RNA–Protein interactions for RNA: ENST00000262291.8

VMP1-201, Transcript of vacuole membrane protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VMP1, Length 2,712 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-201ENST00000262291 CCDC30Q5VVM6 783 aa17.02■□□□□ 0.32
VMP1-201ENST00000262291 BTBD11A6QL63 1104 aa17.02■□□□□ 0.31
VMP1-201ENST00000262291 AKAP4Q5JQC9 854 aa17.02■□□□□ 0.31
VMP1-201ENST00000262291 KIF1AQ12756 1690 aa17.02■□□□□ 0.31
VMP1-201ENST00000262291 LMTK3Q96Q04 1460 aa17.02■□□□□ 0.31
VMP1-201ENST00000262291 LRRC37A3O60309 1634 aa17.01■□□□□ 0.31
VMP1-201ENST00000262291 PRAMEF22A3QJZ6 481 aa17.01■□□□□ 0.31
VMP1-201ENST00000262291 RNMTO43148 476 aaKnown RBP17.01■□□□□ 0.31
VMP1-201ENST00000262291 CHMP4BQ9H444 224 aaKnown RBP17■□□□□ 0.31
VMP1-201ENST00000262291 CEMIPQ8WUJ3 1361 aa17■□□□□ 0.31
VMP1-201ENST00000262291 EIF4A1P60842 406 aaKnown RBP17■□□□□ 0.31
VMP1-201ENST00000262291 C16orf71Q8IYS4 520 aaPredicted RBP16.99■□□□□ 0.31
VMP1-201ENST00000262291 ALS2Q96Q42 1657 aa16.99■□□□□ 0.31
VMP1-201ENST00000262291 SMARCA5O60264 1052 aaPredicted RBP16.99■□□□□ 0.31
VMP1-201ENST00000262291 MFAP1P55081 439 aaKnown RBP16.99■□□□□ 0.31
VMP1-201ENST00000262291 CEP85Q6P2H3 762 aa16.98■□□□□ 0.31
VMP1-201ENST00000262291 CHPF2Q9P2E5 772 aa16.98■□□□□ 0.31
VMP1-201ENST00000262291 AMOTQ4VCS5 1084 aa16.98■□□□□ 0.31
VMP1-201ENST00000262291 RAPGEF4Q8WZA2 1011 aa16.98■□□□□ 0.31
VMP1-201ENST00000262291 STRCQ7RTU9 1775 aa16.98■□□□□ 0.31
VMP1-201ENST00000262291 SPATA31A3Q5VYP0 1347 aa16.98■□□□□ 0.31
VMP1-201ENST00000262291 SLC39A6Q13433 755 aa16.98■□□□□ 0.31
VMP1-201ENST00000262291 SLAIN2Q9P270 581 aa16.98■□□□□ 0.31
VMP1-201ENST00000262291 TNS3Q68CZ2 1445 aa16.97■□□□□ 0.31
VMP1-201ENST00000262291 GCC1Q96CN9 775 aa16.97■□□□□ 0.31
VMP1-201ENST00000262291 XIRP1Q702N8 1843 aaKnown RBP16.97■□□□□ 0.31
VMP1-201ENST00000262291 OTUD7AQ8TE49 926 aaPredicted RBP16.97■□□□□ 0.31
VMP1-201ENST00000262291 PKNOX2Q96KN3 472 aa16.97■□□□□ 0.31
VMP1-201ENST00000262291 USP35Q9P2H5 1018 aa16.97■□□□□ 0.31
VMP1-201ENST00000262291 ANKRD44Q8N8A2 993 aa16.96■□□□□ 0.31
VMP1-201ENST00000262291 DDRGK1Q96HY6 314 aa16.96■□□□□ 0.31
VMP1-201ENST00000262291 DCCP43146 1447 aa16.96■□□□□ 0.31
VMP1-201ENST00000262291 ATP10DQ9P241 1426 aa16.96■□□□□ 0.31
VMP1-201ENST00000262291 PHRF1Q9P1Y6 1649 aaKnown RBP16.96■□□□□ 0.31
VMP1-201ENST00000262291 DAXXQ9UER7 740 aaPredicted RBP16.95■□□□□ 0.3
VMP1-201ENST00000262291 VIRMAQ69YN4 1812 aaKnown RBP16.95■□□□□ 0.3
VMP1-201ENST00000262291 CCT4P50991 539 aaKnown RBP16.94■□□□□ 0.3
VMP1-201ENST00000262291 GSE1Q14687 1217 aa16.94■□□□□ 0.3
VMP1-201ENST00000262291 PROSER3Q2NL68 480 aa16.94■□□□□ 0.3
VMP1-201ENST00000262291 TATP17735 454 aaPredicted RBP16.93■□□□□ 0.3
VMP1-201ENST00000262291 DCTPP1Q9H773 170 aa16.93■□□□□ 0.3
VMP1-201ENST00000262291 FAM208AQ9UK61 1670 aaKnown RBP16.93■□□□□ 0.3
VMP1-201ENST00000262291 PRDM11Q9NQV5 511 aa16.93■□□□□ 0.3
VMP1-201ENST00000262291 MEGF6O75095 1541 aa16.93■□□□□ 0.3
VMP1-201ENST00000262291 NFATC2IPQ8NCF5 419 aa16.92■□□□□ 0.3
VMP1-201ENST00000262291 BABAM1Q9NWV8 329 aa16.92■□□□□ 0.3
VMP1-201ENST00000262291 EXOC6BQ9Y2D4 811 aa16.92■□□□□ 0.3
VMP1-201ENST00000262291 UPF2Q9HAU5 1272 aaKnown RBP16.91■□□□□ 0.3
VMP1-201ENST00000262291 LRRFIP2Q9Y608 721 aaKnown RBP16.91■□□□□ 0.3
VMP1-201ENST00000262291 NCOA3Q9Y6Q9 1424 aa16.91■□□□□ 0.3
VMP1-201ENST00000262291 LMO7Q8WWI1 1683 aa16.91■□□□□ 0.3
VMP1-201ENST00000262291 RPAP2Q8IXW5 612 aaPredicted RBP16.91■□□□□ 0.3
VMP1-201ENST00000262291 NCAPD2Q15021 1401 aa16.91■□□□□ 0.3
VMP1-201ENST00000262291 PNMA6EA0A0J9YXQ4 647 aa16.9■□□□□ 0.3
VMP1-201ENST00000262291 PI4KAP2A4QPH2 592 aa16.9■□□□□ 0.3
VMP1-201ENST00000262291 PIP4K2AP48426 406 aaPredicted RBP16.9■□□□□ 0.3
VMP1-201ENST00000262291 PI4KAP1Q8N8J0 262 aa16.9■□□□□ 0.3
VMP1-201ENST00000262291 STRN4Q9NRL3 753 aa16.9■□□□□ 0.3
VMP1-201ENST00000262291 GNAI2P04899 355 aa16.9■□□□□ 0.3
VMP1-201ENST00000262291 PHKG2P15735 406 aa16.9■□□□□ 0.3
VMP1-201ENST00000262291 AIMP1Q12904 312 aaKnown RBP16.9■□□□□ 0.3
VMP1-201ENST00000262291 TBC1D32Q96NH3 1257 aa16.9■□□□□ 0.3
VMP1-201ENST00000262291 GIGYF1O75420 1035 aaPredicted RBP16.89■□□□□ 0.29
VMP1-201ENST00000262291 PLEKHM2Q8IWE5 1019 aa16.89■□□□□ 0.29
VMP1-201ENST00000262291 CYP27B1O15528 508 aa16.89■□□□□ 0.29
VMP1-201ENST00000262291 TSHZ3Q63HK5 1081 aa16.89■□□□□ 0.29
VMP1-201ENST00000262291 TOM1L2Q6ZVM7 507 aa16.89■□□□□ 0.29
VMP1-201ENST00000262291 USP44Q9H0E7 712 aa16.89■□□□□ 0.29
VMP1-201ENST00000262291 GSPT1P15170 499 aaKnown RBP16.88■□□□□ 0.29
VMP1-201ENST00000262291 SPG7Q9UQ90 795 aa16.88■□□□□ 0.29
VMP1-201ENST00000262291 KDM6AO15550 1401 aaPredicted RBP16.88■□□□□ 0.29
VMP1-201ENST00000262291 COL18A1P39060 1754 aa16.88■□□□□ 0.29
VMP1-201ENST00000262291 SPRYD3Q8NCJ5 442 aa16.87■□□□□ 0.29
VMP1-201ENST00000262291 KDM3BQ7LBC6 1761 aa16.87■□□□□ 0.29
VMP1-201ENST00000262291 C22orf23Q9BZE7 217 aa16.87■□□□□ 0.29
VMP1-201ENST00000262291 MYL6BP14649 208 aa16.86■□□□□ 0.29
VMP1-201ENST00000262291 NBPF7P0C2Y1 421 aaPredicted RBP16.86■□□□□ 0.29
VMP1-201ENST00000262291 UBTFL1P0CB47 393 aaPredicted RBP16.86■□□□□ 0.29
VMP1-201ENST00000262291 NFKBIBQ15653 356 aa16.86■□□□□ 0.29
VMP1-201ENST00000262291 BMP2KLQ5H9B9 411 aa16.86■□□□□ 0.29
VMP1-201ENST00000262291 SLC52A2Q9HAB3 445 aa16.86■□□□□ 0.29
VMP1-201ENST00000262291 IFNL2Q8IZJ0 200 aa16.85■□□□□ 0.29
VMP1-201ENST00000262291 SRCIN1Q9C0H9 1055 aa16.85■□□□□ 0.29
VMP1-201ENST00000262291 SOS2Q07890 1332 aaPredicted RBP16.85■□□□□ 0.29
VMP1-201ENST00000262291 CAMTA1Q9Y6Y1 1673 aa16.85■□□□□ 0.29
VMP1-201ENST00000262291 GNAI3P08754 354 aa16.85■□□□□ 0.29
VMP1-201ENST00000262291 ZNF790Q6PG37 636 aa16.85■□□□□ 0.29
VMP1-201ENST00000262291 DNAAF4Q8WXU2 420 aa16.85■□□□□ 0.29
VMP1-201ENST00000262291 HMMRO75330 724 aa16.84■□□□□ 0.29
VMP1-201ENST00000262291 TBC1D9Q6ZT07 1266 aa16.84■□□□□ 0.29
VMP1-201ENST00000262291 MAP3K2Q9Y2U5 619 aa16.84■□□□□ 0.29
VMP1-201ENST00000262291 ZNF496Q96IT1 587 aaPredicted RBP16.84■□□□□ 0.29
VMP1-201ENST00000262291 DBF4Q9UBU7 674 aaPredicted RBP16.84■□□□□ 0.29
VMP1-201ENST00000262291 ADCY9O60503 1353 aa16.84■□□□□ 0.29
VMP1-201ENST00000262291 CWF19L2Q2TBE0 894 aaKnown RBP16.83■□□□□ 0.29
VMP1-201ENST00000262291 LARP1Q6PKG0 1096 aaKnown RBP16.83■□□□□ 0.29
VMP1-201ENST00000262291 DDX54Q8TDD1 881 aaKnown RBP16.83■□□□□ 0.29
VMP1-201ENST00000262291 SOS1Q07889 1333 aaPredicted RBP16.83■□□□□ 0.29
VMP1-201ENST00000262291 SLKQ9H2G2 1235 aaPredicted RBP16.83■□□□□ 0.28
VMP1-201ENST00000262291 BEND3Q5T5X7 828 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms