Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC40Q4G0X9 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC40Q4G0X9 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
CCDC40Q4G0X9 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC40Q4G0X9 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC20.69■□□□□ 0.9
CCDC40Q4G0X9 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC40Q4G0X9 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC40Q4G0X9 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC40Q4G0X9 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC40Q4G0X9 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC40Q4G0X9 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC40Q4G0X9 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC20.69■□□□□ 0.9
CCDC40Q4G0X9 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC20.69■□□□□ 0.9
CCDC40Q4G0X9 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC40Q4G0X9 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC40Q4G0X9 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC40Q4G0X9 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC40Q4G0X9 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC40Q4G0X9 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC40Q4G0X9 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC40Q4G0X9 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC40Q4G0X9 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC40Q4G0X9 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC40Q4G0X9 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
CCDC40Q4G0X9 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC40Q4G0X9 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC40Q4G0X9 PRORSD1P-201ENST00000295112 541 ntBASIC20.68■□□□□ 0.9
CCDC40Q4G0X9 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC40Q4G0X9 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC40Q4G0X9 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC40Q4G0X9 AC026271.3-201ENST00000571884 352 ntBASIC20.68■□□□□ 0.9
CCDC40Q4G0X9 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC20.68■□□□□ 0.9
CCDC40Q4G0X9 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
CCDC40Q4G0X9 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC20.68■□□□□ 0.9
CCDC40Q4G0X9 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC40Q4G0X9 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
CCDC40Q4G0X9 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC20.68■□□□□ 0.9
CCDC40Q4G0X9 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC20.68■□□□□ 0.9
CCDC40Q4G0X9 COBL-210ENST00000632460 1941 ntTSL 5 BASIC20.68■□□□□ 0.9
CCDC40Q4G0X9 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC40Q4G0X9 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC40Q4G0X9 HTR7P1-202ENST00000624664 4411 ntBASIC20.68■□□□□ 0.9
CCDC40Q4G0X9 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC40Q4G0X9 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC40Q4G0X9 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC40Q4G0X9 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC40Q4G0X9 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC40Q4G0X9 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC40Q4G0X9 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC40Q4G0X9 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
CCDC40Q4G0X9 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC40Q4G0X9 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC40Q4G0X9 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC40Q4G0X9 PEX7-202ENST00000367756 680 ntTSL 3 BASIC20.67■□□□□ 0.9
CCDC40Q4G0X9 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
CCDC40Q4G0X9 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
CCDC40Q4G0X9 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC40Q4G0X9 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC20.67■□□□□ 0.9
CCDC40Q4G0X9 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
CCDC40Q4G0X9 AC142381.4-202ENST00000563973 229 ntBASIC20.67■□□□□ 0.9
CCDC40Q4G0X9 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC20.67■□□□□ 0.9
CCDC40Q4G0X9 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC40Q4G0X9 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC40Q4G0X9 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
CCDC40Q4G0X9 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC40Q4G0X9 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
CCDC40Q4G0X9 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC40Q4G0X9 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
CCDC40Q4G0X9 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
CCDC40Q4G0X9 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC40Q4G0X9 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC40Q4G0X9 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC40Q4G0X9 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC40Q4G0X9 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC40Q4G0X9 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC40Q4G0X9 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC40Q4G0X9 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC40Q4G0X9 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC20.66■□□□□ 0.9
CCDC40Q4G0X9 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC40Q4G0X9 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
CCDC40Q4G0X9 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC20.66■□□□□ 0.9
CCDC40Q4G0X9 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC20.66■□□□□ 0.9
CCDC40Q4G0X9 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC20.66■□□□□ 0.9
CCDC40Q4G0X9 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC20.66■□□□□ 0.9
CCDC40Q4G0X9 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC40Q4G0X9 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC40Q4G0X9 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
CCDC40Q4G0X9 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC40Q4G0X9 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC40Q4G0X9 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC40Q4G0X9 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC40Q4G0X9 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC40Q4G0X9 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC40Q4G0X9 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC40Q4G0X9 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC20.66■□□□□ 0.9
CCDC40Q4G0X9 AC009113.1-201ENST00000570267 2443 ntBASIC20.66■□□□□ 0.9
CCDC40Q4G0X9 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC40Q4G0X9 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC20.66■□□□□ 0.9
CCDC40Q4G0X9 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC40Q4G0X9 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms