RNA–Protein interactions for RNA: ENST00000239243.6

MSX2-201, Transcript of msh homeobox 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX2, Length 2,241 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2-201ENST00000239243 CHD1LQ86WJ1 897 aa29.2■■■□□ 2.27
MSX2-201ENST00000239243 RAPGEF4Q8WZA2 1011 aa29.2■■■□□ 2.27
MSX2-201ENST00000239243 G2E3Q7L622 706 aa29.2■■■□□ 2.26
MSX2-201ENST00000239243 FLIIQ13045 1269 aa29.19■■■□□ 2.26
MSX2-201ENST00000239243 RPAP2Q8IXW5 612 aaPredicted RBP29.19■■■□□ 2.26
MSX2-201ENST00000239243 SLAIN2Q9P270 581 aa29.19■■■□□ 2.26
MSX2-201ENST00000239243 EIF4A1P60842 406 aaKnown RBP29.18■■■□□ 2.26
MSX2-201ENST00000239243 MPRIPQ6WCQ1 1025 aa29.18■■■□□ 2.26
MSX2-201ENST00000239243 SIRT2Q8IXJ6 389 aa29.18■■■□□ 2.26
MSX2-201ENST00000239243 BTBD11A6QL63 1104 aa29.18■■■□□ 2.26
MSX2-201ENST00000239243 HDGFL1Q5TGJ6 251 aa29.18■■■□□ 2.26
MSX2-201ENST00000239243 NLRP2Q9NX02 1062 aa29.18■■■□□ 2.26
MSX2-201ENST00000239243 ADAMTS7Q9UKP4 1686 aa29.17■■■□□ 2.26
MSX2-201ENST00000239243 CABLES1Q8TDN4 633 aa29.17■■■□□ 2.26
MSX2-201ENST00000239243 SOS2Q07890 1332 aaPredicted RBP29.16■■■□□ 2.26
MSX2-201ENST00000239243 TATP17735 454 aaPredicted RBP29.16■■■□□ 2.26
MSX2-201ENST00000239243 FKBP5Q13451 457 aaPredicted RBP29.16■■■□□ 2.26
MSX2-201ENST00000239243 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP29.16■■■□□ 2.26
MSX2-201ENST00000239243 PXDNLA1KZ92 1463 aa29.15■■■□□ 2.26
MSX2-201ENST00000239243 ANKRD44Q8N8A2 993 aa29.15■■■□□ 2.26
MSX2-201ENST00000239243 ATP10DQ9P241 1426 aa29.15■■■□□ 2.26
MSX2-201ENST00000239243 CSB-PGBD3P0DP91 1061 aa29.14■■■□□ 2.26
MSX2-201ENST00000239243 SLC4A10Q6U841 1118 aa29.14■■■□□ 2.26
MSX2-201ENST00000239243 LNPKQ9C0E8 428 aa29.14■■■□□ 2.26
MSX2-201ENST00000239243 ANKRD45Q5TZF3 282 aa29.13■■■□□ 2.25
MSX2-201ENST00000239243 SPG7Q9UQ90 795 aa29.13■■■□□ 2.25
MSX2-201ENST00000239243 N4BP2Q86UW6 1770 aaPredicted RBP29.13■■■□□ 2.25
MSX2-201ENST00000239243 UPF2Q9HAU5 1272 aaKnown RBP29.12■■■□□ 2.25
MSX2-201ENST00000239243 SIPA1L3O60292 1781 aaPredicted RBP29.12■■■□□ 2.25
MSX2-201ENST00000239243 F6X3S4 739 aa29.12■■■□□ 2.25
MSX2-201ENST00000239243 MEIS3Q99687 375 aa29.12■■■□□ 2.25
MSX2-201ENST00000239243 NECTIN2Q92692 538 aa29.11■■■□□ 2.25
MSX2-201ENST00000239243 CEP85Q6P2H3 762 aa29.1■■■□□ 2.25
MSX2-201ENST00000239243 DCTPP1Q9H773 170 aa29.1■■■□□ 2.25
MSX2-201ENST00000239243 CHRNA2Q15822 529 aa29.09■■■□□ 2.25
MSX2-201ENST00000239243 HMMRO75330 724 aa29.08■■■□□ 2.25
MSX2-201ENST00000239243 MEGF6O75095 1541 aa29.07■■■□□ 2.24
MSX2-201ENST00000239243 GNAI3P08754 354 aa29.07■■■□□ 2.24
MSX2-201ENST00000239243 SCN11AQ9UI33 1791 aa29.06■■■□□ 2.24
MSX2-201ENST00000239243 EIF2S2P20042 333 aaKnown RBP29.05■■■□□ 2.24
MSX2-201ENST00000239243 GNAI2P04899 355 aa29.05■■■□□ 2.24
MSX2-201ENST00000239243 IFNL2Q8IZJ0 200 aa29.05■■■□□ 2.24
MSX2-201ENST00000239243 HEG1Q9ULI3 1381 aa29.04■■■□□ 2.24
MSX2-201ENST00000239243 PKD1L3Q7Z443 1732 aa29.04■■■□□ 2.24
MSX2-201ENST00000239243 KCNQ3O43525 872 aa29.04■■■□□ 2.24
MSX2-201ENST00000239243 SEC24BO95487 1268 aa29.04■■■□□ 2.24
MSX2-201ENST00000239243 PHKG2P15735 406 aa29.04■■■□□ 2.24
MSX2-201ENST00000239243 NHSL1Q5SYE7 1610 aa29.04■■■□□ 2.24
MSX2-201ENST00000239243 PRDM11Q9NQV5 511 aa29.04■■■□□ 2.24
MSX2-201ENST00000239243 BMP2KLQ5H9B9 411 aa29.03■■■□□ 2.24
MSX2-201ENST00000239243 CHPF2Q9P2E5 772 aa29.01■■■□□ 2.24
MSX2-201ENST00000239243 DBF4Q9UBU7 674 aaPredicted RBP29.01■■■□□ 2.24
MSX2-201ENST00000239243 DAXXQ9UER7 740 aaPredicted RBP29.01■■■□□ 2.24
MSX2-201ENST00000239243 ABCA3Q99758 1704 aa29.01■■■□□ 2.23
MSX2-201ENST00000239243 GIGYF1O75420 1035 aaPredicted RBP29.01■■■□□ 2.23
MSX2-201ENST00000239243 HSP90AB1P08238 724 aaKnown RBP29.01■■■□□ 2.23
MSX2-201ENST00000239243 KDM6AO15550 1401 aaPredicted RBP29■■■□□ 2.23
MSX2-201ENST00000239243 PHAXQ9H814 394 aaKnown RBP29■■■□□ 2.23
MSX2-201ENST00000239243 SLC52A2Q9HAB3 445 aa29■■■□□ 2.23
MSX2-201ENST00000239243 WDR17Q8IZU2 1322 aa28.99■■■□□ 2.23
MSX2-201ENST00000239243 DCAF5Q96JK2 942 aa28.98■■■□□ 2.23
MSX2-201ENST00000239243 PARP4Q9UKK3 1724 aaKnown RBP28.97■■■□□ 2.23
MSX2-201ENST00000239243 MRC1P22897 1456 aa28.97■■■□□ 2.23
MSX2-201ENST00000239243 TBC1D32Q96NH3 1257 aa28.96■■■□□ 2.23
MSX2-201ENST00000239243 SRCIN1Q9C0H9 1055 aa28.96■■■□□ 2.23
MSX2-201ENST00000239243 COL5A2P05997 1499 aaPredicted RBP28.95■■■□□ 2.22
MSX2-201ENST00000239243 ZNF790Q6PG37 636 aa28.94■■■□□ 2.22
MSX2-201ENST00000239243 DNAAF4Q8WXU2 420 aa28.94■■■□□ 2.22
MSX2-201ENST00000239243 UBTFL1P0CB47 393 aaPredicted RBP28.93■■■□□ 2.22
MSX2-201ENST00000239243 TOM1L2Q6ZVM7 507 aa28.93■■■□□ 2.22
MSX2-201ENST00000239243 CYP27B1O15528 508 aa28.92■■■□□ 2.22
MSX2-201ENST00000239243 HYPKQ9NX55 129 aa28.92■■■□□ 2.22
MSX2-201ENST00000239243 USP44Q9H0E7 712 aa28.92■■■□□ 2.22
MSX2-201ENST00000239243 ATP8B2P98198 1209 aa28.9■■■□□ 2.22
MSX2-201ENST00000239243 NFATC2IPQ8NCF5 419 aa28.9■■■□□ 2.22
MSX2-201ENST00000239243 PI4KAP2A4QPH2 592 aa28.9■■■□□ 2.22
MSX2-201ENST00000239243 PLEKHM2Q8IWE5 1019 aa28.9■■■□□ 2.22
MSX2-201ENST00000239243 PI4KAP1Q8N8J0 262 aa28.9■■■□□ 2.22
MSX2-201ENST00000239243 EIF5BO60841 1220 aaKnown RBP28.89■■■□□ 2.21
MSX2-201ENST00000239243 PCDH11XQ9BZA7 1347 aa28.88■■■□□ 2.21
MSX2-201ENST00000239243 PCDH11YQ9BZA8 1340 aa28.88■■■□□ 2.21
MSX2-201ENST00000239243 BEND3Q5T5X7 828 aa28.88■■■□□ 2.21
MSX2-201ENST00000239243 CARD10Q9BWT7 1032 aa28.88■■■□□ 2.21
MSX2-201ENST00000239243 DDX21Q9NR30 783 aaKnown RBP eCLIP28.88■■■□□ 2.21
MSX2-201ENST00000239243 LRRFIP2Q9Y608 721 aaKnown RBP28.88■■■□□ 2.21
MSX2-201ENST00000239243 MFAP1P55081 439 aaKnown RBP28.87■■■□□ 2.21
MSX2-201ENST00000239243 BECN1Q14457 450 aa28.87■■■□□ 2.21
MSX2-201ENST00000239243 TTC5Q8N0Z6 440 aa28.87■■■□□ 2.21
MSX2-201ENST00000239243 ADCY9O60503 1353 aa28.87■■■□□ 2.21
MSX2-201ENST00000239243 DDX58O95786 925 aaKnown RBP28.86■■■□□ 2.21
MSX2-201ENST00000239243 KSR2Q6VAB6 950 aa28.85■■■□□ 2.21
MSX2-201ENST00000239243 ZCRB1Q8TBF4 217 aaKnown RBP28.85■■■□□ 2.21
MSX2-201ENST00000239243 C22orf23Q9BZE7 217 aa28.85■■■□□ 2.21
MSX2-201ENST00000239243 ANXA1P04083 346 aa28.85■■■□□ 2.21
MSX2-201ENST00000239243 CABP4P57796 275 aa28.84■■■□□ 2.21
MSX2-201ENST00000239243 MYT1Q01538 1121 aa28.84■■■□□ 2.21
MSX2-201ENST00000239243 SLC39A6Q13433 755 aa28.84■■■□□ 2.21
MSX2-201ENST00000239243 ALDH1L1O75891 902 aa28.84■■■□□ 2.21
MSX2-201ENST00000239243 C5P01031 1676 aa28.83■■■□□ 2.21
MSX2-201ENST00000239243 IL2RBP14784 551 aa28.83■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms