACER3-201ENST00000278544 SPATA31A5Q5VU36 1347 aa16.89■□□□□ 0.29
ACER3-201ENST00000278544 SPATA31A7Q8IWB4 1347 aa16.89■□□□□ 0.29
ACER3-201ENST00000278544 JARID2Q92833 1246 aaPredicted RBP16.88■□□□□ 0.29
ACER3-201ENST00000278544 A1BGP04217 495 aa16.88■□□□□ 0.29
ACER3-201ENST00000278544 RTL5Q5HYW3 569 aaPredicted RBP16.87■□□□□ 0.29
ACER3-201ENST00000278544 PI4KAP2A4QPH2 592 aa16.87■□□□□ 0.29
ACER3-201ENST00000278544 PI4KAP1Q8N8J0 262 aa16.87■□□□□ 0.29
ACER3-201ENST00000278544 QTRT2Q9H974 415 aaKnown RBP16.86■□□□□ 0.29
ACER3-201ENST00000278544 FMNL2Q96PY5 1086 aa16.86■□□□□ 0.29
ACER3-201ENST00000278544 ERICH6BQ5W0A0 696 aa16.85■□□□□ 0.29
ACER3-201ENST00000278544 SMIM5Q71RC9 77 aa16.85■□□□□ 0.29
ACER3-201ENST00000278544 MEIS3Q99687 375 aa16.85■□□□□ 0.29
ACER3-201ENST00000278544 BCL9LQ86UU0 1499 aa16.85■□□□□ 0.29
ACER3-201ENST00000278544 API5Q9BZZ5 524 aaKnown RBP16.84■□□□□ 0.29
ACER3-201ENST00000278544 GOLGB1Q14789 3259 aaKnown RBP16.84■□□□□ 0.29
ACER3-201ENST00000278544 DDX19BQ9UMR2 479 aa16.84■□□□□ 0.29
ACER3-201ENST00000278544 COL14A1Q05707 1796 aaKnown RBP16.84■□□□□ 0.29
ACER3-201ENST00000278544 DNAJC10Q8IXB1 793 aa16.83■□□□□ 0.29
ACER3-201ENST00000278544 SPATA31A6Q5VVP1 1343 aa16.83■□□□□ 0.28
ACER3-201ENST00000278544 SNRPA1P09661 255 aaKnown RBP16.83■□□□□ 0.28
ACER3-201ENST00000278544 COPS6Q7L5N1 327 aa16.82■□□□□ 0.28
ACER3-201ENST00000278544 FNBP4Q8N3X1 1017 aaPredicted RBP16.82■□□□□ 0.28
ACER3-201ENST00000278544 CWF19L2Q2TBE0 894 aaKnown RBP16.82■□□□□ 0.28
ACER3-201ENST00000278544 XAGE3Q8WTP9 111 aa16.82■□□□□ 0.28
ACER3-201ENST00000278544 ATG3Q9NT62 314 aa16.82■□□□□ 0.28
ACER3-201ENST00000278544 ERVV-2B6SEH9 535 aa16.82■□□□□ 0.28
ACER3-201ENST00000278544 VPS72Q15906 364 aa16.82■□□□□ 0.28
ACER3-201ENST00000278544 GJD4Q96KN9 370 aaPredicted RBP16.81■□□□□ 0.28
ACER3-201ENST00000278544 DBF4Q9UBU7 674 aaPredicted RBP16.81■□□□□ 0.28
ACER3-201ENST00000278544 MAP3K2Q9Y2U5 619 aa16.81■□□□□ 0.28
ACER3-201ENST00000278544 SLIT2O94813 1529 aa16.81■□□□□ 0.28
ACER3-201ENST00000278544 ATP5J2-PTCD1G3V325 749 aa16.8■□□□□ 0.28
ACER3-201ENST00000278544 MS4A1P11836 297 aa16.8■□□□□ 0.28
ACER3-201ENST00000278544 ZBTB3Q9H5J0 574 aa16.8■□□□□ 0.28
ACER3-201ENST00000278544 PLCH1Q4KWH8 1693 aa16.8■□□□□ 0.28
ACER3-201ENST00000278544 RIC3Q7Z5B4 369 aa16.8■□□□□ 0.28
ACER3-201ENST00000278544 ZBTB7BO15156 539 aaPredicted RBP16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms