RNA–Protein interactions for RNA: ENST00000235958.4

HMGCL-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA lyase, humanhuman

TSL 5

Gene HMGCL, Length 1,101 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCL-201ENST00000235958 ASAP1Q9ULH1 1129 aa13.3□□□□□ -0.28
HMGCL-201ENST00000235958 LAS1LQ9Y4W2 734 aaKnown RBP13.3□□□□□ -0.28
HMGCL-201ENST00000235958 BTBD11A6QL63 1104 aa13.29□□□□□ -0.28
HMGCL-201ENST00000235958 CALD1Q05682 793 aaKnown RBP13.29□□□□□ -0.28
HMGCL-201ENST00000235958 ATG3Q9NT62 314 aa13.29□□□□□ -0.28
HMGCL-201ENST00000235958 EP400Q96L91 3159 aa13.29□□□□□ -0.28
HMGCL-201ENST00000235958 CHL1O00533 1208 aa13.28□□□□□ -0.28
HMGCL-201ENST00000235958 SLC39A6Q13433 755 aa13.28□□□□□ -0.28
HMGCL-201ENST00000235958 ZNF521Q96K83 1311 aa13.28□□□□□ -0.28
HMGCL-201ENST00000235958 ADAMTS7Q9UKP4 1686 aa13.28□□□□□ -0.28
HMGCL-201ENST00000235958 KCNQ3O43525 872 aa13.27□□□□□ -0.29
HMGCL-201ENST00000235958 APBA3O96018 575 aa13.27□□□□□ -0.29
HMGCL-201ENST00000235958 ZNF853P0CG23 659 aa13.27□□□□□ -0.29
HMGCL-201ENST00000235958 CCDC125Q86Z20 511 aa13.27□□□□□ -0.29
HMGCL-201ENST00000235958 CFAP44Q96MT7 982 aa13.27□□□□□ -0.29
HMGCL-201ENST00000235958 YTHDC1Q96MU7 727 aaKnown RBP13.27□□□□□ -0.29
HMGCL-201ENST00000235958 TOGARAM1Q9Y4F4 1720 aa13.27□□□□□ -0.29
HMGCL-201ENST00000235958 GNAI1P63096 354 aa13.26□□□□□ -0.29
HMGCL-201ENST00000235958 GOLGA2Q08379 1002 aa13.26□□□□□ -0.29
HMGCL-201ENST00000235958 IL16Q14005 1332 aa13.26□□□□□ -0.29
HMGCL-201ENST00000235958 ZNF790Q6PG37 636 aa13.26□□□□□ -0.29
HMGCL-201ENST00000235958 SPINK5Q9NQ38 1064 aaPredicted RBP13.26□□□□□ -0.29
HMGCL-201ENST00000235958 BABAM1Q9NWV8 329 aa13.26□□□□□ -0.29
HMGCL-201ENST00000235958 DOT1LQ8TEK3 1739 aa13.25□□□□□ -0.29
HMGCL-201ENST00000235958 PTCD1O75127 700 aaKnown RBP13.25□□□□□ -0.29
HMGCL-201ENST00000235958 UPF1Q92900 1129 aaKnown RBP eCLIP13.25□□□□□ -0.293e-12■■■■■ 46
HMGCL-201ENST00000235958 SMARCC1Q92922 1105 aaPredicted RBP13.25□□□□□ -0.29
HMGCL-201ENST00000235958 CDCA7LQ96GN5 454 aa13.25□□□□□ -0.29
HMGCL-201ENST00000235958 IFT57Q9NWB7 429 aa13.25□□□□□ -0.29
HMGCL-201ENST00000235958 TSPYL4Q9UJ04 414 aa13.25□□□□□ -0.29
HMGCL-201ENST00000235958 PLSCR1O15162 318 aa13.24□□□□□ -0.29
HMGCL-201ENST00000235958 SF3B2Q13435 895 aaKnown RBP13.24□□□□□ -0.29
HMGCL-201ENST00000235958 MBIPQ9NS73 344 aa13.24□□□□□ -0.29
HMGCL-201ENST00000235958 SIPA1L3O60292 1781 aaPredicted RBP13.23□□□□□ -0.29
HMGCL-201ENST00000235958 SLFN5Q08AF3 891 aa13.23□□□□□ -0.29
HMGCL-201ENST00000235958 TTC5Q8N0Z6 440 aa13.23□□□□□ -0.29
HMGCL-201ENST00000235958 PROM2Q8N271 834 aa13.23□□□□□ -0.29
HMGCL-201ENST00000235958 ZNF496Q96IT1 587 aaPredicted RBP13.23□□□□□ -0.29
HMGCL-201ENST00000235958 RBM42Q9BTD8 480 aaKnown RBP13.23□□□□□ -0.29
HMGCL-201ENST00000235958 MRC1P22897 1456 aa13.23□□□□□ -0.29
HMGCL-201ENST00000235958 BTAF1O14981 1849 aa13.23□□□□□ -0.29
HMGCL-201ENST00000235958 NHSQ6T4R5 1651 aa13.22□□□□□ -0.29
HMGCL-201ENST00000235958 ZBED9Q6R2W3 1325 aa13.22□□□□□ -0.29
HMGCL-201ENST00000235958 EIF4A1P60842 406 aaKnown RBP13.22□□□□□ -0.29
HMGCL-201ENST00000235958 TRMT2AQ8IZ69 625 aaKnown RBP13.22□□□□□ -0.29
HMGCL-201ENST00000235958 TSR2Q969E8 191 aaKnown RBP13.22□□□□□ -0.29
HMGCL-201ENST00000235958 LOC102724428A0A0B4J2F2 783 aa13.21□□□□□ -0.29
HMGCL-201ENST00000235958 E9PSI1 815 aa13.21□□□□□ -0.29
HMGCL-201ENST00000235958 KCNQ4P56696 695 aa13.21□□□□□ -0.29
HMGCL-201ENST00000235958 SIK1P57059 783 aa13.21□□□□□ -0.29
HMGCL-201ENST00000235958 EN1Q05925 392 aaPredicted RBP13.21□□□□□ -0.29
HMGCL-201ENST00000235958 DEFB132Q7Z7B7 95 aa13.21□□□□□ -0.29
HMGCL-201ENST00000235958 FMNL2Q96PY5 1086 aa13.21□□□□□ -0.29
HMGCL-201ENST00000235958 SLC4A9Q96Q91 983 aa13.21□□□□□ -0.29
HMGCL-201ENST00000235958 CAMKK2Q96RR4 588 aa13.21□□□□□ -0.29
HMGCL-201ENST00000235958 MYH16Q9H6N6 1097 aa13.21□□□□□ -0.29
HMGCL-201ENST00000235958 PALLDQ8WX93 1383 aa13.2□□□□□ -0.3
HMGCL-201ENST00000235958 ATP6V1AP38606 617 aa13.2□□□□□ -0.3
HMGCL-201ENST00000235958 BAG6P46379 1132 aa13.2□□□□□ -0.3
HMGCL-201ENST00000235958 TXNRD1Q16881 649 aa13.2□□□□□ -0.3
HMGCL-201ENST00000235958 KRT24Q2M2I5 525 aa13.2□□□□□ -0.3
HMGCL-201ENST00000235958 ELL2O00472 640 aaPredicted RBP13.19□□□□□ -0.3
HMGCL-201ENST00000235958 GIGYF1O75420 1035 aaPredicted RBP13.19□□□□□ -0.3
HMGCL-201ENST00000235958 SNRPA1P09661 255 aaKnown RBP13.19□□□□□ -0.3
HMGCL-201ENST00000235958 EZH2Q15910 746 aaKnown RBP13.19□□□□□ -0.3
HMGCL-201ENST00000235958 VSIG10Q8N0Z9 540 aa13.19□□□□□ -0.3
HMGCL-201ENST00000235958 C8orf58Q8NAV2 365 aa13.19□□□□□ -0.3
HMGCL-201ENST00000235958 LRRC4BQ9NT99 713 aa13.19□□□□□ -0.3
HMGCL-201ENST00000235958 FANCIQ9NVI1 1328 aa13.18□□□□□ -0.3
HMGCL-201ENST00000235958 EXOSC9Q06265 439 aaKnown RBP13.18□□□□□ -0.3
HMGCL-201ENST00000235958 DUSP27Q5VZP5 1158 aa13.18□□□□□ -0.3
HMGCL-201ENST00000235958 CCNL1Q9UK58 526 aaPredicted RBP13.18□□□□□ -0.3
HMGCL-201ENST00000235958 USP16Q9Y5T5 823 aa13.18□□□□□ -0.3
HMGCL-201ENST00000235958 HEG1Q9ULI3 1381 aa13.18□□□□□ -0.3
HMGCL-201ENST00000235958 PRAMEF22A3QJZ6 481 aa13.17□□□□□ -0.3
HMGCL-201ENST00000235958 ITPK1Q13572 414 aa13.17□□□□□ -0.3
HMGCL-201ENST00000235958 SLC27A3Q5K4L6 730 aa13.17□□□□□ -0.3
HMGCL-201ENST00000235958 DNAJC10Q8IXB1 793 aa13.17□□□□□ -0.3
HMGCL-201ENST00000235958 TSPYL6Q8N831 410 aa13.17□□□□□ -0.3
HMGCL-201ENST00000235958 TEX13AQ9BXU3 409 aaPredicted RBP13.17□□□□□ -0.3
HMGCL-201ENST00000235958 KDM3BQ7LBC6 1761 aa13.16□□□□□ -0.3
HMGCL-201ENST00000235958 TNS1Q9HBL0 1735 aaKnown RBP13.16□□□□□ -0.3
HMGCL-201ENST00000235958 KCPQ6ZWJ8 1503 aa13.15□□□□□ -0.3
HMGCL-201ENST00000235958 STARD3NLO95772 234 aa13.15□□□□□ -0.3
HMGCL-201ENST00000235958 CYP19A1P11511 503 aaPredicted RBP13.15□□□□□ -0.3
HMGCL-201ENST00000235958 EIF2S2P20042 333 aaKnown RBP13.15□□□□□ -0.3
HMGCL-201ENST00000235958 LY75O60449 1722 aa13.14□□□□□ -0.31
HMGCL-201ENST00000235958 VAMP4O75379 141 aa13.14□□□□□ -0.31
HMGCL-201ENST00000235958 HMGB2P26583 209 aaKnown RBP13.14□□□□□ -0.31
HMGCL-201ENST00000235958 TWISTNBQ3B726 338 aaPredicted RBP13.14□□□□□ -0.31
HMGCL-201ENST00000235958 LINC00116Q8NCU8 138 aa13.14□□□□□ -0.31
HMGCL-201ENST00000235958 UBR2Q8IWV8 1755 aa13.14□□□□□ -0.31
HMGCL-201ENST00000235958 PAPPAQ13219 1627 aa13.13□□□□□ -0.31
HMGCL-201ENST00000235958 A1BGP04217 495 aa13.13□□□□□ -0.31
HMGCL-201ENST00000235958 NECTIN2Q92692 538 aa13.13□□□□□ -0.31
HMGCL-201ENST00000235958 HOXB7P09629 217 aa13.12□□□□□ -0.31
HMGCL-201ENST00000235958 CRKLP46109 303 aaKnown RBP13.12□□□□□ -0.31
HMGCL-201ENST00000235958 RC3H1Q5TC82 1133 aaKnown RBP13.12□□□□□ -0.31
HMGCL-201ENST00000235958 INTS5Q6P9B9 1019 aaKnown RBP13.12□□□□□ -0.31
HMGCL-201ENST00000235958 SOS1Q07889 1333 aaPredicted RBP13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms