RNA–Protein interactions for RNA: ENST00000258607.9

CKAP2-201, Transcript of cytoskeleton associated protein 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CKAP2, Length 3,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP2-201ENST00000258607 CPA1P15085 419 aa11.23□□□□□ -0.61
CKAP2-201ENST00000258607 SDSP20132 328 aa11.23□□□□□ -0.61
CKAP2-201ENST00000258607 ZNF853P0CG23 659 aa11.22□□□□□ -0.61
CKAP2-201ENST00000258607 SMC5Q8IY18 1101 aa11.22□□□□□ -0.61
CKAP2-201ENST00000258607 PNPLA6Q8IY17 1366 aa11.22□□□□□ -0.61
CKAP2-201ENST00000258607 IQSEC2Q5JU85 1478 aa11.22□□□□□ -0.61
CKAP2-201ENST00000258607 FAM182BQ5T319 152 aa11.22□□□□□ -0.61
CKAP2-201ENST00000258607 SRCIN1Q9C0H9 1055 aa11.22□□□□□ -0.61
CKAP2-201ENST00000258607 SPG7Q9UQ90 795 aa11.22□□□□□ -0.61
CKAP2-201ENST00000258607 SHPRHQ149N8 1683 aa11.22□□□□□ -0.61
CKAP2-201ENST00000258607 RIMS1Q86UR5 1692 aaKnown RBP11.22□□□□□ -0.61
CKAP2-201ENST00000258607 TMEM94Q12767 1356 aa11.22□□□□□ -0.61
CKAP2-201ENST00000258607 CWC27Q6UX04 472 aaKnown RBP11.22□□□□□ -0.61
CKAP2-201ENST00000258607 SMIM5Q71RC9 77 aa11.22□□□□□ -0.61
CKAP2-201ENST00000258607 UNC5CLQ8IV45 518 aa11.22□□□□□ -0.61
CKAP2-201ENST00000258607 EDC3Q96F86 508 aaKnown RBP11.22□□□□□ -0.61
CKAP2-201ENST00000258607 USP16Q9Y5T5 823 aa11.22□□□□□ -0.61
CKAP2-201ENST00000258607 PLEKHM2Q8IWE5 1019 aa11.21□□□□□ -0.61
CKAP2-201ENST00000258607 IP6K1Q92551 441 aa11.21□□□□□ -0.61
CKAP2-201ENST00000258607 TBC1D32Q96NH3 1257 aa11.21□□□□□ -0.61
CKAP2-201ENST00000258607 MYD88Q99836 296 aa11.21□□□□□ -0.61
CKAP2-201ENST00000258607 IL16Q14005 1332 aa11.21□□□□□ -0.61
CKAP2-201ENST00000258607 KIAA1210Q9ULL0 1709 aa11.21□□□□□ -0.61
CKAP2-201ENST00000258607 HMMRO75330 724 aa11.21□□□□□ -0.62
CKAP2-201ENST00000258607 MPNDQ8N594 471 aa11.2□□□□□ -0.62
CKAP2-201ENST00000258607 KIF13AQ9H1H9 1805 aa11.2□□□□□ -0.62
CKAP2-201ENST00000258607 SBNO1A3KN83 1393 aa11.2□□□□□ -0.62
CKAP2-201ENST00000258607 HDAC1Q13547 482 aaPredicted RBP11.2□□□□□ -0.62
CKAP2-201ENST00000258607 COPS6Q7L5N1 327 aa11.2□□□□□ -0.62
CKAP2-201ENST00000258607 STK11IPQ8N1F8 1099 aa11.2□□□□□ -0.62
CKAP2-201ENST00000258607 C19orf44Q9H6X5 657 aa11.2□□□□□ -0.62
CKAP2-201ENST00000258607 COL3A1P02461 1466 aaPredicted RBP11.2□□□□□ -0.62
CKAP2-201ENST00000258607 CHGBP05060 677 aa11.2□□□□□ -0.62
CKAP2-201ENST00000258607 TATP17735 454 aaPredicted RBP11.2□□□□□ -0.62
CKAP2-201ENST00000258607 GPTP24298 496 aa11.2□□□□□ -0.62
CKAP2-201ENST00000258607 CABP4P57796 275 aa11.2□□□□□ -0.62
CKAP2-201ENST00000258607 CHMP4CQ96CF2 233 aa11.2□□□□□ -0.62
CKAP2-201ENST00000258607 ACSBG1Q96GR2 724 aa11.2□□□□□ -0.62
CKAP2-201ENST00000258607 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.2□□□□□ -0.62
CKAP2-201ENST00000258607 TTC21AQ8NDW8 1320 aa11.2□□□□□ -0.62
CKAP2-201ENST00000258607 CEP170BQ9Y4F5 1589 aaPredicted RBP11.2□□□□□ -0.62
CKAP2-201ENST00000258607 NEK4P51957 841 aa11.19□□□□□ -0.62
CKAP2-201ENST00000258607 ZNF496Q96IT1 587 aaPredicted RBP11.19□□□□□ -0.62
CKAP2-201ENST00000258607 NEUROD6Q96NK8 337 aa11.19□□□□□ -0.62
CKAP2-201ENST00000258607 UBE3BQ7Z3V4 1068 aa11.19□□□□□ -0.62
CKAP2-201ENST00000258607 DLC1Q96QB1 1528 aa11.19□□□□□ -0.62
CKAP2-201ENST00000258607 CT47B1P0C2W7 299 aaPredicted RBP11.19□□□□□ -0.62
CKAP2-201ENST00000258607 XAGE3Q8WTP9 111 aa11.19□□□□□ -0.62
CKAP2-201ENST00000258607 BOLA2Q9H3K6 86 aa11.19□□□□□ -0.62
CKAP2-201ENST00000258607 RGPD8O14715 1765 aaPredicted RBP11.19□□□□□ -0.62
CKAP2-201ENST00000258607 A1BGP04217 495 aa11.18□□□□□ -0.62
CKAP2-201ENST00000258607 LRRCC1Q9C099 1032 aa11.18□□□□□ -0.62
CKAP2-201ENST00000258607 IGSF1Q8N6C5 1336 aa11.18□□□□□ -0.62
CKAP2-201ENST00000258607 SPATA31D1Q6ZQQ2 1576 aa11.18□□□□□ -0.62
CKAP2-201ENST00000258607 PKP1Q13835 747 aa11.18□□□□□ -0.62
CKAP2-201ENST00000258607 SLFNL1Q499Z3 407 aa11.18□□□□□ -0.62
CKAP2-201ENST00000258607 DNAAF4Q8WXU2 420 aa11.18□□□□□ -0.62
CKAP2-201ENST00000258607 DNAJC2Q99543 621 aaKnown RBP11.18□□□□□ -0.62
CKAP2-201ENST00000258607 USP44Q9H0E7 712 aa11.18□□□□□ -0.62
CKAP2-201ENST00000258607 MAP3K5Q99683 1374 aa11.18□□□□□ -0.62
CKAP2-201ENST00000258607 CDC45O75419 566 aa11.17□□□□□ -0.62
CKAP2-201ENST00000258607 GCC1Q96CN9 775 aa11.17□□□□□ -0.62
CKAP2-201ENST00000258607 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.17□□□□□ -0.62
CKAP2-201ENST00000258607 HSP90AB3PQ58FF7 597 aa11.17□□□□□ -0.62
CKAP2-201ENST00000258607 CASC1Q6TDU7 716 aa11.17□□□□□ -0.62
CKAP2-201ENST00000258607 ANKRD44Q8N8A2 993 aa11.17□□□□□ -0.62
CKAP2-201ENST00000258607 KCNH5Q8NCM2 988 aa11.17□□□□□ -0.62
CKAP2-201ENST00000258607 GDPD2Q9HCC8 539 aa11.17□□□□□ -0.62
CKAP2-201ENST00000258607 RNMTO43148 476 aaKnown RBP11.17□□□□□ -0.62
CKAP2-201ENST00000258607 ZGPATQ8N5A5 531 aaKnown RBP11.17□□□□□ -0.62
CKAP2-201ENST00000258607 ABCC4O15439 1325 aa11.16□□□□□ -0.62
CKAP2-201ENST00000258607 GSE1Q14687 1217 aa11.16□□□□□ -0.62
CKAP2-201ENST00000258607 KIAA0232Q92628 1395 aa11.16□□□□□ -0.62
CKAP2-201ENST00000258607 SOS1Q07889 1333 aaPredicted RBP11.16□□□□□ -0.62
CKAP2-201ENST00000258607 EIF4A1P60842 406 aaKnown RBP11.16□□□□□ -0.62
CKAP2-201ENST00000258607 LARP1Q6PKG0 1096 aaKnown RBP11.16□□□□□ -0.62
CKAP2-201ENST00000258607 AACSQ86V21 672 aa11.16□□□□□ -0.62
CKAP2-201ENST00000258607 SSFA2P28290 1259 aa11.16□□□□□ -0.62
CKAP2-201ENST00000258607 ARHGEF25Q86VW2 580 aa11.16□□□□□ -0.62
CKAP2-201ENST00000258607 CCDC24Q8N4L8 307 aa11.16□□□□□ -0.62
CKAP2-201ENST00000258607 MX1P20591 662 aa11.15□□□□□ -0.62
CKAP2-201ENST00000258607 CCT4P50991 539 aaKnown RBP11.15□□□□□ -0.62
CKAP2-201ENST00000258607 SNRKQ9NRH2 765 aa11.15□□□□□ -0.62
CKAP2-201ENST00000258607 RTL1A6NKG5 1358 aa11.15□□□□□ -0.62
CKAP2-201ENST00000258607 IFIT2P09913 472 aaKnown RBP11.15□□□□□ -0.62
CKAP2-201ENST00000258607 PDE1AP54750 535 aa11.15□□□□□ -0.62
CKAP2-201ENST00000258607 DCTPP1Q9H773 170 aa11.15□□□□□ -0.62
CKAP2-201ENST00000258607 EP400Q96L91 3159 aa11.15□□□□□ -0.63
CKAP2-201ENST00000258607 TTC22Q5TAA0 569 aa11.14□□□□□ -0.63
CKAP2-201ENST00000258607 EIF5BO60841 1220 aaKnown RBP11.14□□□□□ -0.63
CKAP2-201ENST00000258607 GNAI3P08754 354 aa11.14□□□□□ -0.63
CKAP2-201ENST00000258607 PLCB2Q00722 1185 aa11.14□□□□□ -0.63
CKAP2-201ENST00000258607 SYNE4Q8N205 404 aa11.14□□□□□ -0.63
CKAP2-201ENST00000258607 ZNF594Q96JF6 807 aaPredicted RBP11.14□□□□□ -0.63
CKAP2-201ENST00000258607 IL25Q9H293 177 aa11.14□□□□□ -0.63
CKAP2-201ENST00000258607 CHMP4BQ9H444 224 aaKnown RBP11.14□□□□□ -0.63
CKAP2-201ENST00000258607 AATKQ6ZMQ8 1374 aa11.14□□□□□ -0.63
CKAP2-201ENST00000258607 CDK12Q9NYV4 1490 aaPredicted RBP11.14□□□□□ -0.63
CKAP2-201ENST00000258607 OVOS2A0A0J9YW53 1432 aa11.14□□□□□ -0.63
CKAP2-201ENST00000258607 OVOS2Q6IE36 1432 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 108.9 ms