RNA–Protein interactions for RNA: ENST00000251775.8

SNX4-201, Transcript of sorting nexin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX4, Length 2,513 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX4-201ENST00000251775 CEP85Q6P2H3 762 aa23.27■■□□□ 1.32
SNX4-201ENST00000251775 RTL1A6NKG5 1358 aa23.27■■□□□ 1.32
SNX4-201ENST00000251775 CDC45O75419 566 aa23.27■■□□□ 1.32
SNX4-201ENST00000251775 MEIS3Q99687 375 aa23.27■■□□□ 1.32
SNX4-201ENST00000251775 GSPT1P15170 499 aaKnown RBP23.26■■□□□ 1.31
SNX4-201ENST00000251775 PDZRN4Q6ZMN7 1036 aaPredicted RBP23.26■■□□□ 1.31
SNX4-201ENST00000251775 G2E3Q7L622 706 aa23.26■■□□□ 1.31
SNX4-201ENST00000251775 RPAP2Q8IXW5 612 aaPredicted RBP23.26■■□□□ 1.31
SNX4-201ENST00000251775 C16orf71Q8IYS4 520 aaPredicted RBP23.25■■□□□ 1.31
SNX4-201ENST00000251775 HOXC9P31274 260 aa23.25■■□□□ 1.31
SNX4-201ENST00000251775 MCTP1Q6DN14 999 aa23.25■■□□□ 1.31
SNX4-201ENST00000251775 TERF1P54274 439 aa23.24■■□□□ 1.31
SNX4-201ENST00000251775 NWD1Q149M9 1564 aa23.24■■□□□ 1.31
SNX4-201ENST00000251775 CYP2E1P05181 493 aaPredicted RBP23.24■■□□□ 1.31
SNX4-201ENST00000251775 ZSCAN23Q3MJ62 389 aa23.24■■□□□ 1.31
SNX4-201ENST00000251775 LMBRD1Q9NUN5 540 aa23.24■■□□□ 1.31
SNX4-201ENST00000251775 USP54Q70EL1 1684 aa23.23■■□□□ 1.31
SNX4-201ENST00000251775 CAVIN1Q6NZI2 390 aaKnown RBP23.23■■□□□ 1.31
SNX4-201ENST00000251775 LRRC37A3O60309 1634 aa23.23■■□□□ 1.31
SNX4-201ENST00000251775 RABEP1Q15276 862 aa23.23■■□□□ 1.31
SNX4-201ENST00000251775 HS1BP3Q53T59 392 aa23.23■■□□□ 1.31
SNX4-201ENST00000251775 F6X3S4 739 aa23.22■■□□□ 1.31
SNX4-201ENST00000251775 NUCB2P80303 420 aa23.22■■□□□ 1.31
SNX4-201ENST00000251775 ABTB2Q8N961 1025 aa23.21■■□□□ 1.31
SNX4-201ENST00000251775 OTUD7AQ8TE49 926 aaPredicted RBP23.21■■□□□ 1.31
SNX4-201ENST00000251775 RBSNQ9H1K0 784 aa23.21■■□□□ 1.31
SNX4-201ENST00000251775 TTC22Q5TAA0 569 aa23.21■■□□□ 1.31
SNX4-201ENST00000251775 PDLIM2Q96JY6 352 aa23.21■■□□□ 1.31
SNX4-201ENST00000251775 HTATSF1O43719 755 aaKnown RBP23.2■■□□□ 1.3
SNX4-201ENST00000251775 NOL7Q9UMY1 257 aaKnown RBP23.2■■□□□ 1.3
SNX4-201ENST00000251775 NCLP19338 710 aaKnown RBP23.2■■□□□ 1.3
SNX4-201ENST00000251775 PKP1Q13835 747 aa23.2■■□□□ 1.3
SNX4-201ENST00000251775 SLC4A10Q6U841 1118 aa23.2■■□□□ 1.3
SNX4-201ENST00000251775 EIF2AK3Q9NZJ5 1116 aaKnown RBP23.2■■□□□ 1.3
SNX4-201ENST00000251775 GNAT3A8MTJ3 354 aa23.19■■□□□ 1.3
SNX4-201ENST00000251775 SMARCA5O60264 1052 aaPredicted RBP23.19■■□□□ 1.3
SNX4-201ENST00000251775 LTV1Q96GA3 475 aaPredicted RBP23.19■■□□□ 1.3
SNX4-201ENST00000251775 APBB1O00213 710 aa23.18■■□□□ 1.3
SNX4-201ENST00000251775 ZNF500O60304 480 aaPredicted RBP23.18■■□□□ 1.3
SNX4-201ENST00000251775 RBM10P98175 930 aaKnown RBP23.17■■□□□ 1.3
SNX4-201ENST00000251775 CHD2O14647 1828 aaKnown RBP23.17■■□□□ 1.3
SNX4-201ENST00000251775 FAM208AQ9UK61 1670 aaKnown RBP23.17■■□□□ 1.3
SNX4-201ENST00000251775 PRIM1P49642 420 aaKnown RBP23.17■■□□□ 1.3
SNX4-201ENST00000251775 IL17REQ8NFR9 667 aa23.17■■□□□ 1.3
SNX4-201ENST00000251775 R3HCC1Q9Y3T6 440 aaKnown RBP23.17■■□□□ 1.3
SNX4-201ENST00000251775 CCT4P50991 539 aaKnown RBP23.16■■□□□ 1.3
SNX4-201ENST00000251775 USP26Q9BXU7 913 aa23.16■■□□□ 1.3
SNX4-201ENST00000251775 LTN1O94822 1766 aa23.16■■□□□ 1.3
SNX4-201ENST00000251775 C14orf37Q86TY3 774 aa23.15■■□□□ 1.3
SNX4-201ENST00000251775 RBM33Q96EV2 1170 aaKnown RBP23.15■■□□□ 1.3
SNX4-201ENST00000251775 STK31Q9BXU1 1019 aa23.15■■□□□ 1.3
SNX4-201ENST00000251775 MAP3K5Q99683 1374 aa23.14■■□□□ 1.3
SNX4-201ENST00000251775 GPT2Q8TD30 523 aa23.14■■□□□ 1.3
SNX4-201ENST00000251775 PHF8Q9UPP1 1060 aa23.14■■□□□ 1.3
SNX4-201ENST00000251775 USHBP1Q8N6Y0 703 aa23.13■■□□□ 1.29
SNX4-201ENST00000251775 NECTIN2Q92692 538 aa23.13■■□□□ 1.29
SNX4-201ENST00000251775 RBM27Q9P2N5 1060 aaKnown RBP23.13■■□□□ 1.29
SNX4-201ENST00000251775 CACNA1FO60840 1977 aa23.13■■□□□ 1.29
SNX4-201ENST00000251775 SETD1BQ9UPS6 1966 aaKnown RBP23.13■■□□□ 1.29
SNX4-201ENST00000251775 XPCQ01831 940 aaPredicted RBP23.13■■□□□ 1.29
SNX4-201ENST00000251775 PRPF40AO75400 957 aaKnown RBP23.12■■□□□ 1.29
SNX4-201ENST00000251775 FLIIQ13045 1269 aa23.12■■□□□ 1.29
SNX4-201ENST00000251775 CWC22Q9HCG8 908 aaKnown RBP23.12■■□□□ 1.29
SNX4-201ENST00000251775 SDSP20132 328 aa23.12■■□□□ 1.29
SNX4-201ENST00000251775 CCDC30Q5VVM6 783 aa23.12■■□□□ 1.29
SNX4-201ENST00000251775 ZGPATQ8N5A5 531 aaKnown RBP23.12■■□□□ 1.29
SNX4-201ENST00000251775 ZDHHC9Q9Y397 364 aa23.12■■□□□ 1.29
SNX4-201ENST00000251775 HMMRO75330 724 aa23.11■■□□□ 1.29
SNX4-201ENST00000251775 ZKSCAN5Q9Y2L8 839 aa23.11■■□□□ 1.29
SNX4-201ENST00000251775 TAF7Q15545 349 aaPredicted RBP23.1■■□□□ 1.29
SNX4-201ENST00000251775 FKBP5Q13451 457 aaPredicted RBP23.1■■□□□ 1.29
SNX4-201ENST00000251775 FAM13BQ9NYF5 915 aa23.1■■□□□ 1.29
SNX4-201ENST00000251775 GNAI2P04899 355 aa23.09■■□□□ 1.29
SNX4-201ENST00000251775 ANKLE2Q86XL3 938 aa23.09■■□□□ 1.29
SNX4-201ENST00000251775 MAP7D2Q96T17 732 aa23.08■■□□□ 1.29
SNX4-201ENST00000251775 UQCRHLA0A096LP55 91 aa23.08■■□□□ 1.28
SNX4-201ENST00000251775 UQCRHP07919 91 aa23.08■■□□□ 1.28
SNX4-201ENST00000251775 TMEM63CQ9P1W3 806 aa23.08■■□□□ 1.28
SNX4-201ENST00000251775 NFAT5O94916 1531 aa23.07■■□□□ 1.28
SNX4-201ENST00000251775 TRHP20396 242 aaPredicted RBP23.07■■□□□ 1.28
SNX4-201ENST00000251775 LRSAM1Q6UWE0 723 aa23.07■■□□□ 1.28
SNX4-201ENST00000251775 IP6K1Q92551 441 aa23.07■■□□□ 1.28
SNX4-201ENST00000251775 CHAMP1Q96JM3 812 aa23.06■■□□□ 1.28
SNX4-201ENST00000251775 BABAM1Q9NWV8 329 aa23.06■■□□□ 1.28
SNX4-201ENST00000251775 N4BP2Q86UW6 1770 aaPredicted RBP23.06■■□□□ 1.28
SNX4-201ENST00000251775 ST18O60284 1047 aa23.06■■□□□ 1.28
SNX4-201ENST00000251775 EXOC6BQ9Y2D4 811 aa23.06■■□□□ 1.28
SNX4-201ENST00000251775 MCM5P33992 734 aa23.05■■□□□ 1.28
SNX4-201ENST00000251775 NSFL1CQ9UNZ2 370 aaKnown RBP23.05■■□□□ 1.28
SNX4-201ENST00000251775 SOS1Q07889 1333 aaPredicted RBP23.05■■□□□ 1.28
SNX4-201ENST00000251775 RGPD2P0DJD1 1756 aa23.05■■□□□ 1.28
SNX4-201ENST00000251775 NBPF6Q5VWK0 638 aa23.05■■□□□ 1.28
SNX4-201ENST00000251775 NBPF4Q96M43 638 aa23.05■■□□□ 1.28
SNX4-201ENST00000251775 SYCE3A1L190 88 aa23.04■■□□□ 1.28
SNX4-201ENST00000251775 PNMA6EA0A0J9YXQ4 647 aa23.04■■□□□ 1.28
SNX4-201ENST00000251775 PDE1AP54750 535 aa23.04■■□□□ 1.28
SNX4-201ENST00000251775 OSBPL3Q9H4L5 887 aa23.04■■□□□ 1.28
SNX4-201ENST00000251775 ZNF142P52746 1687 aaPredicted RBP23.03■■□□□ 1.28
SNX4-201ENST00000251775 GNAI3P08754 354 aa23.03■■□□□ 1.28
SNX4-201ENST00000251775 CSPP1Q1MSJ5 1256 aa23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms