RNA–Protein interactions for RNA: ENSMUST00000098548.7

Scn1b-201, Transcript of Sodium channel subunit beta-1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Scn1b, Length 1,573 nt, Biotype protein coding, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Scn1b-201ENSMUST00000098548 Trim58Q5NCC9 485 aa28.98■■■□□ 2.23
Scn1b-201ENSMUST00000098548 Rbm25B2RY56 838 aaKnown RBP28.97■■■□□ 2.23
Scn1b-201ENSMUST00000098548 GalcP54818 684 aa28.96■■■□□ 2.23
Scn1b-201ENSMUST00000098548 Usp16Q99LG0 825 aa28.96■■■□□ 2.23
Scn1b-201ENSMUST00000098548 Abca3Q8R420 1704 aa28.95■■■□□ 2.23
Scn1b-201ENSMUST00000098548 1700019A02RikA0A087WPV9 146 aa28.95■■■□□ 2.22
Scn1b-201ENSMUST00000098548 Hdac6Q9Z2V5 1149 aa28.95■■■□□ 2.22
Scn1b-201ENSMUST00000098548 Foxp4Q9DBY0 795 aaKnown RBP28.93■■■□□ 2.22
Scn1b-201ENSMUST00000098548 Gm38655A0A286YDK6 273 aa28.92■■■□□ 2.22
Scn1b-201ENSMUST00000098548 Cyp2d12Q8BVD2 504 aa28.92■■■□□ 2.22
Scn1b-201ENSMUST00000098548 Afg3l2Q8JZQ2 802 aaKnown RBP28.92■■■□□ 2.22
Scn1b-201ENSMUST00000098548 Efcab2Q9CQ46 164 aa28.92■■■□□ 2.22
Scn1b-201ENSMUST00000098548 Atg3Q9CPX6 314 aa28.92■■■□□ 2.22
Scn1b-201ENSMUST00000098548 Arhgap33Q80YF9 1305 aa28.92■■■□□ 2.22
Scn1b-201ENSMUST00000098548 CastP51125 788 aa28.91■■■□□ 2.22
Scn1b-201ENSMUST00000098548 Rps6ka4Q9Z2B9 773 aa28.91■■■□□ 2.22
Scn1b-201ENSMUST00000098548 Tnnt1O88346 262 aa28.9■■■□□ 2.22
Scn1b-201ENSMUST00000098548 AceP09470 1312 aa28.9■■■□□ 2.22
Scn1b-201ENSMUST00000098548 Trim26Q99PN3 545 aa28.9■■■□□ 2.22
Scn1b-201ENSMUST00000098548 Cap2Q9CYT6 476 aa28.9■■■□□ 2.22
Scn1b-201ENSMUST00000098548 Klc3Q91W40 508 aa28.89■■■□□ 2.22
Scn1b-201ENSMUST00000098548 Eif4a1P60843 406 aaKnown RBP28.88■■■□□ 2.21
Scn1b-201ENSMUST00000098548 Tiam2Q6ZPF3 1715 aa28.86■■■□□ 2.21
Scn1b-201ENSMUST00000098548 PigbQ9JJQ0 542 aa28.86■■■□□ 2.21
Scn1b-201ENSMUST00000098548 Adamtsl1Q8BLI0 1745 aa28.85■■■□□ 2.21
Scn1b-201ENSMUST00000098548 Polr3glQ8R0C0 218 aa28.85■■■□□ 2.21
Scn1b-201ENSMUST00000098548 Col22a1E9Q7P1 1613 aa28.85■■■□□ 2.21
Scn1b-201ENSMUST00000098548 Col1a2Q01149 1372 aa28.85■■■□□ 2.21
Scn1b-201ENSMUST00000098548 Sos2Q02384 1333 aa28.85■■■□□ 2.21
Scn1b-201ENSMUST00000098548 Apbb1Q9QXJ1 710 aa28.84■■■□□ 2.21
Scn1b-201ENSMUST00000098548 Nsd3Q6P2L6 1439 aa28.84■■■□□ 2.21
Scn1b-201ENSMUST00000098548 Dlg5E9Q9R9 1921 aa28.84■■■□□ 2.21
Scn1b-201ENSMUST00000098548 Ccdc6D3YZP9 469 aa28.84■■■□□ 2.21
Scn1b-201ENSMUST00000098548 Chpf2Q3UU43 768 aa28.84■■■□□ 2.21
Scn1b-201ENSMUST00000098548 Igsf1Q7TQA1 1317 aa28.82■■■□□ 2.2
Scn1b-201ENSMUST00000098548 Smg7Q5RJH6 1138 aaKnown RBP28.82■■■□□ 2.2
Scn1b-201ENSMUST00000098548 Dcaf5Q80T85 946 aa28.81■■■□□ 2.2
Scn1b-201ENSMUST00000098548 Kiaa0319lQ8K135 1048 aa28.8■■■□□ 2.2
Scn1b-201ENSMUST00000098548 Q3TQI7 289 aaKnown RBP28.79■■■□□ 2.2
Scn1b-201ENSMUST00000098548 Vars2Q3U2A8 1060 aa28.79■■■□□ 2.2
Scn1b-201ENSMUST00000098548 Jmjd4Q8BFT6 427 aa28.79■■■□□ 2.2
Scn1b-201ENSMUST00000098548 Msh6P54276 1358 aaKnown RBP28.79■■■□□ 2.2
Scn1b-201ENSMUST00000098548 Bcl2l13P59017 434 aa28.79■■■□□ 2.2
Scn1b-201ENSMUST00000098548 Q8BT18 775 aa28.79■■■□□ 2.2
Scn1b-201ENSMUST00000098548 Gm6268A2A3U9 297 aa28.78■■■□□ 2.2
Scn1b-201ENSMUST00000098548 Vamp4O70480 141 aa28.78■■■□□ 2.2
Scn1b-201ENSMUST00000098548 Fkbp4P30416 458 aa28.77■■■□□ 2.2
Scn1b-201ENSMUST00000098548 Kcnh8P59111 1102 aa28.77■■■□□ 2.2
Scn1b-201ENSMUST00000098548 G3bp1P97855 465 aaKnown RBP28.77■■■□□ 2.2
Scn1b-201ENSMUST00000098548 Cnnm1Q0GA42 951 aa28.77■■■□□ 2.2
Scn1b-201ENSMUST00000098548 Iqsec3Q3TES0 1195 aa28.77■■■□□ 2.2
Scn1b-201ENSMUST00000098548 Ccdc60Q8C4J0 545 aa28.77■■■□□ 2.2
Scn1b-201ENSMUST00000098548 Znf521Q6KAS7 1311 aa28.77■■■□□ 2.2
Scn1b-201ENSMUST00000098548 Snapc4Q8BP86 1333 aa28.77■■■□□ 2.2
Scn1b-201ENSMUST00000098548 Bicdl1A0JNT9 577 aa28.76■■■□□ 2.19
Scn1b-201ENSMUST00000098548 Atf5O70191 283 aa28.76■■■□□ 2.19
Scn1b-201ENSMUST00000098548 Cavin2Q63918 418 aaKnown RBP28.75■■■□□ 2.19
Scn1b-201ENSMUST00000098548 GckrQ91X44 587 aa28.75■■■□□ 2.19
Scn1b-201ENSMUST00000098548 Pdia6Q922R8 440 aaKnown RBP28.75■■■□□ 2.19
Scn1b-201ENSMUST00000098548 Supt16hQ920B9 1047 aa28.75■■■□□ 2.19
Scn1b-201ENSMUST00000098548 Chmp4bQ9D8B3 224 aaKnown RBP28.75■■■□□ 2.19
Scn1b-201ENSMUST00000098548 TefQ9JLC6 301 aa28.75■■■□□ 2.19
Scn1b-201ENSMUST00000098548 Nolc1E9Q5C9 702 aaKnown RBP28.74■■■□□ 2.19
Scn1b-201ENSMUST00000098548 Clcn1Q64347 994 aa28.74■■■□□ 2.19
Scn1b-201ENSMUST00000098548 Rangap1P46061 589 aaKnown RBP28.73■■■□□ 2.19
Scn1b-201ENSMUST00000098548 Prkab2Q6PAM0 271 aa28.73■■■□□ 2.19
Scn1b-201ENSMUST00000098548 Kdm2bQ6P1G2 1309 aa28.73■■■□□ 2.19
Scn1b-201ENSMUST00000098548 Taf7Q9R1C0 341 aa28.72■■■□□ 2.19
Scn1b-201ENSMUST00000098548 Syde2E9PUP1 1314 aa28.72■■■□□ 2.19
Scn1b-201ENSMUST00000098548 Pank1Q8K4K6 548 aa28.71■■■□□ 2.19
Scn1b-201ENSMUST00000098548 Col4a1P02463 1669 aa28.71■■■□□ 2.19
Scn1b-201ENSMUST00000098548 Nav1Q8CH77 1875 aa28.71■■■□□ 2.19
Scn1b-201ENSMUST00000098548 Pim2Q62070 370 aa28.7■■■□□ 2.18
Scn1b-201ENSMUST00000098548 Kndc1Q0KK55 1742 aa28.68■■■□□ 2.18
Scn1b-201ENSMUST00000098548 Ankrd13dQ6PD24 605 aa28.68■■■□□ 2.18
Scn1b-201ENSMUST00000098548 Flad1Q8R123 492 aa28.68■■■□□ 2.18
Scn1b-201ENSMUST00000098548 KarsQ99MN1 595 aaKnown RBP28.68■■■□□ 2.18
Scn1b-201ENSMUST00000098548 Adcy9P51830 1353 aa28.67■■■□□ 2.18
Scn1b-201ENSMUST00000098548 Miga2Q8BK03 593 aa28.67■■■□□ 2.18
Scn1b-201ENSMUST00000098548 Aplp1Q03157 653 aa28.66■■■□□ 2.18
Scn1b-201ENSMUST00000098548 Slc39a6Q8C145 765 aa28.65■■■□□ 2.18
Scn1b-201ENSMUST00000098548 Tmem119Q8R138 280 aa28.65■■■□□ 2.18
Scn1b-201ENSMUST00000098548 SympkQ80X82 1284 aa28.64■■■□□ 2.18
Scn1b-201ENSMUST00000098548 Plekhm2Q80TQ5 1018 aa28.63■■■□□ 2.17
Scn1b-201ENSMUST00000098548 Nectin2P32507 530 aa28.62■■■□□ 2.17
Scn1b-201ENSMUST00000098548 Chl1P70232 1209 aa28.62■■■□□ 2.17
Scn1b-201ENSMUST00000098548 Gm12185Q5NCB2 835 aa28.62■■■□□ 2.17
Scn1b-201ENSMUST00000098548 Apba2P98084 750 aa28.61■■■□□ 2.17
Scn1b-201ENSMUST00000098548 Pde4dQ01063 747 aa28.61■■■□□ 2.17
Scn1b-201ENSMUST00000098548 Aldh1l1Q8R0Y6 902 aa28.61■■■□□ 2.17
Scn1b-201ENSMUST00000098548 Mylk2Q8VCR8 613 aa28.61■■■□□ 2.17
Scn1b-201ENSMUST00000098548 BcorQ8CGN4 1759 aa28.6■■■□□ 2.17
Scn1b-201ENSMUST00000098548 Smarcc1P97496 1104 aa28.6■■■□□ 2.17
Scn1b-201ENSMUST00000098548 PsapQ61207 557 aaKnown RBP28.6■■■□□ 2.17
Scn1b-201ENSMUST00000098548 Igfbp6P47880 238 aa28.59■■■□□ 2.17
Scn1b-201ENSMUST00000098548 Tspyl2Q7TQI8 677 aa28.59■■■□□ 2.17
Scn1b-201ENSMUST00000098548 Gm13023A2A8N2 498 aa28.58■■■□□ 2.17
Scn1b-201ENSMUST00000098548 Fam83gQ5SWY7 812 aa28.58■■■□□ 2.17
Scn1b-201ENSMUST00000098548 Tmco5bQ80X59 307 aa28.58■■■□□ 2.17
Scn1b-201ENSMUST00000098548 Smc5Q8CG46 1101 aaKnown RBP28.58■■■□□ 2.17
Retrieved 100 of 22,080 RNA–protein pairs in 55.3 ms