RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 SCN11AQ9UI33 1791 aa30.79■■■□□ 2.52
LSM4-201ENST00000252816 LINC00116Q8NCU8 138 aa30.78■■■□□ 2.52
LSM4-201ENST00000252816 SGIP1Q9BQI5 828 aa30.78■■■□□ 2.52
LSM4-201ENST00000252816 RNMTO43148 476 aaKnown RBP30.77■■■□□ 2.52
LSM4-201ENST00000252816 C4BP0C0L5 1744 aa30.77■■■□□ 2.52
LSM4-201ENST00000252816 SLC4A9Q96Q91 983 aa30.77■■■□□ 2.52
LSM4-201ENST00000252816 U2AF1L5P0DN76 240 aaPredicted RBP30.76■■■□□ 2.51
LSM4-201ENST00000252816 HMGB2P26583 209 aaKnown RBP30.76■■■□□ 2.51
LSM4-201ENST00000252816 ATP6V1AP38606 617 aa30.76■■■□□ 2.51
LSM4-201ENST00000252816 U2AF1Q01081 240 aaKnown RBP eCLIP30.76■■■□□ 2.51
LSM4-201ENST00000252816 COL23A1Q86Y22 540 aaPredicted RBP30.76■■■□□ 2.51
LSM4-201ENST00000252816 PRKAR2BP31323 418 aa30.75■■■□□ 2.51
LSM4-201ENST00000252816 AMIGO3Q86WK7 504 aa30.75■■■□□ 2.51
LSM4-201ENST00000252816 SLC16A10Q8TF71 515 aa30.75■■■□□ 2.51
LSM4-201ENST00000252816 PHACTR3Q96KR7 559 aa30.75■■■□□ 2.51
LSM4-201ENST00000252816 SLC52A2Q9HAB3 445 aa30.74■■■□□ 2.51
LSM4-201ENST00000252816 RBM42Q9BTD8 480 aaKnown RBP30.73■■■□□ 2.51
LSM4-201ENST00000252816 ADAMTS7Q9UKP4 1686 aa30.72■■■□□ 2.51
LSM4-201ENST00000252816 MRC1P22897 1456 aa30.72■■■□□ 2.51
LSM4-201ENST00000252816 GAS2L2Q8NHY3 880 aa30.72■■■□□ 2.51
LSM4-201ENST00000252816 AK7Q96M32 723 aa30.72■■■□□ 2.51
LSM4-201ENST00000252816 SMIM5Q71RC9 77 aa30.71■■■□□ 2.51
LSM4-201ENST00000252816 MSH5O43196 834 aa30.7■■■□□ 2.51
LSM4-201ENST00000252816 RALBP1Q15311 655 aa30.7■■■□□ 2.51
LSM4-201ENST00000252816 MAP3K5Q99683 1374 aa30.69■■■□□ 2.5
LSM4-201ENST00000252816 PTCD1O75127 700 aaKnown RBP30.69■■■□□ 2.5
LSM4-201ENST00000252816 FCHSD2O94868 740 aa30.68■■■□□ 2.5
LSM4-201ENST00000252816 VIRMAQ69YN4 1812 aaKnown RBP30.68■■■□□ 2.5
LSM4-201ENST00000252816 ZNF831Q5JPB2 1677 aa30.68■■■□□ 2.5
LSM4-201ENST00000252816 GNAT3A8MTJ3 354 aa30.67■■■□□ 2.5
LSM4-201ENST00000252816 UBR3Q6ZT12 1888 aa30.67■■■□□ 2.5
LSM4-201ENST00000252816 FLAD1Q8NFF5 587 aa30.66■■■□□ 2.5
LSM4-201ENST00000252816 IL17REQ8NFR9 667 aa30.66■■■□□ 2.5
LSM4-201ENST00000252816 COL24A1Q17RW2 1714 aa30.65■■■□□ 2.5
LSM4-201ENST00000252816 PHF14O94880 888 aa30.65■■■□□ 2.5
LSM4-201ENST00000252816 ARXQ96QS3 562 aa30.65■■■□□ 2.5
LSM4-201ENST00000252816 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP30.64■■■□□ 2.5
LSM4-201ENST00000252816 GNPATO15228 680 aa30.64■■■□□ 2.5
LSM4-201ENST00000252816 SLC39A6Q13433 755 aa30.64■■■□□ 2.5
LSM4-201ENST00000252816 SSFA2P28290 1259 aa30.62■■■□□ 2.49
LSM4-201ENST00000252816 MSL1Q68DK7 614 aa30.62■■■□□ 2.49
LSM4-201ENST00000252816 FHDC1Q9C0D6 1143 aaPredicted RBP30.62■■■□□ 2.49
LSM4-201ENST00000252816 COL5A3P25940 1745 aaPredicted RBP30.61■■■□□ 2.49
LSM4-201ENST00000252816 POLD1P28340 1107 aa30.6■■■□□ 2.49
LSM4-201ENST00000252816 RC3H1Q5TC82 1133 aaKnown RBP30.6■■■□□ 2.49
LSM4-201ENST00000252816 CNTNAP4Q9C0A0 1308 aa30.59■■■□□ 2.49
LSM4-201ENST00000252816 CEMIPQ8WUJ3 1361 aa30.58■■■□□ 2.49
LSM4-201ENST00000252816 MYBBP1AQ9BQG0 1328 aaKnown RBP30.58■■■□□ 2.49
LSM4-201ENST00000252816 SYT17Q9BSW7 474 aa30.58■■■□□ 2.49
LSM4-201ENST00000252816 KCPQ6ZWJ8 1503 aa30.57■■■□□ 2.49
LSM4-201ENST00000252816 TJP1Q07157 1748 aa30.57■■■□□ 2.48
LSM4-201ENST00000252816 TEFQ10587 303 aa30.57■■■□□ 2.48
LSM4-201ENST00000252816 MYH14Q7Z406 1995 aaKnown RBP30.55■■■□□ 2.48
LSM4-201ENST00000252816 CICQ96RK0 1608 aaPredicted RBP30.55■■■□□ 2.48
LSM4-201ENST00000252816 DNAJC10Q8IXB1 793 aa30.55■■■□□ 2.48
LSM4-201ENST00000252816 PLEKHF1Q96S99 279 aa30.55■■■□□ 2.48
LSM4-201ENST00000252816 RTCBQ9Y3I0 505 aaKnown RBP30.55■■■□□ 2.48
LSM4-201ENST00000252816 CRKLP46109 303 aaKnown RBP30.54■■■□□ 2.48
LSM4-201ENST00000252816 SIPA1L3O60292 1781 aaPredicted RBP30.54■■■□□ 2.48
LSM4-201ENST00000252816 RPS6KA4O75676 772 aa30.52■■■□□ 2.48
LSM4-201ENST00000252816 MCM10Q7L590 875 aa30.52■■■□□ 2.48
LSM4-201ENST00000252816 PRKRIP1Q9H875 184 aaPredicted RBP30.52■■■□□ 2.48
LSM4-201ENST00000252816 TRAPPC3LQ5T215 181 aa30.51■■■□□ 2.47
LSM4-201ENST00000252816 UBR2Q8IWV8 1755 aa30.51■■■□□ 2.47
LSM4-201ENST00000252816 DCTN1Q14203 1278 aa30.5■■■□□ 2.47
LSM4-201ENST00000252816 INTS5Q6P9B9 1019 aaKnown RBP30.5■■■□□ 2.47
LSM4-201ENST00000252816 ADRA2BP18089 450 aa30.49■■■□□ 2.47
LSM4-201ENST00000252816 ZNF790Q6PG37 636 aa30.49■■■□□ 2.47
LSM4-201ENST00000252816 TTC5Q8N0Z6 440 aa30.49■■■□□ 2.47
LSM4-201ENST00000252816 RTF1Q92541 710 aaKnown RBP30.49■■■□□ 2.47
LSM4-201ENST00000252816 ARHGEF1Q92888 912 aaKnown RBP30.49■■■□□ 2.47
LSM4-201ENST00000252816 CYP19A1P11511 503 aaPredicted RBP30.48■■■□□ 2.47
LSM4-201ENST00000252816 VSIG10Q8N0Z9 540 aa30.48■■■□□ 2.47
LSM4-201ENST00000252816 KLHL34Q8N239 644 aa30.48■■■□□ 2.47
LSM4-201ENST00000252816 ZNF496Q96IT1 587 aaPredicted RBP30.48■■■□□ 2.47
LSM4-201ENST00000252816 HTATSF1O43719 755 aaKnown RBP30.47■■■□□ 2.47
LSM4-201ENST00000252816 NEFMP07197 916 aa30.47■■■□□ 2.47
LSM4-201ENST00000252816 KCNQ3O43525 872 aa30.46■■■□□ 2.47
LSM4-201ENST00000252816 ZNF316A6NFI3 1004 aaPredicted RBP30.45■■■□□ 2.47
LSM4-201ENST00000252816 BTBD11A6QL63 1104 aa30.45■■■□□ 2.47
LSM4-201ENST00000252816 CCDC87Q9NVE4 849 aa30.45■■■□□ 2.47
LSM4-201ENST00000252816 NFE2L2Q16236 605 aa30.44■■■□□ 2.46
LSM4-201ENST00000252816 PNNQ9H307 717 aaKnown RBP30.44■■■□□ 2.46
LSM4-201ENST00000252816 HEG1Q9ULI3 1381 aa30.42■■■□□ 2.46
LSM4-201ENST00000252816 RFC4P35249 363 aa30.42■■■□□ 2.46
LSM4-201ENST00000252816 NLGN2Q8NFZ4 835 aa30.42■■■□□ 2.46
LSM4-201ENST00000252816 MAPK8IP3Q9UPT6 1336 aa30.42■■■□□ 2.46
LSM4-201ENST00000252816 DLG5Q8TDM6 1919 aa30.41■■■□□ 2.46
LSM4-201ENST00000252816 C4AP0C0L4 1744 aa30.41■■■□□ 2.46
LSM4-201ENST00000252816 SOS1Q07889 1333 aaPredicted RBP30.41■■■□□ 2.46
LSM4-201ENST00000252816 GYS1P13807 737 aa30.4■■■□□ 2.46
LSM4-201ENST00000252816 FMNL2Q96PY5 1086 aa30.4■■■□□ 2.46
LSM4-201ENST00000252816 ZBTB1Q9Y2K1 713 aa30.4■■■□□ 2.46
LSM4-201ENST00000252816 SRP68Q9UHB9 627 aaKnown RBP30.38■■■□□ 2.45
LSM4-201ENST00000252816 DCAF8L1A6NGE4 600 aa30.37■■■□□ 2.45
LSM4-201ENST00000252816 STARD3NLO95772 234 aa30.37■■■□□ 2.45
LSM4-201ENST00000252816 MMP10P09238 476 aa30.37■■■□□ 2.45
LSM4-201ENST00000252816 NLGN1Q8N2Q7 840 aa30.37■■■□□ 2.45
LSM4-201ENST00000252816 TAF7Q15545 349 aaPredicted RBP30.36■■■□□ 2.45
LSM4-201ENST00000252816 THUMPD2Q9BTF0 503 aaKnown RBP30.36■■■□□ 2.45
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms