RNA–Protein interactions for RNA: ENST00000267199.8

VPS33A-201, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33A, Length 4,586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-201ENST00000267199 ASXL2Q76L83 1435 aa13.69□□□□□ -0.22
VPS33A-201ENST00000267199 KIF1BPQ96EK5 621 aa13.69□□□□□ -0.22
VPS33A-201ENST00000267199 PTPRCP08575 1304 aa13.69□□□□□ -0.22
VPS33A-201ENST00000267199 KDM5CP41229 1560 aa13.69□□□□□ -0.22
VPS33A-201ENST00000267199 BTBD11A6QL63 1104 aa13.69□□□□□ -0.22
VPS33A-201ENST00000267199 GTF2E1P29083 439 aaPredicted RBP13.69□□□□□ -0.22
VPS33A-201ENST00000267199 RALYLQ86SE5 291 aaKnown RBP13.69□□□□□ -0.22
VPS33A-201ENST00000267199 AEBP1Q8IUX7 1158 aa13.69□□□□□ -0.22
VPS33A-201ENST00000267199 ZKSCAN5Q9Y2L8 839 aa13.69□□□□□ -0.22
VPS33A-201ENST00000267199 A0A1W2PP64 1363 aa13.69□□□□□ -0.22
VPS33A-201ENST00000267199 MYL6BP14649 208 aa13.69□□□□□ -0.22
VPS33A-201ENST00000267199 CASTP20810 708 aaKnown RBP13.69□□□□□ -0.22
VPS33A-201ENST00000267199 ME1P48163 572 aa13.69□□□□□ -0.22
VPS33A-201ENST00000267199 PUS7Q96PZ0 661 aaKnown RBP13.69□□□□□ -0.22
VPS33A-201ENST00000267199 OFD1O75665 1012 aa13.68□□□□□ -0.22
VPS33A-201ENST00000267199 ATP2B1P20020 1258 aa13.68□□□□□ -0.22
VPS33A-201ENST00000267199 SDSP20132 328 aa13.68□□□□□ -0.22
VPS33A-201ENST00000267199 SETQ01105 290 aaPredicted RBP13.68□□□□□ -0.22
VPS33A-201ENST00000267199 TAF7Q15545 349 aaPredicted RBP13.68□□□□□ -0.22
VPS33A-201ENST00000267199 C16orf71Q8IYS4 520 aaPredicted RBP13.68□□□□□ -0.22
VPS33A-201ENST00000267199 PDRG1Q9NUG6 133 aa13.68□□□□□ -0.22
VPS33A-201ENST00000267199 MBD5Q9P267 1494 aa13.68□□□□□ -0.22
VPS33A-201ENST00000267199 BLOC1S2Q6QNY1 142 aa13.68□□□□□ -0.22
VPS33A-201ENST00000267199 ABCC10Q5T3U5 1492 aa13.68□□□□□ -0.22
VPS33A-201ENST00000267199 RAB3GAP1Q15042 981 aa13.67□□□□□ -0.22
VPS33A-201ENST00000267199 LRSAM1Q6UWE0 723 aa13.67□□□□□ -0.22
VPS33A-201ENST00000267199 STK11IPQ8N1F8 1099 aa13.67□□□□□ -0.22
VPS33A-201ENST00000267199 PCMTD1Q96MG8 357 aaPredicted RBP13.67□□□□□ -0.22
VPS33A-201ENST00000267199 ADGBQ8N7X0 1667 aa13.67□□□□□ -0.22
VPS33A-201ENST00000267199 IPO7O95373 1038 aaKnown RBP13.67□□□□□ -0.22
VPS33A-201ENST00000267199 CLSTN1O94985 981 aa13.67□□□□□ -0.22
VPS33A-201ENST00000267199 TNNT1P13805 278 aa13.67□□□□□ -0.22
VPS33A-201ENST00000267199 MCM5P33992 734 aa13.67□□□□□ -0.22
VPS33A-201ENST00000267199 AKAP17AQ02040 695 aaKnown RBP13.67□□□□□ -0.22
VPS33A-201ENST00000267199 STK38Q15208 465 aa13.67□□□□□ -0.22
VPS33A-201ENST00000267199 KRT24Q2M2I5 525 aa13.67□□□□□ -0.22
VPS33A-201ENST00000267199 DDX11Q96FC9 970 aa13.67□□□□□ -0.22
VPS33A-201ENST00000267199 TRMT1Q9NXH9 659 aaKnown RBP13.67□□□□□ -0.22
VPS33A-201ENST00000267199 ANKRD44Q8N8A2 993 aa13.66□□□□□ -0.22
VPS33A-201ENST00000267199 MAGI2Q86UL8 1455 aa13.66□□□□□ -0.22
VPS33A-201ENST00000267199 WDR7Q9Y4E6 1490 aa13.66□□□□□ -0.22
VPS33A-201ENST00000267199 ATF3P18847 181 aa13.66□□□□□ -0.22
VPS33A-201ENST00000267199 SYTL4Q96C24 671 aaPredicted RBP13.66□□□□□ -0.22
VPS33A-201ENST00000267199 ACEP12821 1306 aa13.66□□□□□ -0.22
VPS33A-201ENST00000267199 MAST1Q9Y2H9 1570 aa13.66□□□□□ -0.22
VPS33A-201ENST00000267199 PATL2C9JE40 543 aaKnown RBP13.66□□□□□ -0.22
VPS33A-201ENST00000267199 GLRX3O76003 335 aaKnown RBP13.66□□□□□ -0.22
VPS33A-201ENST00000267199 NFXL1Q6ZNB6 911 aa13.66□□□□□ -0.22
VPS33A-201ENST00000267199 NOM1Q5C9Z4 860 aaKnown RBP13.66□□□□□ -0.22
VPS33A-201ENST00000267199 GIMAP6Q6P9H5 292 aa13.66□□□□□ -0.22
VPS33A-201ENST00000267199 OLFM4Q6UX06 510 aa13.66□□□□□ -0.22
VPS33A-201ENST00000267199 CWC15Q9P013 229 aaKnown RBP13.66□□□□□ -0.22
VPS33A-201ENST00000267199 AMOTL2Q9Y2J4 779 aa13.66□□□□□ -0.22
VPS33A-201ENST00000267199 ZNF518AQ6AHZ1 1483 aa13.65□□□□□ -0.22
VPS33A-201ENST00000267199 SERPINC1P01008 464 aa13.65□□□□□ -0.22
VPS33A-201ENST00000267199 ZGPATQ8N5A5 531 aaKnown RBP13.65□□□□□ -0.22
VPS33A-201ENST00000267199 SNX21Q969T3 373 aa13.65□□□□□ -0.22
VPS33A-201ENST00000267199 NOLC1Q14978 699 aaKnown RBP eCLIP13.65□□□□□ -0.22
VPS33A-201ENST00000267199 PTPN14Q15678 1187 aa13.65□□□□□ -0.22
VPS33A-201ENST00000267199 CEP170Q5SW79 1584 aa13.65□□□□□ -0.22
VPS33A-201ENST00000267199 CCDC70Q6NSX1 233 aa13.65□□□□□ -0.22
VPS33A-201ENST00000267199 PRPF40BQ6NWY9 871 aaKnown RBP13.65□□□□□ -0.22
VPS33A-201ENST00000267199 BRPF1P55201 1214 aaPredicted RBP13.64□□□□□ -0.23
VPS33A-201ENST00000267199 TMX3Q96JJ7 454 aa13.64□□□□□ -0.23
VPS33A-201ENST00000267199 TATP17735 454 aaPredicted RBP13.64□□□□□ -0.23
VPS33A-201ENST00000267199 TRIM35Q9UPQ4 493 aa13.64□□□□□ -0.23
VPS33A-201ENST00000267199 RAB11FIP3O75154 756 aa13.64□□□□□ -0.23
VPS33A-201ENST00000267199 ANKRD1Q15327 319 aa13.64□□□□□ -0.23
VPS33A-201ENST00000267199 PROSER2Q86WR7 435 aaPredicted RBP13.64□□□□□ -0.23
VPS33A-201ENST00000267199 TFIP11Q9UBB9 837 aaKnown RBP13.64□□□□□ -0.23
VPS33A-201ENST00000267199 CFAP65Q6ZU64 1925 aaKnown RBP13.64□□□□□ -0.23
VPS33A-201ENST00000267199 ZSCAN31Q96LW9 406 aaPredicted RBP13.64□□□□□ -0.23
VPS33A-201ENST00000267199 ABCC2Q92887 1545 aa13.64□□□□□ -0.23
VPS33A-201ENST00000267199 PTPRTO14522 1441 aa13.63□□□□□ -0.23
VPS33A-201ENST00000267199 UBXN4Q92575 508 aa13.63□□□□□ -0.23
VPS33A-201ENST00000267199 CEBPAP49715 358 aaPredicted RBP13.63□□□□□ -0.23
VPS33A-201ENST00000267199 DNAAF4Q8WXU2 420 aa13.63□□□□□ -0.23
VPS33A-201ENST00000267199 HOOK1Q9UJC3 728 aaKnown RBP13.63□□□□□ -0.23
VPS33A-201ENST00000267199 TTC21BQ7Z4L5 1316 aa13.63□□□□□ -0.23
VPS33A-201ENST00000267199 SPG7Q9UQ90 795 aa13.63□□□□□ -0.23
VPS33A-201ENST00000267199 PDE1AP54750 535 aa13.63□□□□□ -0.23
VPS33A-201ENST00000267199 ZC3H6P61129 1189 aaKnown RBP13.63□□□□□ -0.23
VPS33A-201ENST00000267199 LEKR1Q6ZMV7 388 aa13.63□□□□□ -0.23
VPS33A-201ENST00000267199 ZBTB7BO15156 539 aaPredicted RBP13.62□□□□□ -0.23
VPS33A-201ENST00000267199 EIF4A2Q14240 407 aaKnown RBP13.62□□□□□ -0.23
VPS33A-201ENST00000267199 CEP57L1Q8IYX8 460 aa13.62□□□□□ -0.23
VPS33A-201ENST00000267199 ANKRD20A12PQ8NF67 263 aa13.62□□□□□ -0.23
VPS33A-201ENST00000267199 RBM33Q96EV2 1170 aaKnown RBP13.62□□□□□ -0.23
VPS33A-201ENST00000267199 RBSNQ9H1K0 784 aa13.62□□□□□ -0.23
VPS33A-201ENST00000267199 DCTPP1Q9H773 170 aa13.62□□□□□ -0.23
VPS33A-201ENST00000267199 MPRIPQ6WCQ1 1025 aa13.62□□□□□ -0.23
VPS33A-201ENST00000267199 BOLA2Q9H3K6 86 aa13.62□□□□□ -0.23
VPS33A-201ENST00000267199 CLIP2Q9UDT6 1046 aa13.62□□□□□ -0.23
VPS33A-201ENST00000267199 NCKAP5LQ9HCH0 1330 aa13.62□□□□□ -0.23
VPS33A-201ENST00000267199 POLR3GO15318 223 aaPredicted RBP13.62□□□□□ -0.23
VPS33A-201ENST00000267199 ANXA1P04083 346 aa13.62□□□□□ -0.23
VPS33A-201ENST00000267199 PPP1R42Q7Z4L9 355 aa13.62□□□□□ -0.23
VPS33A-201ENST00000267199 PRIMPOLQ96LW4 560 aa13.62□□□□□ -0.23
VPS33A-201ENST00000267199 ACBD3Q9H3P7 528 aa13.62□□□□□ -0.23
VPS33A-201ENST00000267199 ZNF396Q96N95 335 aaPredicted RBP13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms