RNA–Protein interactions for RNA: ENST00000249299.6

LSM8-201, Transcript of LSM8 homolog, U6 small nuclear RNA associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM8, Length 1,305 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM8-201ENST00000249299 DCTN1Q14203 1278 aa16.77■□□□□ 0.28
LSM8-201ENST00000249299 THUMPD2Q9BTF0 503 aaKnown RBP16.77■□□□□ 0.28
LSM8-201ENST00000249299 CCDC9Q9Y3X0 531 aaKnown RBP16.77■□□□□ 0.28
LSM8-201ENST00000249299 ATRNO75882 1429 aa16.77■□□□□ 0.28
LSM8-201ENST00000249299 TNS2Q63HR2 1409 aa16.77■□□□□ 0.28
LSM8-201ENST00000249299 ERVV-2B6SEH9 535 aa16.76■□□□□ 0.27
LSM8-201ENST00000249299 ZNF772Q68DY9 489 aaPredicted RBP16.76■□□□□ 0.27
LSM8-201ENST00000249299 GJD4Q96KN9 370 aaPredicted RBP16.76■□□□□ 0.27
LSM8-201ENST00000249299 DLG5Q8TDM6 1919 aa16.76■□□□□ 0.27
LSM8-201ENST00000249299 LRRC37A3O60309 1634 aa16.76■□□□□ 0.27
LSM8-201ENST00000249299 DDB1Q16531 1140 aa16.75■□□□□ 0.27
LSM8-201ENST00000249299 CHMP4AQ9BY43 222 aa16.75■□□□□ 0.27
LSM8-201ENST00000249299 MPRIPQ6WCQ1 1025 aa16.74■□□□□ 0.27
LSM8-201ENST00000249299 LGR6Q9HBX8 967 aa16.74■□□□□ 0.27
LSM8-201ENST00000249299 MBIPQ9NS73 344 aa16.74■□□□□ 0.27
LSM8-201ENST00000249299 RCAN3Q9UKA8 241 aa16.74■□□□□ 0.27
LSM8-201ENST00000249299 SLC52A2Q9HAB3 445 aa16.73■□□□□ 0.27
LSM8-201ENST00000249299 TSPYL4Q9UJ04 414 aa16.73■□□□□ 0.27
LSM8-201ENST00000249299 KDM6AO15550 1401 aaPredicted RBP16.73■□□□□ 0.27
LSM8-201ENST00000249299 MRC1P22897 1456 aa16.73■□□□□ 0.27
LSM8-201ENST00000249299 TSR2Q969E8 191 aaKnown RBP16.71■□□□□ 0.27
LSM8-201ENST00000249299 QTRT2Q9H974 415 aaKnown RBP16.71■□□□□ 0.27
LSM8-201ENST00000249299 LAS1LQ9Y4W2 734 aaKnown RBP16.71■□□□□ 0.27
LSM8-201ENST00000249299 RNF123Q5XPI4 1314 aa16.71■□□□□ 0.27
LSM8-201ENST00000249299 HOXB7P09629 217 aa16.7■□□□□ 0.26
LSM8-201ENST00000249299 DDX54Q8TDD1 881 aaKnown RBP16.7■□□□□ 0.26
LSM8-201ENST00000249299 BTBD11A6QL63 1104 aa16.7■□□□□ 0.26
LSM8-201ENST00000249299 EXOSC9Q06265 439 aaKnown RBP16.7■□□□□ 0.26
LSM8-201ENST00000249299 FKBP8Q14318 412 aa16.7■□□□□ 0.26
LSM8-201ENST00000249299 FAM98CQ17RN3 349 aaKnown RBP16.7■□□□□ 0.26
LSM8-201ENST00000249299 BCL9O00512 1426 aa16.69■□□□□ 0.26
LSM8-201ENST00000249299 WNK3Q9BYP7 1800 aa16.69■□□□□ 0.26
LSM8-201ENST00000249299 BRPF1P55201 1214 aaPredicted RBP16.69■□□□□ 0.26
LSM8-201ENST00000249299 CABP4P57796 275 aa16.69■□□□□ 0.26
LSM8-201ENST00000249299 ALDH1L2Q3SY69 923 aa16.69■□□□□ 0.26
LSM8-201ENST00000249299 SPDYE4A6NLX3 237 aa16.67■□□□□ 0.26
LSM8-201ENST00000249299 VAMP4O75379 141 aa16.67■□□□□ 0.26
LSM8-201ENST00000249299 RARSP54136 660 aaKnown RBP16.67■□□□□ 0.26
LSM8-201ENST00000249299 RBM6P78332 1123 aaKnown RBP16.67■□□□□ 0.26
LSM8-201ENST00000249299 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.67■□□□□ 0.26
LSM8-201ENST00000249299 NFATC2IPQ8NCF5 419 aa16.67■□□□□ 0.26
LSM8-201ENST00000249299 SCN11AQ9UI33 1791 aa16.66■□□□□ 0.26
LSM8-201ENST00000249299 SHANK3Q9BYB0 1731 aa16.66■□□□□ 0.26
LSM8-201ENST00000249299 THSD7AQ9UPZ6 1657 aa16.66■□□□□ 0.26
LSM8-201ENST00000249299 GLI3P10071 1580 aa16.66■□□□□ 0.26
LSM8-201ENST00000249299 HEG1Q9ULI3 1381 aa16.66■□□□□ 0.26
LSM8-201ENST00000249299 EIF4A1P60842 406 aaKnown RBP16.66■□□□□ 0.26
LSM8-201ENST00000249299 TWISTNBQ3B726 338 aaPredicted RBP16.66■□□□□ 0.26
LSM8-201ENST00000249299 ZNF790Q6PG37 636 aa16.66■□□□□ 0.26
LSM8-201ENST00000249299 MARCH10Q8NA82 808 aaPredicted RBP16.65■□□□□ 0.26
LSM8-201ENST00000249299 SUPT16HQ9Y5B9 1047 aaKnown RBP16.65■□□□□ 0.26
LSM8-201ENST00000249299 SPDYE2BA6NHP3 402 aa16.64■□□□□ 0.25
LSM8-201ENST00000249299 SPDYE6P0CI01 402 aa16.64■□□□□ 0.25
LSM8-201ENST00000249299 SPDYE2Q495Y8 402 aa16.64■□□□□ 0.25
LSM8-201ENST00000249299 C8orf58Q8NAV2 365 aa16.64■□□□□ 0.25
LSM8-201ENST00000249299 TMOD3Q9NYL9 352 aa16.64■□□□□ 0.25
LSM8-201ENST00000249299 MIS18AQ9NYP9 233 aa16.64■□□□□ 0.25
LSM8-201ENST00000249299 SEPT12Q8IYM1 358 aa16.63■□□□□ 0.25
LSM8-201ENST00000249299 TTC5Q8N0Z6 440 aa16.63■□□□□ 0.25
LSM8-201ENST00000249299 SIPA1L3O60292 1781 aaPredicted RBP16.62■□□□□ 0.25
LSM8-201ENST00000249299 TSPYL6Q8N831 410 aa16.62■□□□□ 0.25
LSM8-201ENST00000249299 RRP1P56182 461 aaKnown RBP16.61■□□□□ 0.25
LSM8-201ENST00000249299 ERICH6BQ5W0A0 696 aa16.61■□□□□ 0.25
LSM8-201ENST00000249299 FMNL2Q96PY5 1086 aa16.61■□□□□ 0.25
LSM8-201ENST00000249299 KIF16BQ96L93 1317 aa16.6■□□□□ 0.25
LSM8-201ENST00000249299 IPO8O15397 1037 aaKnown RBP16.6■□□□□ 0.25
LSM8-201ENST00000249299 GIGYF1O75420 1035 aaPredicted RBP16.6■□□□□ 0.25
LSM8-201ENST00000249299 NEFLP07196 543 aa16.6■□□□□ 0.25
LSM8-201ENST00000249299 MS4A1P11836 297 aa16.6■□□□□ 0.25
LSM8-201ENST00000249299 CCDC30Q5VVM6 783 aa16.6■□□□□ 0.25
LSM8-201ENST00000249299 VSIG10Q8N0Z9 540 aa16.6■□□□□ 0.25
LSM8-201ENST00000249299 ARHGAP45Q92619 1136 aa16.6■□□□□ 0.25
LSM8-201ENST00000249299 KDM3BQ7LBC6 1761 aa16.6■□□□□ 0.25
LSM8-201ENST00000249299 A0A0G2JS52 829 aa16.59■□□□□ 0.25
LSM8-201ENST00000249299 SNRPA1P09661 255 aaKnown RBP16.59■□□□□ 0.25
LSM8-201ENST00000249299 RXRBP28702 533 aa16.59■□□□□ 0.25
LSM8-201ENST00000249299 MYT1Q01538 1121 aa16.59■□□□□ 0.25
LSM8-201ENST00000249299 SSH1Q8WYL5 1049 aa16.59■□□□□ 0.25
LSM8-201ENST00000249299 PIGBQ92521 554 aa16.59■□□□□ 0.25
LSM8-201ENST00000249299 PRIM1P49642 420 aaKnown RBP16.58■□□□□ 0.24
LSM8-201ENST00000249299 PDE3AQ14432 1141 aa16.58■□□□□ 0.24
LSM8-201ENST00000249299 TEX13AQ9BXU3 409 aaPredicted RBP16.58■□□□□ 0.24
LSM8-201ENST00000249299 SMC4Q9NTJ3 1288 aa16.58■□□□□ 0.24
LSM8-201ENST00000249299 SSUH2Q9Y2M2 353 aa16.58■□□□□ 0.24
LSM8-201ENST00000249299 SMARCC1Q92922 1105 aaPredicted RBP16.57■□□□□ 0.24
LSM8-201ENST00000249299 STK31Q9BXU1 1019 aa16.57■□□□□ 0.24
LSM8-201ENST00000249299 ELL2O00472 640 aaPredicted RBP16.56■□□□□ 0.24
LSM8-201ENST00000249299 KCNQ3O43525 872 aa16.56■□□□□ 0.24
LSM8-201ENST00000249299 BCAR3O75815 825 aa16.56■□□□□ 0.24
LSM8-201ENST00000249299 MRPL50Q8N5N7 158 aaKnown RBP16.56■□□□□ 0.24
LSM8-201ENST00000249299 ZNF496Q96IT1 587 aaPredicted RBP16.56■□□□□ 0.24
LSM8-201ENST00000249299 RBM42Q9BTD8 480 aaKnown RBP16.56■□□□□ 0.24
LSM8-201ENST00000249299 ERBB4Q15303 1308 aa16.56■□□□□ 0.24
LSM8-201ENST00000249299 SLC39A6Q13433 755 aa16.55■□□□□ 0.24
LSM8-201ENST00000249299 KRT24Q2M2I5 525 aa16.55■□□□□ 0.24
LSM8-201ENST00000249299 FAM196AQ6ZSG2 479 aa16.55■□□□□ 0.24
LSM8-201ENST00000249299 KRT27Q7Z3Y8 459 aa16.55■□□□□ 0.24
LSM8-201ENST00000249299 RGS17Q9UGC6 210 aaPredicted RBP16.55■□□□□ 0.24
LSM8-201ENST00000249299 VIRMAQ69YN4 1812 aaKnown RBP16.54■□□□□ 0.24
LSM8-201ENST00000249299 TOGARAM1Q9Y4F4 1720 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms