RNA–Protein interactions for RNA: ENST00000260054.8

CCDC90B-201, Transcript of coiled-coil domain containing 90B, humanhuman

TSL 2

Gene CCDC90B, Length 1,688 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC90B-201ENST00000260054 LAS1LQ9Y4W2 734 aaKnown RBP20.62■□□□□ 0.89
CCDC90B-201ENST00000260054 SIPA1L3O60292 1781 aaPredicted RBP20.62■□□□□ 0.89
CCDC90B-201ENST00000260054 PRIM1P49642 420 aaKnown RBP20.61■□□□□ 0.89
CCDC90B-201ENST00000260054 SLFN5Q08AF3 891 aa20.61■□□□□ 0.89
CCDC90B-201ENST00000260054 MIS18AQ9NYP9 233 aa20.61■□□□□ 0.89
CCDC90B-201ENST00000260054 EP400Q96L91 3159 aa20.61■□□□□ 0.89
CCDC90B-201ENST00000260054 CHL1O00533 1208 aa20.61■□□□□ 0.89
CCDC90B-201ENST00000260054 E9PSI1 815 aa20.6■□□□□ 0.89
CCDC90B-201ENST00000260054 GNAI1P63096 354 aa20.6■□□□□ 0.89
CCDC90B-201ENST00000260054 SYTL4Q96C24 671 aaPredicted RBP20.6■□□□□ 0.89
CCDC90B-201ENST00000260054 TMOD3Q9NYL9 352 aa20.6■□□□□ 0.89
CCDC90B-201ENST00000260054 ITGB4P16144 1822 aa20.6■□□□□ 0.89
CCDC90B-201ENST00000260054 KCNQ2O43526 872 aa20.59■□□□□ 0.89
CCDC90B-201ENST00000260054 PIGBQ92521 554 aa20.59■□□□□ 0.89
CCDC90B-201ENST00000260054 TSR2Q969E8 191 aaKnown RBP20.59■□□□□ 0.89
CCDC90B-201ENST00000260054 MBIPQ9NS73 344 aa20.59■□□□□ 0.89
CCDC90B-201ENST00000260054 KAT6BQ8WYB5 2073 aa20.59■□□□□ 0.89
CCDC90B-201ENST00000260054 BTBD11A6QL63 1104 aa20.58■□□□□ 0.89
CCDC90B-201ENST00000260054 FAM196AQ6ZSG2 479 aa20.58■□□□□ 0.89
CCDC90B-201ENST00000260054 TRMT2AQ8IZ69 625 aaKnown RBP20.58■□□□□ 0.88
CCDC90B-201ENST00000260054 FANCIQ9NVI1 1328 aa20.58■□□□□ 0.88
CCDC90B-201ENST00000260054 TSPYL4Q9UJ04 414 aa20.58■□□□□ 0.88
CCDC90B-201ENST00000260054 DUSP27Q5VZP5 1158 aa20.57■□□□□ 0.88
CCDC90B-201ENST00000260054 PTF1AQ7RTS3 328 aa20.57■□□□□ 0.88
CCDC90B-201ENST00000260054 MYH16Q9H6N6 1097 aa20.57■□□□□ 0.88
CCDC90B-201ENST00000260054 BABAM1Q9NWV8 329 aa20.57■□□□□ 0.88
CCDC90B-201ENST00000260054 KCNQ3O43525 872 aa20.56■□□□□ 0.88
CCDC90B-201ENST00000260054 SLC39A6Q13433 755 aa20.56■□□□□ 0.88
CCDC90B-201ENST00000260054 SBF2Q86WG5 1849 aa20.56■□□□□ 0.88
CCDC90B-201ENST00000260054 NHSQ6T4R5 1651 aa20.56■□□□□ 0.88
CCDC90B-201ENST00000260054 KDM3BQ7LBC6 1761 aa20.55■□□□□ 0.88
CCDC90B-201ENST00000260054 ZNF790Q6PG37 636 aa20.54■□□□□ 0.88
CCDC90B-201ENST00000260054 ATG3Q9NT62 314 aa20.53■□□□□ 0.88
CCDC90B-201ENST00000260054 ASAP1Q9ULH1 1129 aa20.53■□□□□ 0.88
CCDC90B-201ENST00000260054 PAPPAQ13219 1627 aa20.53■□□□□ 0.88
CCDC90B-201ENST00000260054 TRIM37O94972 964 aa20.51■□□□□ 0.87
CCDC90B-201ENST00000260054 EIF4A1P60842 406 aaKnown RBP20.51■□□□□ 0.87
CCDC90B-201ENST00000260054 KRT24Q2M2I5 525 aa20.51■□□□□ 0.87
CCDC90B-201ENST00000260054 BCL11BQ9C0K0 894 aaPredicted RBP20.51■□□□□ 0.87
CCDC90B-201ENST00000260054 EXOSC9Q06265 439 aaKnown RBP20.5■□□□□ 0.87
CCDC90B-201ENST00000260054 PELP1Q8IZL8 1130 aaKnown RBP20.5■□□□□ 0.87
CCDC90B-201ENST00000260054 TTC5Q8N0Z6 440 aa20.5■□□□□ 0.87
CCDC90B-201ENST00000260054 BTAF1O14981 1849 aa20.49■□□□□ 0.87
CCDC90B-201ENST00000260054 KCPQ6ZWJ8 1503 aa20.49■□□□□ 0.87
CCDC90B-201ENST00000260054 C8orf58Q8NAV2 365 aa20.48■□□□□ 0.87
CCDC90B-201ENST00000260054 ZNF496Q96IT1 587 aaPredicted RBP20.48■□□□□ 0.87
CCDC90B-201ENST00000260054 UBR2Q8IWV8 1755 aa20.48■□□□□ 0.87
CCDC90B-201ENST00000260054 TSPYL6Q8N831 410 aa20.48■□□□□ 0.87
CCDC90B-201ENST00000260054 HEG1Q9ULI3 1381 aa20.47■□□□□ 0.87
CCDC90B-201ENST00000260054 PTCD1O75127 700 aaKnown RBP20.47■□□□□ 0.87
CCDC90B-201ENST00000260054 PALLDQ8WX93 1383 aa20.46■□□□□ 0.87
CCDC90B-201ENST00000260054 ELL2O00472 640 aaPredicted RBP20.46■□□□□ 0.87
CCDC90B-201ENST00000260054 FMNL2Q96PY5 1086 aa20.45■□□□□ 0.86
CCDC90B-201ENST00000260054 SMARCC1Q92922 1105 aaPredicted RBP20.45■□□□□ 0.86
CCDC90B-201ENST00000260054 PRAMEF22A3QJZ6 481 aa20.44■□□□□ 0.86
CCDC90B-201ENST00000260054 GIGYF1O75420 1035 aaPredicted RBP20.44■□□□□ 0.86
CCDC90B-201ENST00000260054 TWISTNBQ3B726 338 aaPredicted RBP20.43■□□□□ 0.86
CCDC90B-201ENST00000260054 SLC4A9Q96Q91 983 aa20.43■□□□□ 0.86
CCDC90B-201ENST00000260054 RBM42Q9BTD8 480 aaKnown RBP20.43■□□□□ 0.86
CCDC90B-201ENST00000260054 TNS1Q9HBL0 1735 aaKnown RBP20.42■□□□□ 0.86
CCDC90B-201ENST00000260054 VAMP4O75379 141 aa20.42■□□□□ 0.86
CCDC90B-201ENST00000260054 LOC102724428A0A0B4J2F2 783 aa20.41■□□□□ 0.86
CCDC90B-201ENST00000260054 SNRPA1P09661 255 aaKnown RBP20.41■□□□□ 0.86
CCDC90B-201ENST00000260054 SIK1P57059 783 aa20.41■□□□□ 0.86
CCDC90B-201ENST00000260054 C5P01031 1676 aa20.4■□□□□ 0.86
CCDC90B-201ENST00000260054 APBA3O96018 575 aa20.39■□□□□ 0.86
CCDC90B-201ENST00000260054 HOXB7P09629 217 aa20.39■□□□□ 0.86
CCDC90B-201ENST00000260054 VSIG10Q8N0Z9 540 aa20.39■□□□□ 0.86
CCDC90B-201ENST00000260054 CT47B1P0C2W7 299 aaPredicted RBP20.38■□□□□ 0.85
CCDC90B-201ENST00000260054 USP16Q9Y5T5 823 aa20.38■□□□□ 0.85
CCDC90B-201ENST00000260054 LY75O60449 1722 aa20.38■□□□□ 0.85
CCDC90B-201ENST00000260054 SOS1Q07889 1333 aaPredicted RBP20.38■□□□□ 0.85
CCDC90B-201ENST00000260054 DNAJC10Q8IXB1 793 aa20.38■□□□□ 0.85
CCDC90B-201ENST00000260054 ATP6V1AP38606 617 aa20.37■□□□□ 0.85
CCDC90B-201ENST00000260054 KCNQ4P56696 695 aa20.37■□□□□ 0.85
CCDC90B-201ENST00000260054 TJP1Q07157 1748 aa20.37■□□□□ 0.85
CCDC90B-201ENST00000260054 EIF2S2P20042 333 aaKnown RBP20.36■□□□□ 0.85
CCDC90B-201ENST00000260054 ITPK1Q13572 414 aa20.36■□□□□ 0.85
CCDC90B-201ENST00000260054 HDGFL1Q5TGJ6 251 aa20.36■□□□□ 0.85
CCDC90B-201ENST00000260054 NECTIN2Q92692 538 aa20.36■□□□□ 0.85
CCDC90B-201ENST00000260054 PLSCR1O15162 318 aa20.35■□□□□ 0.85
CCDC90B-201ENST00000260054 ILDR2Q71H61 639 aa20.35■□□□□ 0.85
CCDC90B-201ENST00000260054 ZNF831Q5JPB2 1677 aa20.35■□□□□ 0.85
CCDC90B-201ENST00000260054 CICQ96RK0 1608 aaPredicted RBP20.35■□□□□ 0.85
CCDC90B-201ENST00000260054 TCERG1O14776 1098 aaKnown RBP20.35■□□□□ 0.85
CCDC90B-201ENST00000260054 CENPBP07199 599 aaPredicted RBP20.35■□□□□ 0.85
CCDC90B-201ENST00000260054 CCNL1Q9UK58 526 aaPredicted RBP20.35■□□□□ 0.85
CCDC90B-201ENST00000260054 LAMB4A4D0S4 1761 aa20.35■□□□□ 0.85
CCDC90B-201ENST00000260054 RARSP54136 660 aaKnown RBP20.34■□□□□ 0.85
CCDC90B-201ENST00000260054 ZNF428Q96B54 188 aa20.34■□□□□ 0.85
CCDC90B-201ENST00000260054 TEX13AQ9BXU3 409 aaPredicted RBP20.34■□□□□ 0.85
CCDC90B-201ENST00000260054 PROM2Q8N271 834 aa20.33■□□□□ 0.85
CCDC90B-201ENST00000260054 LRRC4BQ9NT99 713 aa20.33■□□□□ 0.85
CCDC90B-201ENST00000260054 RCAN3Q9UKA8 241 aa20.33■□□□□ 0.85
CCDC90B-201ENST00000260054 CYP19A1P11511 503 aaPredicted RBP20.32■□□□□ 0.84
CCDC90B-201ENST00000260054 TXNRD1Q16881 649 aa20.32■□□□□ 0.84
CCDC90B-201ENST00000260054 SSH1Q8WYL5 1049 aa20.32■□□□□ 0.84
CCDC90B-201ENST00000260054 BCL2L13Q9BXK5 485 aa20.32■□□□□ 0.84
CCDC90B-201ENST00000260054 SF3B2Q13435 895 aaKnown RBP20.32■□□□□ 0.84
CCDC90B-201ENST00000260054 CCDC30Q5VVM6 783 aa20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms